mRNA_P-littoralis_Contig735.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig735.17.1
Unique NamemRNA_P-littoralis_Contig735.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig735.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig735contigP-littoralis_Contig735:53419..54900 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size309
Hectar predicted targeting categoryother localisation
Exons2
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791521.1086042-CDS-P-littoralis_Contig735:53418..535391680791521.1086042-CDS-P-littoralis_Contig735:53418..53539Pylaiella littoralis U1_48CDSP-littoralis_Contig735 53419..53539 +
1680791521.1210537-CDS-P-littoralis_Contig735:54713..548141680791521.1210537-CDS-P-littoralis_Contig735:54713..54814Pylaiella littoralis U1_48CDSP-littoralis_Contig735 54714..54814 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791521.134837-UTR-P-littoralis_Contig735:54814..549001680791521.134837-UTR-P-littoralis_Contig735:54814..54900Pylaiella littoralis U1_48UTRP-littoralis_Contig735 54815..54900 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig735.17.1prot_P-littoralis_Contig735.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig735 53419..54814 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig735.17.1

>prot_P-littoralis_Contig735.17.1 ID=prot_P-littoralis_Contig735.17.1|Name=mRNA_P-littoralis_Contig735.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=74bp
LDLLGEGGGGNHVGISGVVLGRKGDERGSGGTGSVEEPRGGCVRAREPNR
VEQVLSVKFRSEGCTGMSTISFS*
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mRNA from alignment at P-littoralis_Contig735:53419..54900+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig735.17.1 ID=mRNA_P-littoralis_Contig735.17.1|Name=mRNA_P-littoralis_Contig735.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1482bp|location=Sequence derived from alignment at P-littoralis_Contig735:53419..54900+ (Pylaiella littoralis U1_48)
TTGGATCTGCTGGGGGAGGGTGGCGGAGGCAATCATGTTGGAATATCCGG
GGTTGTACTTGGAAGGAAGGGAGACGAGAGGGGCAGTGGTGGCACTGGCA
GCGTTGAAGAACCGAGAGGAGGTAAGGCCCATAACGTATGTGCTAGTTCA
GATCTTACAATGTTTTCAAAGGTTGACATGATGGCTGAAGTGTTTCGCGT
CTGAATGCTCTTTTTTTTTTGTTAACTTACAAAAACATCAATGTGTTCGC
CTCTCTCCAGACAAGGATCTGGAGCAGATATTGCAACGAATACAAAGATT
AATACGTCTACCAGTGTTTCTATACTCAGCAACTAGTGTACCGTTGCAGC
TCCCCTGAGGGTATCAGTCTCAACAAGACAATTTGGTGGTCGTCCTGTGT
GACACACGTTACACCATGAGTTGAGTGTTAACGATCTATACTTGTGCTGT
TTGCATCATCCTTGGCAAAGTGATGGTGGTGATTTGATGTTTTTCGTGCA
GCAGTAGATTTTACGTTATAGACAAGAACACCATTTTTGAATTCCACAAA
TATACCGGTATGCAATCTACACACATGGTACTACTTACTTTATGTTTCTT
ATATGTATGGCGAAGTACGATGCATCCGTGATGGCCCGATTACGAAGGAC
ATGCATGTGTATAGCTACCGCACTATCCACAACTCATACTATAATCACAT
GTACTTATTATGTAGCGGGGTGCAAGGCCCATGGTCGCCGGTTGATTTCT
GAAATATTTCCATGTGTGAACATGATGATTGGTACGCTTGAATGCTACCA
GTACTTTGTCATCTCATGTTGTACTTCAAGCAAAACTCTGATTTTTTTCA
GAGGTTGACACGACACGTGATTGAAGAATTTCGCGCATGAATGCTGAATT
TCAGAAGGAAGGTATTAGGTGCAGCAGCAGCAGCAGAGATGGGGAGCTGT
GCAGTAGCAGGTGGCCATTGCCGTTAAAAACCGGATGCAATACAGTAGTG
TTGCTCGAAAGTGGTCCCGATGAGAAGGAAGAAGTATGTGTGTACCCTGT
GACAGAACGGTTTTTTCGTAGCTTGAGGATTATTTCCTGTGCCGTTTGTC
TACTGCAGTTACCTTTGAACTCGAAAATCACGAGCGTTTTTTTTGTCAAG
AGGAGGTGCGGCATTTGTCGGTACCAGGTAGTCGACTCGGCTGGTTATTT
TAGCAAGGTGCTCTTGACGATTTACTCTTGGCGCTCAGAGGCGTTTCGCT
CTAGCTGATATCGCCCTCCGCCCCCTCCCTACCCCCTCTACGCAGGCTGC
GTGCGTGCGCGTGAGCCGAATAGAGTTGAACAGGTCCTTTCAGTAAAATT
CAGGAGTGAAGGATGTACCGGCATGAGCACGATAAGCTTCTCTTGAAAGT
AGCCCGGTCGAATTGTTTGCCCTGGAGGAGTACAACAGGGAAGCGGTGGT
GGTGATGATCGTGGTCATGGAAGAGTGCGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig735:53419..54900+

>mRNA_P-littoralis_Contig735.17.1 ID=mRNA_P-littoralis_Contig735.17.1|Name=mRNA_P-littoralis_Contig735.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=222bp|location=Sequence derived from alignment at P-littoralis_Contig735:53419..54900+ (Pylaiella littoralis U1_48)
TTGGATCTGCTGGGGGAGGGTGGCGGAGGCAATCATGTTGGAATATCCGG
GGTTGTACTTGGAAGGAAGGGAGACGAGAGGGGCAGTGGTGGCACTGGCA
GCGTTGAAGAACCGAGAGGAGGCTGCGTGCGTGCGCGTGAGCCGAATAGA
GTTGAACAGGTCCTTTCAGTAAAATTCAGGAGTGAAGGATGTACCGGCAT
GAGCACGATAAGCTTCTCTTGA
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