mRNA_P-littoralis_Contig735.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig735.14.1
Unique NamemRNA_P-littoralis_Contig735.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig735.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig735contigP-littoralis_Contig735:43563..43818 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size221
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791521.0333035-UTR-P-littoralis_Contig735:43562..436251680791521.0333035-UTR-P-littoralis_Contig735:43562..43625Pylaiella littoralis U1_48UTRP-littoralis_Contig735 43563..43625 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791521.0440917-CDS-P-littoralis_Contig735:43625..436591680791521.0440917-CDS-P-littoralis_Contig735:43625..43659Pylaiella littoralis U1_48CDSP-littoralis_Contig735 43626..43659 -
1680791521.054677-CDS-P-littoralis_Contig735:43696..438181680791521.054677-CDS-P-littoralis_Contig735:43696..43818Pylaiella littoralis U1_48CDSP-littoralis_Contig735 43697..43818 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig735.14.1prot_P-littoralis_Contig735.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig735 43626..43818 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig735.14.1

>prot_P-littoralis_Contig735.14.1 ID=prot_P-littoralis_Contig735.14.1|Name=mRNA_P-littoralis_Contig735.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=52bp
PEASTTEVCGSWVLPLPFPIPSSTSSAESISQLHSLSELIDPKDRAKKTR
S*
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mRNA from alignment at P-littoralis_Contig735:43563..43818-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig735.14.1 ID=mRNA_P-littoralis_Contig735.14.1|Name=mRNA_P-littoralis_Contig735.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=256bp|location=Sequence derived from alignment at P-littoralis_Contig735:43563..43818- (Pylaiella littoralis U1_48)
CCCGAGGCCTCTACGACAGAGGTATGCGGCTCTTGGGTCCTGCCCTTGCC
CTTCCCAATCCCATCTTCGACGTCATCCGCTGAGTCCATCTCGCAGCTGC
ACTCGCTGTCGGAATTAATTGAGTCCCAAAGACCGCACGCTCTGTCGGAA
TTAATTGAGTCCCAAAGACCGAGCCAAGAAGACACGAAGCTGACCGATGA
AAGAATAGCAGACAGGTCTAGCAGACCAACGCACGAGGGAAGACAGAAAG
AAGACA
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Coding sequence (CDS) from alignment at P-littoralis_Contig735:43563..43818-

>mRNA_P-littoralis_Contig735.14.1 ID=mRNA_P-littoralis_Contig735.14.1|Name=mRNA_P-littoralis_Contig735.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=156bp|location=Sequence derived from alignment at P-littoralis_Contig735:43563..43818- (Pylaiella littoralis U1_48)
CCCGAGGCCTCTACGACAGAGGTATGCGGCTCTTGGGTCCTGCCCTTGCC
CTTCCCAATCCCATCTTCGACGTCATCCGCTGAGTCCATCTCGCAGCTGC
ACTCGCTGTCGGAATTAATTGATCCCAAAGACCGAGCCAAGAAGACACGA
AGCTGA
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