mRNA_P-littoralis_Contig734.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig734.6.1
Unique NamemRNA_P-littoralis_Contig734.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig734.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig734contigP-littoralis_Contig734:35962..36507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LHP5
Preferred namepde-3
PFAMsPDEase_I
Model size548
Max annot lvl2759|Eukaryota
KEGG rclassRC00296
KEGG koko:K19021
KEGG ReactionR00191,R01234
KEGG Pathwayko00230,ko04022,ko04024,ko04924,ko05032,map00230,map04022,map04024,map04924,map05032
Hectar predicted targeting categoryother localisation
GOsGO:0000302,GO:0006935,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007275,GO:0007568,GO:0007602,GO:0007610,GO:0007635,GO:0008150,GO:0008340,GO:0009268,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009605,GO:0009628,GO:0009636,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010035,GO:0010259,GO:0010446,GO:0010468,GO:0010604,GO:0010628,GO:0010646,GO:0010648,GO:0010752,GO:0010754,GO:0019222,GO:0023051,GO:0023052,GO:0023057,GO:0032501,GO:0032502,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042542,GO:0046677,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051606,GO:0051716,GO:0060255,GO:0065007,GO:1901700,GO:1902531,GO:1902532
Exons1
Evalue0.000491
EggNOG OGsKOG3688@1|root,KOG3688@2759|Eukaryota
EC3.1.4.17
Descriptioncalmodulin-dependent cyclic-nucleotide phosphodiesterase activity
Cds size546
COG categoryL
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791519.8444083-CDS-P-littoralis_Contig734:35961..365071680791519.8444083-CDS-P-littoralis_Contig734:35961..36507Pylaiella littoralis U1_48CDSP-littoralis_Contig734 35962..36507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig734.6.1prot_P-littoralis_Contig734.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig734 35962..36507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig734.6.1

>prot_P-littoralis_Contig734.6.1 ID=prot_P-littoralis_Contig734.6.1|Name=mRNA_P-littoralis_Contig734.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=182bp
MWAAKEKMEDNSLDFVDVPSPPPAPPPPPPLPIRIMTRKSSVLKAMDFFR
GSGSSIDVDRVRRGGGDSSAGGDEKGTSGNDRIYLEGGSARPRTMEAAAA
AAAAGVSWDTSGAGRTGTTSYRKLEEGAQGGRPDLSSHGDDGSSSGAAAT
GPAAAAAAAAAGGGGQVRTASSGTTTSLEGGG
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mRNA from alignment at P-littoralis_Contig734:35962..36507+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig734.6.1 ID=mRNA_P-littoralis_Contig734.6.1|Name=mRNA_P-littoralis_Contig734.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=546bp|location=Sequence derived from alignment at P-littoralis_Contig734:35962..36507+ (Pylaiella littoralis U1_48)
ATGTGGGCCGCGAAGGAGAAAATGGAGGACAACAGCCTCGACTTCGTGGA
CGTGCCGTCGCCGCCTCCAGCACCGCCACCCCCACCACCTCTGCCAATCA
GAATCATGACCCGCAAGTCGAGCGTTCTCAAGGCGATGGATTTTTTCAGA
GGCAGCGGCAGCAGCATCGATGTAGACAGAGTCCGCCGTGGCGGCGGCGA
TAGCAGTGCGGGCGGTGACGAAAAGGGCACCAGCGGGAACGATCGAATAT
ACCTAGAAGGTGGGAGCGCACGGCCGCGCACGATGGAGGCAGCGGCGGCG
GCGGCGGCGGCGGGAGTGTCCTGGGACACTTCGGGGGCGGGGCGAACCGG
GACCACTTCGTATAGAAAACTGGAGGAAGGCGCGCAGGGGGGGAGACCAG
ATCTTAGCTCGCACGGTGACGATGGAAGCAGCAGCGGGGCGGCGGCAACA
GGGCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGAGGAGGCCAGGT
GCGAACAGCATCAAGTGGGACTACCACGAGCCTCGAAGGGGGTGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig734:35962..36507+

>mRNA_P-littoralis_Contig734.6.1 ID=mRNA_P-littoralis_Contig734.6.1|Name=mRNA_P-littoralis_Contig734.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=546bp|location=Sequence derived from alignment at P-littoralis_Contig734:35962..36507+ (Pylaiella littoralis U1_48)
ATGTGGGCCGCGAAGGAGAAAATGGAGGACAACAGCCTCGACTTCGTGGA
CGTGCCGTCGCCGCCTCCAGCACCGCCACCCCCACCACCTCTGCCAATCA
GAATCATGACCCGCAAGTCGAGCGTTCTCAAGGCGATGGATTTTTTCAGA
GGCAGCGGCAGCAGCATCGATGTAGACAGAGTCCGCCGTGGCGGCGGCGA
TAGCAGTGCGGGCGGTGACGAAAAGGGCACCAGCGGGAACGATCGAATAT
ACCTAGAAGGTGGGAGCGCACGGCCGCGCACGATGGAGGCAGCGGCGGCG
GCGGCGGCGGCGGGAGTGTCCTGGGACACTTCGGGGGCGGGGCGAACCGG
GACCACTTCGTATAGAAAACTGGAGGAAGGCGCGCAGGGGGGGAGACCAG
ATCTTAGCTCGCACGGTGACGATGGAAGCAGCAGCGGGGCGGCGGCAACA
GGGCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGAGGAGGCCAGGT
GCGAACAGCATCAAGTGGGACTACCACGAGCCTCGAAGGGGGTGGT
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