mRNA_P-littoralis_Contig733.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig733.4.1
Unique NamemRNA_P-littoralis_Contig733.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig733.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig733contigP-littoralis_Contig733:2953..8583 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size166
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791519.3098068-CDS-P-littoralis_Contig733:2953..30341680791519.3098068-CDS-P-littoralis_Contig733:2953..3034Pylaiella littoralis U1_48CDSP-littoralis_Contig733 2954..3034 -
1680791519.3241174-CDS-P-littoralis_Contig733:8499..85831680791519.3241174-CDS-P-littoralis_Contig733:8499..8583Pylaiella littoralis U1_48CDSP-littoralis_Contig733 8500..8583 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig733.4.1prot_P-littoralis_Contig733.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig733 2954..8583 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig733.4.1

>prot_P-littoralis_Contig733.4.1 ID=prot_P-littoralis_Contig733.4.1|Name=mRNA_P-littoralis_Contig733.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=55bp
SGQHPGVVPYRIPTTLDVAGTSVSPTKERCGMEVTALRDALGQHDEEHDS
GVSPS
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mRNA from alignment at P-littoralis_Contig733:2953..8583-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig733.4.1 ID=mRNA_P-littoralis_Contig733.4.1|Name=mRNA_P-littoralis_Contig733.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5631bp|location=Sequence derived from alignment at P-littoralis_Contig733:2953..8583- (Pylaiella littoralis U1_48)
TCAGGGCAGCACCCCGGGGTAGTTCCCTACCGAATTCCGACTACCCTCGA
CGTCGCAGGCACTAGCGTCTCGCCCACGAAGGAGGTTAGTCTCATACACC
CGGTGCCGTCAGTATATGTCTCAGGCTCTCTTGGATAGAAGTCCGTTGGG
AAATCGGACTTGTGTATAAACGCTGAACGTGTGCATGGGTCGCTCTTGTC
GTTGGGTGAAGTAGAGAGGCCTTCACCAGCCTCACCAAGGAGTGTATTAT
TCCATGTCAAACGTACGAGTGAGAGGAGAGGCATCTCCTCTCTCATCGGC
GGGAAACATAATTCCCCGCTTTTCCACCTCTACCTCCCGCAGCACTGTCA
TCCTAGGTGAACATGCCTTCTACTCCGTCACCAAACCCACTACGCAGATC
TCCTCTGGACTACATCTATAGACTGGGCACGAGCACAATTCGATTAGCCC
CCCTGCTCGTGGCTCAGCCCTAATAGTTCGTCCTGGAGACAGAATACCAG
AAGAAAAACTCAATAGTCAACACTCAAACAAACATAAATCCGACACATGA
TATCCCCCTTGCCGTATCAAACTCAAATCATTGCTGACACTACATTGAAG
TTTAACGGCAACTCTTTCTACAGTATAGTTTTCAATCTAAATAAAATTCC
GTCACCACAAAATACGAGAAATAACTCATTCCAAGCACACAGCAGTGAAG
CATAGTTCAGTAAATCAGCTCCCCTGCTAGCATACGTCTCTTCTTGTAGT
CCAAAACTCGATGAGACCAGGTGAGAGTGAAAACTTCAAACTCCCTCGCT
GTCTTCATCGTCACCCTATCATGCCGTGGGTAAACGCTTGTAAACCAAAA
CAAAACTCTACAAGCAGTCGAAATACTCTGGTCAAAATTAGCGGTTGATC
ACTCCATTCATTTTGAAACCATTGATTTTCAACGACAAACTCGTCTCATT
TGTTGCTACGGAATTCCCCAACAGAATGATCTTCACCAAATTCTTCCACG
AAATTCTCCTTGGTTAGACGCAAAATCATCATCTCGAAAACAAAAATACC
CTCAAAGAAATAATTTCATTCTCCGTGGACGATAAATCCAACAAAGAATG
AAATTCGATGTGGGCCAGTGGCGGCAAATTGGAATAATATTGGCACTGCA
GATTACCAATCAGCTACTCTGAAAAACGGCCCCCCTGATCCAAGAATGCC
CTCATGTTTTGTCGGACAACACCAGCTGGCAACAGCCCCCCTTGATAAGA
TATTGTCCTCGATACAAAGAAAGTACTACATTTAGGCACGGGCACAACGG
GATTAATATGTCGGTCTCGCATGATGAAACGCCAACAGATATCAAAGTTT
TCGTGACACCATAAAACAAAACTCTACATTCAGAATGCCTGTAAGCAGCT
GCTCTCGTCGCGGAGAAAAACTGCAGGTTAAAACCAGGCCACACCCCCTC
CGATTTCTAAGGAGATGTCGAACCGAACTGCAAGAAACAAAGTTATATAA
TTCAAACTTTTATTGTGTTGAGACGAGTACCGTGGTATCAAATCCCCCCC
CATTGTACTCGACAGCATTACAGGATGCTTTTCAACCAACATGGCATCAC
GCAAAAAATCGAAGCCAACGAATGATCAAAGTCAAACACCAAAACTGAAT
TCCAAGTCAAAACCAAAATCCAAAATCAGATCCAAAACCAAAACCAAAAC
CAAATCCAAAATCCAAAAACAAATCCAAAACCAAATCCAAAACCAAATCC
AAAACCAAATCCAAAATCAAATCCGCACGTTTTGACCATTGCCTTGGCCA
CTGCTTTTCTCCCCAGGCGGGTGCATTTTCACAACCTCCGCCGCGGCCGC
TATTCTTTCTTGCTGGCGTTGCTGCGGCTCGGGCTTCGTCACATTTCCAT
ATCCGCCTGGGGTGAAATAACAGTTGTCTCTCCCGCAAAGGATCGAAACT
CGGCAGTAACGTCGGGCAGGTCACGCGTTCGGGAGGGGAAATTCGGCAAA
TAAGTCGTCTGTTGCGATAGAAAAACGGTGCGTTGACATGACGAAATACT
GCATACAATATCCCTCCCATGGATTGCTCAAATCGAAAAACATAAAGCCA
ATACTGTGTAGAATCAAATACGCAATACCCCCGGTTCTGTGCAGTATTGT
GCGAACGGAAAAATAATTCCCGAGGGGATGCGCAAGACTCTGCATGTACA
GCAGTCTACCACCATCAATCCTGGTTTATTCAGCAAAATGTGAAATCAGA
TTCCAAACTCGAAAAAAAAACTAAACTCGGCACATACACATCAGTTCACT
TTGTGCGGTACTCACGATGCCGTTGTCAATAAAACAATTTCCAACGCCAA
GGTGAGTGTGAGCAAATGTGGCGATTTCGTGAAAAATTCCAACAAACGCA
GCGTAGAGAAACATTGTGCACGCCGGTTGTGTCTGTAAAGTGAGACGCTG
GAATGCCGATGAAATGATGCTGCAAACAAACAAATTCCGAGATAAAAAAT
GAAGAACTTTATCGTTGCGAAGTGATATCGAACCATAAAACAGGAGTACC
GCATGCTTGCAAAACGTGCAAAGATAATGAACATGCTGAATCTCTCTCAG
CGAGATATGCTGAAAATATCTCGATGACACAGCAGTTGCGAACTCCAAAA
TGCCAAAACAAATCAGCTCAAATTACCAGCACAACGACCAGCACAACTAA
GTTGTGAAACGAAATACACGAAAGAAAAATCACACGAAATAATTCTCCAT
GACCCAACAGCTACTGCCGTAGAAAACAAATTTCAACAAGCACAAAACAA
ACAATTCAAATCAAAAGAAACAAAATAACGTGCCTTGGGCGGGTTTGAAA
CCCTAGCAGAAGGCGCGTCCCGGCGGTGATGTGCTGCTTTCCACCTCCAA
AAGCCCATCACCCAAAACAAGCTCGCTCGCCCACCAGCCAAGCACCACGC
CCGAAGGCTTTCCGCGGTCAAAAGGCTGCTCCACTCCCAGAAGCGCCTCT
AATCTCCCCGCGCTTCGCGATGGGCGCTTCCCCGGGTCAAAGGGGTGATT
CGAAGGTCCACACCATGTCTCGTTTAACTCCTCATGGGAGTCGTTGCTGC
TTCTGCGGTCCTCTGCTCTGTCGCTGCTACTGCTACTGCTACTGCTACTG
CTGTGGTCGTTTTCATGGGCGCTGACGTCTGCGTCGTCTTTGCCGGGGTC
GAAGGGGTGAGTTGCCCCCAGCCATCATCACTGCTGTCCTCTGGGTCGTC
ACTGCTACTGTTACTGCTGTGGCTGCTGCTGCTGCGGCTGCTGCTGTCCG
TGGCGCTGCCGCTGTCGATGCTGCTGCTACTGCTGTTGTTGCTGCTGCTG
TTACGGTCCCCTGCGCTGTCGCTGTCGATGCTGCTGCTACTGTTGTCGCG
GTCGTCTACACTGGCGCTGCCCACTCCATCGTCCTCACTGCGGTGACCTC
GCACACCGCTCGAGCTGTCGCAGGGATATACGGCGATGACCGGTGACTTG
ATGGCGGCCGCGGTGGCCCAGGCGGAGGCGAGATCGCTCCGGCGGCGACC
GACCACGGCGACGGAATCACAGACGCGAGCGGCGGTGCCGACGGGCTCGA
CAGCGGCGGCGGTGGCGGCGGCGAGGACGGTGGCACATGCTGAACCGGCG
GTAGCTTCTGGCTGAACGGCGGCAGAATCAGCCACGGGGACGGCGTCGGG
GACGGCCTCGCAGTCTAGAGCGGCGGCAACGACGGGCTCGACGGCGGCAG
CGGTGGCGGCCGGAACGGTGGTAAAGGCTGAAACGGAGGTTGCTGCTGGC
TGGACGGCCGCGGCGACAGGAACGGCGTTGCAGGCTTGGGCGGGCTTGTC
GGCGGCGAAGTAATCGGCAGCGCAGTTGGTGAAGTAATCGGTAACGCTGT
CGTAAGAGGCGAGGGTATCGGCGAGGCTGATCGCTGCCTTAACGGTGGGT
TCTGCTTTGGCTGCGTCGATTCTCCAATGTGCTTTCCATACTCCAATTAT
CATGGATGCACACCGCCTTTTGTCCCCCTCCAACTTCCACTCAAATTCTG
CATGGCGTAGCGTAAACCTTGGGTTCTGGAAGGCAGGGCAGATGCCAGGT
TCGTAGTTTATTGTAGGAACGGCTGGCCCACCACGTCTCGATCTCCTGAA
CCTTATCCGTAATGACTTCGTCCACTCTTTGCCTCAAGTTCTGTTCTATT
GTCCTCCAAGCTGCAAGCTCTGCTGGTGTCGTACAACCTAACGGGGCCAA
TGTCGAGGCTCGCCATCGCTCATTTGATATCTGGTTTTTCACATACTCCA
GCTCTTCTTGTGTCTTCCTCCATACTTGTTCTTTACACATAAAATCATCC
ATCACTACTCACTACTTGTTTATGAATGCCGGTACCTCCTCGGCTGTCCA
AGCGATGTATTGGGGTCCGTTTCTCTCTCCCGGATGGCAGGGCGTGGCTT
GTGCTCTCTTGCCTCTAACTGGGCGTGGCTTCTTGCTCTCTTGCCTCTTG
CTCTCTTCCGGTTGGGTTCGTACCTCTCGGTCTCTCGCTGTTATCTTCGA
TCTTCTTGTCTCCCTCCGCAGAGCTATGTCGAATGCGGGGTCTTCTTGTT
TCTCTCTTGCCTCTAACTGGGCGCCTCTTCTTGTTCCTCTTTCTTGCCTT
TCTCGCGCTGCGTGATAAGTACGCACGCGTCCGTGGCCTCTCCTGAGTGA
GAGGGACTCGTCCACGGGAAGCTCCTTGTATCTACCTCGGTCGCAAAACC
GAACCCTAGCCAACCTTCACACACACGTCCGTAGACTGTCTAAATCGCTA
GCGTAAACGCTGAACGTGTGCATGGGTCGCTCTTGTCGTTGGGTGAAGTA
GAGAGGCCTTCACCAGCCTCACCAAGGAGTGTATTATTCCATGTCAAACG
TACGAGTGAGAGGAGAGGCATCTCCTCTCTCATCGGCGGGAAACATAATT
CCCCGCTTTTCCACCTCTACCTCCCGCAGCACTGTCATCCTAGGTGAACA
TGCCTTCTACTCCGTCACCAAACCCATTACGCAGATCTCCTCTGGACTAC
ATCTATAGACTGGGCACGATTAGCACAACTTCGATTCTCACCGTGTCGAG
AGGACCCTGAGCGTTCGCCAGAAGCAGGTTGAAAAACAATCGATAACGAA
GTACTGCTGTAGAGGAGAAAAATCAACGCATGGCGTGTAATCAACCCTCC
ACCACCACCGCCCACCGCGCGCTACGCGAGAGAACGCCTAGTTTCTGCGG
GTGAACAGAACAAACTTAGGGTTGCAGAAGATTTCTCGGGTTCAACCTTG
GTGCTGTGTTGTGTATCGGAGACAACTATTTTTTGTAGTAAAACCGGACT
CCAATTTCGCCACCGCACCTACCGTCGCTGCTTCTCAGTGCTGCTGGCCG
TGTTCCCTATCTATCTATGCTTTGGCGGCTGCCTTCCTCTTCACGTTGGA
ATTAACATAGACTAGTTGTTCGACCACTAGTACGAAAAAGAAGGGCAGAC
TCATCCCGCCTTCACACGAATAAATTTGTTGCTGACTGTTTCCCCACAGA
GGTGCGGCATGGAAGTAACTGCGCTGCGGGACGCACTCGGACAACATGAC
GAAGAACATGACAGCGGTGTATCTCCTTCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig733:2953..8583-

>mRNA_P-littoralis_Contig733.4.1 ID=mRNA_P-littoralis_Contig733.4.1|Name=mRNA_P-littoralis_Contig733.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=165bp|location=Sequence derived from alignment at P-littoralis_Contig733:2953..8583- (Pylaiella littoralis U1_48)
TCAGGGCAGCACCCCGGGGTAGTTCCCTACCGAATTCCGACTACCCTCGA
CGTCGCAGGCACTAGCGTCTCGCCCACGAAGGAGAGGTGCGGCATGGAAG
TAACTGCGCTGCGGGACGCACTCGGACAACATGACGAAGAACATGACAGC
GGTGTATCTCCTTCC
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