mRNA_P-littoralis_Contig735.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig735.19.1
Unique NamemRNA_P-littoralis_Contig735.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig735.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig735contigP-littoralis_Contig735:56310..58687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size578
Hectar predicted targeting categorymitochondrion
Exons2
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791521.1717362-CDS-P-littoralis_Contig735:56309..566751680791521.1717362-CDS-P-littoralis_Contig735:56309..56675Pylaiella littoralis U1_48CDSP-littoralis_Contig735 56310..56675 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791521.188151-UTR-P-littoralis_Contig735:56675..567391680791521.188151-UTR-P-littoralis_Contig735:56675..56739Pylaiella littoralis U1_48UTRP-littoralis_Contig735 56676..56739 +
1680791521.2185087-UTR-P-littoralis_Contig735:58541..586871680791521.2185087-UTR-P-littoralis_Contig735:58541..58687Pylaiella littoralis U1_48UTRP-littoralis_Contig735 58542..58687 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig735.19.1prot_P-littoralis_Contig735.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig735 56310..56675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig735.19.1

>prot_P-littoralis_Contig735.19.1 ID=prot_P-littoralis_Contig735.19.1|Name=mRNA_P-littoralis_Contig735.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=122bp
WCSCSRHILWLWRYRLRLWRFLAPRRSKLRRRQEATAVREAFRERFERRG
VLWSMVGDCETLPSDRNKAVLATIQMTRTVTRTVTRTVTRTKKCAKRKRR
FGKVVGWGQRLRRSRLRSKRG*
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mRNA from alignment at P-littoralis_Contig735:56310..58687+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig735.19.1 ID=mRNA_P-littoralis_Contig735.19.1|Name=mRNA_P-littoralis_Contig735.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2378bp|location=Sequence derived from alignment at P-littoralis_Contig735:56310..58687+ (Pylaiella littoralis U1_48)
TGGTGCAGCTGTTCGAGGCACATTCTCTGGCTGTGGAGGTACCGTCTCCG
TCTGTGGCGCTTCTTGGCACCCCGCCGCTCCAAGCTGAGGAGGCGTCAGG
AAGCAACTGCCGTGCGGGAAGCGTTTCGGGAACGGTTCGAGCGGCGAGGG
GTGCTGTGGTCGATGGTGGGGGATTGCGAGACGCTGCCTAGCGACAGAAA
CAAGGCTGTTCTCGCGACGATACAAATGACGAGAACGGTGACGAGAACGG
TGACGAGAACGGTGACGAGAACGAAGAAATGTGCAAAGCGGAAACGGAGG
TTCGGGAAGGTTGTGGGATGGGGGCAGCGGCTGCGCCGGTCGAGGTTGAG
GTCCAAGAGGGGTTGATCTACCCCGGAAGGAAAGAAACGGGCACGCCCGA
GGAATCCGACACGGATACGAGATTCCAAAAGTGAGTTTTGATGTTCTTGG
TGTCACTTAAATGTAACTTTTTGAAGTATTCTCATGAATTGCTTCTTCAA
GTAGTTTTTTCCTCTGTCTCCCCTGTCGTACCCTCTCCCCCCCATTCTTC
AGTTTGATGTCGTATTGCCGAGTCTGTATTATTGTGTGCCGTGCTCAATT
CCTTAAAGGGTTGGGCTCCCAGAAGGGAGGTTGTAGAGGATGGTTCGATC
CGCCGTTACTGAGTGGAACTTGACAGTTCTTTGAAAATTTTCCGGTTGAT
TGTCGACCAAGGTCCGCGGCCTGATTGTTGCATCTTTGCACACCGTGGAC
AATGTACGCGGTAGTAGTCCATTGCTTCGACAAGAGACGTGGGGGGAAAT
CTATCGATGCCCATTGCATAATACAATCGATGGTGGAACGGATCTCTCGA
TGTATGTTGCCGGAAACAACAGATTTGGAAAACCGTCATCGATAGTCTAT
TGCAGTAGCAAAAAATCGAGATAACTGGCCATCGATATGAATTGTAGACC
ATTAGTAGACTCGGTGGGGGTTCTATCTATCGTTAGCCATTGCCGTCTAC
AGTTGATATTGGGGTGGTTCTATTGATGGCCATTGCTACGAAGAATATGT
TATGGGGGATCTATCAATAGCCACTACCTCATACTAAAGATTCTAAAGAA
CACCTCCTTCATCCATCTACAGCAAGCAGAGAAGTATTGTTAACATGTAT
GGATAATATACTCGAAAAACGTTAACGTTGATACGTACTTGGTTCAAAAA
CCATCCGTGTGGCTGCTGATGCCGCCCATCATCTACCCAAAGTTAACACA
CATCCATCCGCACTGCTTCTATACGCGGCCAGGGATCGCGACCCCCGTGG
CTCACCCACAGATAGTATTGTGGCTGACAACATCTATTGATAGGCACGCG
TCAAAACACATTGGGCACGACAATGGCTATTGATAGACGCGGATGAAGTC
CCATCGTGTCTACCAATGACCATTGATGTGTGCAAGATTATAGTCTACTG
CAACACACGGTGTACATATTGATCGAGAACATGCCCACTCCATGGTGACG
GCAAATACATATTGTATCCATTGTTCCCAAATTTATTGTTACGCCCAAAT
TTATACCGATAGACGGCGATACCAATGCCTCGTAGCCGACAAATGGCCAT
CGACCTTCAAATTCTCGGGGCCAGTGCGGCGGCAGTGTTCCATTACACCG
TCTTTTGTTCAGGGTATAAGGCACATCGTATCCACACATACTATACTCCC
CACACAAACTACCCTGAATACATGTATCGATAGACGTGATGTTTTGCAAT
GCGTTTCGGGATGCGTGTATCGATGGACATTGTCATTCACAATATATTTG
ACAAGACTTCTACCGATGGCCCTTGCCGTCAACAATTGATCATCCAAATT
TTCCATCAATATCCATTGCCGCAAACAATAGCTCAGGTACTCCAGGTATC
GATGTATTAGGTCGCGGGGAATAGCATGGAAAAGGGTTCTCTATCGATAG
GCATGTCCGACGACAATGAAAGTAGAAACCTACCAATCAATAGCTCCCGA
GGACAATAATGGCGTCCAATAGCAGAAGCTATTGGACATTGTCTTTTGTC
CAGGGTGTACATCTTTGAAGGCGGATCAACGTGACGAGACTCATTTGTAT
TTATTTTAGGTGAACCATAACCTGTTACAAATTTTTAGGCCCGACGACAG
CCTGTTACGATTGCGTGCGTTCCCGCAAGACGCCGTTTTTGTCTCAACAT
CTGCCTTTGCCTTCTGCTTCACACGCCAGCAGGAGCTATGACGGTGGAAG
GTCAACCTTAGACAGCGACGTCCCCCGTTGCCGAGGACAGTAGGAGTGGA
CACCTTTAGTGGAATACGAACACCGAAAAGGACACCAGCAGTAGTAGCGG
TGTTGAGTGGGGAGACAAAGCTGTCAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig735:56310..58687+

>mRNA_P-littoralis_Contig735.19.1 ID=mRNA_P-littoralis_Contig735.19.1|Name=mRNA_P-littoralis_Contig735.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=366bp|location=Sequence derived from alignment at P-littoralis_Contig735:56310..58687+ (Pylaiella littoralis U1_48)
TGGTGCAGCTGTTCGAGGCACATTCTCTGGCTGTGGAGGTACCGTCTCCG
TCTGTGGCGCTTCTTGGCACCCCGCCGCTCCAAGCTGAGGAGGCGTCAGG
AAGCAACTGCCGTGCGGGAAGCGTTTCGGGAACGGTTCGAGCGGCGAGGG
GTGCTGTGGTCGATGGTGGGGGATTGCGAGACGCTGCCTAGCGACAGAAA
CAAGGCTGTTCTCGCGACGATACAAATGACGAGAACGGTGACGAGAACGG
TGACGAGAACGGTGACGAGAACGAAGAAATGTGCAAAGCGGAAACGGAGG
TTCGGGAAGGTTGTGGGATGGGGGCAGCGGCTGCGCCGGTCGAGGTTGAG
GTCCAAGAGGGGTTGA
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