mRNA_P-littoralis_Contig733.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig733.2.1
Unique NamemRNA_P-littoralis_Contig733.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig733.2.1 vs. uniprot
Match: A0A6H5K201_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K201_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 5.560e-5
Identity = 30/65 (46.15%), Postives = 37/65 (56.92%), Query Frame = 2 
Query:    2 NDPSVLEAGFKTAREEIVLHYLCCIINHVEE----ELYNFFAEEQKNAIAFKLGYPSQKYLVANP 184
            N P VLE GFK   EE  LHYL CIINHVEE    +  +  AEE +   A     PS++Y ++ P
Sbjct:  120 NQPEVLEQGFKMYPEEKALHYLSCIINHVEEVGVVQGVHERAEEFRGRGAL---VPSERYQISRP 181
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig733.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K201_9PHAE5.560e-546.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig733contigP-littoralis_Contig733:1136..1728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size256
Hectar predicted targeting categoryother localisation
Exons2
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791519.2181146-CDS-P-littoralis_Contig733:1135..12961680791519.2181146-CDS-P-littoralis_Contig733:1135..1296Pylaiella littoralis U1_48CDSP-littoralis_Contig733 1136..1296 -
1680791519.2300446-CDS-P-littoralis_Contig733:1634..17281680791519.2300446-CDS-P-littoralis_Contig733:1634..1728Pylaiella littoralis U1_48CDSP-littoralis_Contig733 1635..1728 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig733.2.1prot_P-littoralis_Contig733.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig733 1136..1728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig733.2.1

>prot_P-littoralis_Contig733.2.1 ID=prot_P-littoralis_Contig733.2.1|Name=mRNA_P-littoralis_Contig733.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=85bp
KRPQCVGGRVQDSAGGDCIALPMLHHQSRGGGVVQLLRGRAEKCHRLQAR
VPESKISGCKSYSITSTSMWAGSDVTRAKGQAPT*
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mRNA from alignment at P-littoralis_Contig733:1136..1728-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig733.2.1 ID=mRNA_P-littoralis_Contig733.2.1|Name=mRNA_P-littoralis_Contig733.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=593bp|location=Sequence derived from alignment at P-littoralis_Contig733:1136..1728- (Pylaiella littoralis U1_48)
AAACGACCCCAGTGTGTTGGAGGCAGGGTTCAAGACAGCGCGGGAGGAGA
TTGTATTGCACTACCTATGCTGCATCATCAATCACGTGGAGGAGGTGGGT
TGTGTCGGTGGTCAAAAGGAAGTGAGGAAGACATACCAGACGAAATTTGC
CCAAGGATTACAATCTCCATTCCGCAGCCGTAGTTGATTAAGACATAAAC
TCCATCCTCCCTCGGTACATTACAGCGCTGTGTATTTTGTATCGTCGGGG
TACGCTATCTTTCTGATTCCTTGTGTGTTGGAGCAATCATCGCTCCGAGC
GCTTAGTTTTGGAGACAACCATTCTGATTTTCTCTTCTATAGCTTGGACT
CGACGGCCACGTAGCTGAGGCACCCTCCCCGTGCCCGCGCTCCTCTCCTC
GAACCGCTCCCCGTCCCCCCCCGTTGCTGCAGGAGTTGTACAACTTCTTC
GCGGAAGAGCAGAAAAATGCCATCGCCTTCAAGCTCGGGTACCCGAGTCA
AAAATATCTGGTTGCAAATCCTACTCGATTACCTCGACGAGTATGTGGGC
GGGTTCAGATGTGACTCGGGCGAAGGGGCAGGCCCCAACGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig733:1136..1728-

>mRNA_P-littoralis_Contig733.2.1 ID=mRNA_P-littoralis_Contig733.2.1|Name=mRNA_P-littoralis_Contig733.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=255bp|location=Sequence derived from alignment at P-littoralis_Contig733:1136..1728- (Pylaiella littoralis U1_48)
AAACGACCCCAGTGTGTTGGAGGCAGGGTTCAAGACAGCGCGGGAGGAGA
TTGTATTGCACTACCTATGCTGCATCATCAATCACGTGGAGGAGGAGTTG
TACAACTTCTTCGCGGAAGAGCAGAAAAATGCCATCGCCTTCAAGCTCGG
GTACCCGAGTCAAAAATATCTGGTTGCAAATCCTACTCGATTACCTCGAC
GAGTATGTGGGCGGGTTCAGATGTGACTCGGGCGAAGGGGCAGGCCCCAA
CGTGA
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