mRNA_P-littoralis_Contig1185.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1185.1.1
Unique NamemRNA_P-littoralis_Contig1185.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1185.1.1 vs. uniprot
Match: A0A6H5JRI3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRI3_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 2.460e-26
Identity = 61/140 (43.57%), Postives = 88/140 (62.86%), Query Frame = 3 
Query:   93 RGALVRKRYSYRQKAVAIERLRECQQQAAEIEKKYHMGPLQFAAQVAGVPQSNLHKWAGDEAVIVGKAAEKVTSGLLGKSAKRSWFPKAEQALYGLYMAKRRKGLKVSTLWLCTMMAQEVKKHYPDDPRRLIFKPSWRWA 512
            RGA+ RKRY  R KA+ + +LR  Q+ AA++ K+  + PLQ+      V  S + KWA DEA IV  AA+ V   LL K   + WFP+ E+ LY +++A+RR+ LKVSTLWL     + V++++P+D R   F  S+RWA
Sbjct:   91 RGAVKRKRYDVRFKALVVTQLRLLQEDAADLFKEEQLTPLQYLEDRLKVNYSLIVKWAQDEANIVQSAADDVKKTLLAKQQPKRWFPEEEKKLYNMFLARRRRKLKVSTLWLTVTFRKLVQENHPEDQRAAAFSASFRWA 230
[Close]
BLAST of mRNA_P-littoralis_Contig1185.1.1 vs. uniprot
Match: D8LRF1_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF1_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 2.240e-25
Identity = 57/140 (40.71%), Postives = 87/140 (62.14%), Query Frame = 3 
Query:   90 RRGALVRKRYSYRQKAVAIERLRECQQQAAEIEKKYHMGPLQFAAQVAGVPQSNLHKWAGDEAVIVGKAAEKVTSGLLGKSAKRSWFPKAEQALYGLYMAKRRKGLKVSTLWLCTMMAQEVKKHYPDDPRRLIFKPSWRW 509
            RRGA  R RY +R KA  I++LR  ++    + +  H+ P+Q+      VP++N+ KW  DE  IV  AA++V   LL K   + WFP AE+ L+  ++A+R+K LKVSTLWL     + +++H+P D R  +F+PS+RW
Sbjct:  265 RRGAAKRNRYDFRFKAHVIQQLRILEEDRQALWQAEHLSPMQYLETHMKVPRTNISKWVKDEDEIVAFAADEVKQTLLAKQQPKRWFPAAERELFNRFLARRKKKLKVSTLWLTVTFRKLLEEHHPTDSRAAVFRPSFRW 404
[Close]
BLAST of mRNA_P-littoralis_Contig1185.1.1 vs. uniprot
Match: A0A6H5LCI6_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCI6_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 2.660e-25
Identity = 61/140 (43.57%), Postives = 88/140 (62.86%), Query Frame = 3 
Query:   93 RGALVRKRYSYRQKAVAIERLRECQQQAAEIEKKYHMGPLQFAAQVAGVPQSNLHKWAGDEAVIVGKAAEKVTSGLLGKSAKRSWFPKAEQALYGLYMAKRRKGLKVSTLWLCTMMAQEVKKHYPDDPRRLIFKPSWRWA 512
            RGA+ RKRY +R KA  + +LR  Q+ AA++ K+  + PLQ+      V  S + KWA DEA IV  AA+ V   LL K   + WFP+ E+ LY +++A+RR+ LKVSTLWL     + V++++P+D R   F  S+RWA
Sbjct:  266 RGAVKRKRYDFRFKAHVVTQLRLLQEDAADLFKEEQLTPLQYLEDRLKVNYSLIVKWAQDEANIVQSAADDVKKTLLAKQQPKRWFPEEEKKLYNMFLARRRRKLKVSTLWLTVTFRKLVQENHPEDQRAAAFSASFRWA 405
[Close]
BLAST of mRNA_P-littoralis_Contig1185.1.1 vs. uniprot
Match: A0A6H5J6R3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6R3_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 4.600e-25
Identity = 63/140 (45.00%), Postives = 85/140 (60.71%), Query Frame = 3 
Query:   93 RGALVRKRYSYRQKAVAIERLRECQQQAAEIEKKYHMGPLQFAAQVAGVPQSNLHKWAGDEAVIVGKAAEKVTSGLLGKSAKRSWFPKAEQALYGLYMAKRRKGLKVSTLWLCTMMAQEVKKHYPDDPRRLIFKPSWRWA 512
            RGA  R+RY YR KA A+ +LR  +  AA+I K+    PLQ  A    V  SN+ KWA DE  IV  AA+ V   LL K   + WFP+AE+ LY +++ +R++ LKVSTLWL     + V++ YP D R   F+ S+RWA
Sbjct:  272 RGAPKRRRYDYRFKANAVNQLRILEDNAADIWKEEERTPLQCLADRLKVHYSNIVKWAKDEKAIVAAAADDVKKSLLAKQQPKRWFPEAEKRLYKMFVERRKRKLKVSTLWLTITFRKLVREMYPGDQRAAAFRASFRWA 411
[Close]
BLAST of mRNA_P-littoralis_Contig1185.1.1 vs. uniprot
Match: A0A6H5KDV1_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV1_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 5.540e-25
Identity = 61/140 (43.57%), Postives = 88/140 (62.86%), Query Frame = 3 
Query:   93 RGALVRKRYSYRQKAVAIERLRECQQQAAEIEKKYHMGPLQFAAQVAGVPQSNLHKWAGDEAVIVGKAAEKVTSGLLGKSAKRSWFPKAEQALYGLYMAKRRKGLKVSTLWLCTMMAQEVKKHYPDDPRRLIFKPSWRWA 512
            RGA+ RKRY +R KA  + +LR  Q+ AA++ K+  + PLQ+      V  S + KWA DEA IV  AA+ V   LL K   + WFP+ E+ LY +++A+RR+ LKVSTLWL     + V++++P+D R   F  S+RWA
Sbjct:  159 RGAVKRKRYDFRFKAHVVTQLRLLQEDAADLFKEEQLTPLQYLEDRLKVNYSLIVKWAQDEANIVQSAADDVKKTLLAKQQPKRWFPEEEKKLYNMFLARRRRKLKVSTLWLTVTFRKLVQENHPEDQRAAAFSASFRWA 298
[Close]
BLAST of mRNA_P-littoralis_Contig1185.1.1 vs. uniprot
Match: A0A6H5JFX9_9PHAE (C2H2-type domain-containing protein n=15 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFX9_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 6.240e-25
Identity = 61/140 (43.57%), Postives = 88/140 (62.86%), Query Frame = 3 
Query:   93 RGALVRKRYSYRQKAVAIERLRECQQQAAEIEKKYHMGPLQFAAQVAGVPQSNLHKWAGDEAVIVGKAAEKVTSGLLGKSAKRSWFPKAEQALYGLYMAKRRKGLKVSTLWLCTMMAQEVKKHYPDDPRRLIFKPSWRWA 512
            RGA+ RKRY +R KA  + +LR  Q+ AA++ K+  + PLQ+      V  S + KWA DEA IV  AA+ V   LL K   + WFP+ E+ LY +++A+RR+ LKVSTLWL     + V++++P+D R   F  S+RWA
Sbjct:  273 RGAVKRKRYDFRFKAHVVTQLRLLQEDAADLFKEEQLTPLQYLEDRLKVNYSLIVKWAQDEANIVQSAADDVKKTLLAKQQPKRWFPEEEKKLYNMFLARRRRKLKVSTLWLTVTFRKLVQENHPEDQRAAAFSASFRWA 412
[Close]
BLAST of mRNA_P-littoralis_Contig1185.1.1 vs. uniprot
Match: A0A6H5K3E7_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3E7_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 6.430e-25
Identity = 60/140 (42.86%), Postives = 87/140 (62.14%), Query Frame = 3 
Query:   93 RGALVRKRYSYRQKAVAIERLRECQQQAAEIEKKYHMGPLQFAAQVAGVPQSNLHKWAGDEAVIVGKAAEKVTSGLLGKSAKRSWFPKAEQALYGLYMAKRRKGLKVSTLWLCTMMAQEVKKHYPDDPRRLIFKPSWRWA 512
            RGA+ RKRY +R KA  + +LR  Q+ AA++ K+  + PLQ+      V  S + KWA DEA IV  AA+ V    L K   + WFP+ E+ LY +++A+RR+ LKVSTLWL     + V++++P+D R   F  S+RWA
Sbjct:  136 RGAVKRKRYDFRFKAHVVTQLRLLQEDAADLFKEEQLTPLQYLEDRLKVNYSLIVKWAQDEANIVQSAADDVKQTHLAKQQPKRWFPEEEKKLYNMFLARRRRKLKVSTLWLTVTFRKLVQENHPEDQRAAAFSASFRWA 275
[Close]
BLAST of mRNA_P-littoralis_Contig1185.1.1 vs. uniprot
Match: A0A6H5L1Y1_9PHAE (HTH CENPB-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Y1_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 8.610e-25
Identity = 61/140 (43.57%), Postives = 85/140 (60.71%), Query Frame = 3 
Query:   93 RGALVRKRYSYRQKAVAIERLRECQQQAAEIEKKYHMGPLQFAAQVAGVPQSNLHKWAGDEAVIVGKAAEKVTSGLLGKSAKRSWFPKAEQALYGLYMAKRRKGLKVSTLWLCTMMAQEVKKHYPDDPRRLIFKPSWRWA 512
            RGA  R+RY YR KA A+ +LR  +  AA++ K+    PLQ+      V  SN+ KWA DE  IV  AA+ V   LL K   + WFP+AE+ LY +++ +R++ LKVSTLWL     + V++ YP D R   F+ S+RWA
Sbjct:  392 RGAPKRRRYDYRFKANAVNQLRILEDNAADLWKEEERTPLQYLEDRLKVHYSNIVKWAKDEKAIVAAAADDVKKSLLAKQQPKRWFPEAEKRLYKMFVERRKRKLKVSTLWLTITFRKLVREMYPGDQRAAAFRASFRWA 531
[Close]
BLAST of mRNA_P-littoralis_Contig1185.1.1 vs. uniprot
Match: A0A6H5JXH0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXH0_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.920e-24
Identity = 57/140 (40.71%), Postives = 85/140 (60.71%), Query Frame = 3 
Query:   90 RRGALVRKRYSYRQKAVAIERLRECQQQAAEIEKKYHMGPLQFAAQVAGVPQSNLHKWAGDEAVIVGKAAEKVTSGLLGKSAKRSWFPKAEQALYGLYMAKRRKGLKVSTLWLCTMMAQEVKKHYPDDPRRLIFKPSWRW 509
            RRGA  R RY YR +A  +++L   ++    + +  H+ PLQ+      VP+ N+ KW  +E  IV  AA++V   LL K   + WFP AE+ LY  ++A+RRK LKVSTLWL     + +++H+P D R  +F+PS+RW
Sbjct:   35 RRGAAKRNRYDYRFEAHVLQQLHILEEDRQALWQAEHLTPLQYLETHMNVPRPNICKWVKEENEIVAGAADEVKQTLLAKQQLKRWFPTAEKKLYNRFLARRRKKLKVSTLWLTVTFRKLLEEHHPTDSRAALFRPSFRW 174
[Close]
BLAST of mRNA_P-littoralis_Contig1185.1.1 vs. uniprot
Match: A0A6H5KBV2_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBV2_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.960e-24
Identity = 61/140 (43.57%), Postives = 84/140 (60.00%), Query Frame = 3 
Query:   93 RGALVRKRYSYRQKAVAIERLRECQQQAAEIEKKYHMGPLQFAAQVAGVPQSNLHKWAGDEAVIVGKAAEKVTSGLLGKSAKRSWFPKAEQALYGLYMAKRRKGLKVSTLWLCTMMAQEVKKHYPDDPRRLIFKPSWRWA 512
            RGA  R+RY YR KA A+ +LR  +  AA++ K+    PLQ+      V  SN+ KWA DE  IV  AA+ V   LL K   + WFP+AE+  Y +++ +R++ LKVSTLWL T   + V+  YP D R   F+ S+RWA
Sbjct:  498 RGAPKRRRYDYRFKANAVNQLRILEDNAADLWKEEERTPLQYLEDRLKVHYSNIVKWAKDEKAIVAAAADDVKKSLLAKQQSKRWFPEAEKRPYKMFVERRKRKLKVSTLWLTTTCQKLVRDMYPGDQRAAAFRASFRWA 637
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1185.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRI3_9PHAE2.460e-2643.57Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LRF1_ECTSI2.240e-2540.71C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
A0A6H5LCI6_9PHAE2.660e-2543.57C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J6R3_9PHAE4.600e-2545.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDV1_9PHAE5.540e-2543.57C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JFX9_9PHAE6.240e-2543.57C2H2-type domain-containing protein n=15 Tax=Ectoc... [more]
A0A6H5K3E7_9PHAE6.430e-2542.86C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L1Y1_9PHAE8.610e-2543.57HTH CENPB-type domain-containing protein n=2 Tax=E... [more]
A0A6H5JXH0_9PHAE1.920e-2440.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBV2_9PHAE1.960e-2443.57C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1185contigP-littoralis_Contig1185:829..1583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LRF1
PFAMsDDE_1
Model size755
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.88e-20
EggNOG OGs2DCSR@1|root,2S5KN@2759|Eukaryota
Cds size555
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789497.6141217-UTR-P-littoralis_Contig1185:828..10281680789497.6141217-UTR-P-littoralis_Contig1185:828..1028Pylaiella littoralis U1_48UTRP-littoralis_Contig1185 829..1028 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789497.6287384-CDS-P-littoralis_Contig1185:1028..15831680789497.6287384-CDS-P-littoralis_Contig1185:1028..1583Pylaiella littoralis U1_48CDSP-littoralis_Contig1185 1029..1583 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1185.1.1prot_P-littoralis_Contig1185.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1185 1029..1583 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1185.1.1

>prot_P-littoralis_Contig1185.1.1 ID=prot_P-littoralis_Contig1185.1.1|Name=mRNA_P-littoralis_Contig1185.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=185bp
MGPLQFAAQVAGVPQSNLHKWAGDEAVIVGKAAEKVTSGLLGKSAKRSWF
PKAEQALYGLYMAKRRKGLKVSTLWLCTMMAQEVKKHYPDDPRRLIFKPS
WRWAGSGQTSAASLSGDGATPRTRASSSASQDWTVSQETAGSNAVSAAGA
ACTSGAGTSCCRGQRGICCWGKWDSCCRRQRGRCC
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mRNA from alignment at P-littoralis_Contig1185:829..1583+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1185.1.1 ID=mRNA_P-littoralis_Contig1185.1.1|Name=mRNA_P-littoralis_Contig1185.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=755bp|location=Sequence derived from alignment at P-littoralis_Contig1185:829..1583+ (Pylaiella littoralis U1_48)
AAGACGGGGCGCGCGGAGTTCGGCATTCAGCAGAGAACCACACCTATCGA
CGATGGGTTCGCCACTGACGACGAGGGCAAGGAGAGGGACGCCGCGGTGC
GCTGGTGCGAAAACGGTACAGCTACCGACAAAAGGCTGTGGCGATCGAGC
GCTTGAGGGAATGCCAGCAGCAAGCGGCGGAGATTGAGAAAAAGTATCAC
ATGGGGCCGCTTCAGTTCGCGGCACAGGTGGCCGGCGTTCCACAGTCTAA
TCTACACAAGTGGGCTGGCGACGAGGCAGTCATCGTTGGAAAGGCAGCTG
AGAAGGTGACCAGTGGCCTTCTGGGAAAGTCTGCCAAGAGGTCGTGGTTC
CCCAAAGCCGAGCAAGCTCTATACGGCCTATACATGGCAAAGCGTCGGAA
AGGCCTCAAGGTGTCGACACTCTGGCTTTGCACGATGATGGCGCAGGAGG
TGAAGAAGCACTATCCGGACGATCCGCGGAGGCTGATATTCAAGCCGTCG
TGGCGCTGGGCGGGAAGTGGGCAAACAAGCGCAGCATCGTTAAGCGGCGA
CGGAGCAACTCCAAGAACGAGAGCGTCGAGCAGCGCCTCCCAAGATTGGA
CGGTTTCTCAAGAAACTGCGGGCTCTAATGCAGTGTCCGCCGCCGGGGCA
GCGTGCACCTCCGGCGCCGGCACCAGCTGCTGCAGGGGGCAGCGGGGCAT
CTGCTGCTGGGGGAAGTGGGACAGCTGCTGCAGGAGGCAGCGGGGCCGCT
GCTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1185:829..1583+

>mRNA_P-littoralis_Contig1185.1.1 ID=mRNA_P-littoralis_Contig1185.1.1|Name=mRNA_P-littoralis_Contig1185.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=555bp|location=Sequence derived from alignment at P-littoralis_Contig1185:829..1583+ (Pylaiella littoralis U1_48)
ATGGGGCCGCTTCAGTTCGCGGCACAGGTGGCCGGCGTTCCACAGTCTAA
TCTACACAAGTGGGCTGGCGACGAGGCAGTCATCGTTGGAAAGGCAGCTG
AGAAGGTGACCAGTGGCCTTCTGGGAAAGTCTGCCAAGAGGTCGTGGTTC
CCCAAAGCCGAGCAAGCTCTATACGGCCTATACATGGCAAAGCGTCGGAA
AGGCCTCAAGGTGTCGACACTCTGGCTTTGCACGATGATGGCGCAGGAGG
TGAAGAAGCACTATCCGGACGATCCGCGGAGGCTGATATTCAAGCCGTCG
TGGCGCTGGGCGGGAAGTGGGCAAACAAGCGCAGCATCGTTAAGCGGCGA
CGGAGCAACTCCAAGAACGAGAGCGTCGAGCAGCGCCTCCCAAGATTGGA
CGGTTTCTCAAGAAACTGCGGGCTCTAATGCAGTGTCCGCCGCCGGGGCA
GCGTGCACCTCCGGCGCCGGCACCAGCTGCTGCAGGGGGCAGCGGGGCAT
CTGCTGCTGGGGGAAGTGGGACAGCTGCTGCAGGAGGCAGCGGGGCCGCT
GCTGC
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