mRNA_P-littoralis_Contig734.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig734.4.1
Unique NamemRNA_P-littoralis_Contig734.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig734.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig734contigP-littoralis_Contig734:23990..28123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size932
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog description3'5'-cyclic nucleotide phosphodiesterase, catalytic domain
Ec32 orthologEc-20_002540.1
Cds size774
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig734.4.1prot_P-littoralis_Contig734.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig734 24146..28123 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791520.1412482-UTR-P-littoralis_Contig734:23989..241451680791520.1412482-UTR-P-littoralis_Contig734:23989..24145Pylaiella littoralis U1_48UTRP-littoralis_Contig734 23990..24145 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791520.1630309-CDS-P-littoralis_Contig734:24145..244321680791520.1630309-CDS-P-littoralis_Contig734:24145..24432Pylaiella littoralis U1_48CDSP-littoralis_Contig734 24146..24432 +
1680791520.177127-CDS-P-littoralis_Contig734:25567..257111680791520.177127-CDS-P-littoralis_Contig734:25567..25711Pylaiella littoralis U1_48CDSP-littoralis_Contig734 25568..25711 +
1680791520.1871939-CDS-P-littoralis_Contig734:26082..261901680791520.1871939-CDS-P-littoralis_Contig734:26082..26190Pylaiella littoralis U1_48CDSP-littoralis_Contig734 26083..26190 +
1680791520.201366-CDS-P-littoralis_Contig734:26861..270151680791520.201366-CDS-P-littoralis_Contig734:26861..27015Pylaiella littoralis U1_48CDSP-littoralis_Contig734 26862..27015 +
1680791520.214475-CDS-P-littoralis_Contig734:28042..281231680791520.214475-CDS-P-littoralis_Contig734:28042..28123Pylaiella littoralis U1_48CDSP-littoralis_Contig734 28043..28123 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig734.4.1

>prot_P-littoralis_Contig734.4.1 ID=prot_P-littoralis_Contig734.4.1|Name=mRNA_P-littoralis_Contig734.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=258bp
MEEPALWRPAAAAETKDRGMESTRESKSRIRNKSIAAVPAPRSQPNRRIK
SDLGSKMFMAGSSVASRPCPRRGSLSMLAYQSRMLELEKSGAACVRSNDK
SRPVQLVHQIQPVLDSSAFLGFTAVASTVALFLAVMQTESWQEWHSSDRV
WAVQLLLAAGAASELVFRLLACGPSYCSDWVSLFDTFVVVGGACLTASMR
TGSAVLFLRIVRIAALSVGRGWSTGGTQETLGDLDENPAVQLYRLVMRAM
RESTVFTA
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mRNA from alignment at P-littoralis_Contig734:23990..28123+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig734.4.1 ID=mRNA_P-littoralis_Contig734.4.1|Name=mRNA_P-littoralis_Contig734.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4134bp|location=Sequence derived from alignment at P-littoralis_Contig734:23990..28123+ (Pylaiella littoralis U1_48)
TATTTGTCGGGGTATGACGTGAGTGCGCGGTCTGCTCTCCTGTTTTAGAT
AGCCCGGCGGGAGAATATCTGTGTCCTGTGTGTTGTGTTGAGTGTTGTCT
GTGCGTGTGTGGGTGTTTGCGTCGGTGTGGTGGATATCATCGTTTCCTTG
TTGAGCATGGAGGAACCAGCGTTGTGGCGACCGGCGGCTGCTGCTGAGAC
CAAGGACCGAGGGATGGAATCTACAAGGGAGTCGAAAAGCAGAATACGGA
ACAAGTCCATTGCTGCTGTGCCCGCCCCTCGTAGTCAGCCGAATAGACGA
ATCAAGTCTGACTTGGGAAGCAAGATGTTCATGGCGGGGTCAAGCGTGGC
GAGCCGTCCATGCCCCCGCCGAGGGAGCTTATCGATGCTGGCTTATCAGA
GCAGGATGCTGGAGCTGGAGAAATCGGGGGCCGCCTGCGTGAGGTATGTG
ACCGCCTCGCCGAAAGGGAAAAGACAATTGTTTGTAGTTGATTCTCACCA
CCCCAGCCTTTTCACTTGTCCCAAACCGAGCACACATTATTTGATATCGT
CGTATATGTAAAAGAAAAAATAAATGTACCAGGTAATAAAATAAACCGCA
CAGACAAAAAGAGCATAGTAGATACCGTCTGGCCAACGGGATGTCTTCTG
TCGTGTCCAAAATACAAAGACATTCAGAAATACAGGCTCGAAAAAAGTAC
AAAACAAAACAAAATACACAGGCAGTAAAACCCAGTAAAGATGATCGTAC
ACCAACCGTAGCAATCCGAGAAAACGAGACAACGAAAAAAGACATGGAGA
GATAAAGGAAAACGACACCAAAAAGAAACAACGACAAAGGAAGAAAACAA
GGAATAAAAAAATTATACTTTGTACTCCGGAGTATCATATACTCGAAGTA
TCGTATATCGTACGCATGCAACTACGACTTTCGTTCGACAGTTGAAAGGC
TATGTAATAGGCAGAGTATGATATGATACGCGTGATAAATGCTTTCTCGG
CCGCACAGTTCACTCTGTTGCGCACGCAGGTCTGTTGAGCACCCGTAGCT
ACCTGATTTTCCGAAAGAGCGGTCTCTACTACTGTGTGGCAGGCTGCTGT
GGTGGCAGGAGTTAGACTTCAAACCTGTGGATGGTACGTAGAGATCGTGA
GTTCGAACGTCAAGTCCGCAACATCTGTGTAGTTTTTTATTGCCTTTATT
CCCTGTTGAAAAATAAGGTTTCTGTGAGTCCACCAAAGCTCGACCTTGCA
GTACTGTAGTTGCCCACGGCGGGAAGGGGAGAATTTGGTGAAAATTGAAT
GTGTGCGTCGTAGAACGAAGGCCCGGGATCTCAGGGAGAGGAACCCTTCT
GTGTGACCCCGGCGAAATACCACCCGACTACATCAGCGAACTTCAATAGT
TGCTAGAGGAGATTGAGGCAGGAAGGAGTAGGAGTACAGAATTGACGTGG
TGAAGAATGCCTTTTTCCAAATTAATCCTTGAGTCCCGTCAAGCGTGTGA
ACCCGGACTCAATTCAACCCAAATTTTCCGACCCCTTGGATTTTGTTTCC
TGTGCTCATCTTCACTTTCTCGGCCCAGATCGAACGATAAATCTCGGCCT
GTACAACTTGTGCACCAAATTCAACCTGTGCTGGATTCTTCGGCATTTCT
TGGGTTCACGGCAGTGGCGAGCACGGTTGCGCTGTTCCTCGCCGTCATGC
AAACGGAGAGCTGGCAAGAATGGTGAGGTAACGATTAGAGGCAGGGACAG
GGAGCTGTACAGTAGAGGTAAAGATTTTCCCATGCGTGCGGACGTTAAAA
AAAAAATGATATCGAATTCCACGCGTTCGCCGTATCAACCCTTTTGAGGA
AAAAAATGTGTCCAATGCCCGCTCATGGTGTAAGTACTCGTAGGGTTCCG
GTAAAAAATCCGATACTCTTAGAGTCAGTGCACGCGCCAGTCTACTTTCT
CCAAGTCATAGTCAGCACACCTGTTCTGTCGGCGGTGGGCAGAGAGAGTA
CCTCGATTTTGCACCGAACACCGACACGCGTCTGCACGTCGCCCCAAATT
TTTGGGGATTCCCTCTCTTTTGCCCCCCCGACATCGGGAGCAGGCATAGC
TCCGACCGAGTTTGGGCAGTGCAGCTCTTGCTTGCGGCCGGAGCCGCTTC
GGAGCTGGTGTTTCGTCTTCTCGCGTGTGGGCCATCGTATTGTTCTGATT
GGTGCGTTGAAACTCTTCCTCCCGCAAAACGATTGCAGGGGCAGGAAAAG
AAAGTGCATGTATATATTGCTGTATGGGGGTTGTGTGTGTTGGCCCGTCA
CCCTGCATGTCGTCATCGGTGGCATTCTGCGTACCCTGGGAAAAAGTGTA
TGTTTCTTCTCGCGCATACTGTACCCGGCAGCGTCAACTCTCTCGACTAA
TTTAGTTCAAGCATGTGCTGTCAAGATCAAGACCTCCACTCTTGTGAAGC
TGAAATCCCCGCGAAGTTGATCTCGCGGTGTAGGTAGGTAGGCTCGTTTC
CGTTCTTGAAACCGCCTGCCGCTTTGGCCTCTCTTCCCCACCCCGACGAT
GCCTGTCCATGCATGCCGCCACCTCTGCTGTGATCTGCACATTGCCATCG
ACTTGTCAAGCGTACGGAAAGCGAAGAGAGGGGGCTGTTGCCTCCGATTT
AGAACAGCAGGAGAGTTTTCTGGGTCATTTTCGTACATCGGTGAAGTGGC
GAAGAAATATGCTCGCTCGCTCGGAACACCAAATAGTACACATACTTCGT
ATGAATACTTCTGGCCGAAATGAGACCCTTCTTTGATAGTGGTCGGTTGG
CTAGCTGGGTGATGCCTGGTCTTCGCTTTGTTTTCATACACGTCCATCGC
CCCCCGCCTCTTGCGTCTGCAGGGTGTCCTTGTTCGACACGTTTGTGGTT
GTCGGGGGAGCCTGCCTGACGGCCTCCATGAGAACAGGCTCGGCGGTGCT
TTTCCTGCGGATAGTGCGCATCGCTGCCCTGAGTGTCGGTCGCGGCTGGT
CGACGGGAGGCACCCAAGAGACGCTGGTGAGCCACCCGCTATCATAAATT
CATTGTTTGCCGGTGGTGTGACCTTCTGCCCGCCGTTCGCGTCTGCCCAC
CAGGGAGGTCGGTTGATCGACGTTCTTGCTGCATTTTTTGTCAACCTTTA
TTCGCTACATTTATGATATTATTCCGGGGGTTGACGTCATGTACGCGCTC
CTGCTGCTACTGCTGCTGCTGCTGCTGCTGCTGTGGATGCTTTTCGTAAC
CGCCCGATACGCTTTTGGTGTACCGCTTTGTTTCTGCTGCCAACGCGTGT
GTTGTTACGATAATCGGCTCTGGTGTTTTCGTGCGTTGTTGAGCGCTCTT
CGCTGCTGTTACTTGCTACAGCATGTTCGGTGGGGGGTTGGGGGACTGGC
TCGATTGTGATACCGTTTCGTTTGGTCTTTTCCACTTTTCTACGCCCGTG
AATGCCTCTCTCCAGGTCTGACCTCTGTCCCATTAACCTGCTCGAGTATT
TCCCGGAAGATGCGCTTTTAAGAGAAGTTAATGAACATGAGTCGACCTGT
GTCACATACCAAGACAGCCTCGGGCACACAGGCCAGCTTCTGTTAGGAAG
AATAAAACTGGGTGCCCGTTGTCGTCACCTGTAGGGCACGTACACAGAAG
TAGGGTCATCCTTCTCGTCTTTGACCTCCATTTGACATGTCCCGTATACA
GTTGTCTACATCGCTGCATGCACGCCGCATGGATGCGCGCCACAAACATC
TGACTGGGGCTTGAATGTATGCTGACTCCCTCTCTCTGTTGCTATCTCTA
CTCTCTGAGTTTTGAGTATTTTTGTGTGGCATCCCATTCATTGTGTCGTT
TCCCCTTGTTTTTTAACATCTATTTTGCCACCGAAGCTGTATTTTCATCT
ACCCAAGCAGCGAATTTAAGGGGTGGGAAGGCATGCGTTTCGGCAGGCAG
ACAAATGGCGATGAGCCCCGCGGTTCAAATCTGCGAAAACACAAACACAA
ACACAAGACGCAGCACACAGTTTTCGTCGCGCTGTTTTTTTGGCGTCGAA
CAGGGCGATTTAGACGAGAACCCGGCGGTGCAGCTGTACCGGTTGGTCAT
GCGCGCTATGCGAGAGTCGACTGTCTTCACCGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig734:23990..28123+

>mRNA_P-littoralis_Contig734.4.1 ID=mRNA_P-littoralis_Contig734.4.1|Name=mRNA_P-littoralis_Contig734.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=774bp|location=Sequence derived from alignment at P-littoralis_Contig734:23990..28123+ (Pylaiella littoralis U1_48)
ATGGAGGAACCAGCGTTGTGGCGACCGGCGGCTGCTGCTGAGACCAAGGA
CCGAGGGATGGAATCTACAAGGGAGTCGAAAAGCAGAATACGGAACAAGT
CCATTGCTGCTGTGCCCGCCCCTCGTAGTCAGCCGAATAGACGAATCAAG
TCTGACTTGGGAAGCAAGATGTTCATGGCGGGGTCAAGCGTGGCGAGCCG
TCCATGCCCCCGCCGAGGGAGCTTATCGATGCTGGCTTATCAGAGCAGGA
TGCTGGAGCTGGAGAAATCGGGGGCCGCCTGCGTGAGATCGAACGATAAA
TCTCGGCCTGTACAACTTGTGCACCAAATTCAACCTGTGCTGGATTCTTC
GGCATTTCTTGGGTTCACGGCAGTGGCGAGCACGGTTGCGCTGTTCCTCG
CCGTCATGCAAACGGAGAGCTGGCAAGAATGGCATAGCTCCGACCGAGTT
TGGGCAGTGCAGCTCTTGCTTGCGGCCGGAGCCGCTTCGGAGCTGGTGTT
TCGTCTTCTCGCGTGTGGGCCATCGTATTGTTCTGATTGGGTGTCCTTGT
TCGACACGTTTGTGGTTGTCGGGGGAGCCTGCCTGACGGCCTCCATGAGA
ACAGGCTCGGCGGTGCTTTTCCTGCGGATAGTGCGCATCGCTGCCCTGAG
TGTCGGTCGCGGCTGGTCGACGGGAGGCACCCAAGAGACGCTGGGCGATT
TAGACGAGAACCCGGCGGTGCAGCTGTACCGGTTGGTCATGCGCGCTATG
CGAGAGTCGACTGTCTTCACCGCG
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