mRNA_P-littoralis_Contig732.26.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig732.26.1
Unique NamemRNA_P-littoralis_Contig732.26.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig732.26.1 vs. uniprot
Match: A0A6H5JJD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJD8_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.500e-24
Identity = 58/78 (74.36%), Postives = 65/78 (83.33%), Query Frame = 1 
Query:  211 MAAVQGNAGSTTLS---VEGAGGA-GDSLGGNASEPVTESVPALRSPPETQAAVDAGNGKTVQVTLEEPMEGKRRFSS 432
            MAA QGNAGS++ S   VEGAGGA GD L GN+ EPV ESVP L+SPPETQA+VDAGNGKTVQVTLEEP+EGKR  +S
Sbjct:    1 MAAAQGNAGSSSCSSSSVEGAGGAAGDELSGNSREPVAESVPVLQSPPETQASVDAGNGKTVQVTLEEPVEGKRMLTS 78
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BLAST of mRNA_P-littoralis_Contig732.26.1 vs. uniprot
Match: A0A6H5K3Z9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Z9_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.620e-19
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 1 
Query:  211 MAAVQGNAGSTTLS-VEGAGGA-GDSLGGNASEPVTESVPALRSPPETQAAVDAGNGKTVQVTLEEPMEGKRRFSSRVLEYA 450
            MAAVQGNAG T+ S VE AG A GDS+ G+ SE V  SVP L+ PPE++A++D G GKTV+VTLEEPMEGKRR +S    +A
Sbjct:    1 MAAVQGNAGGTSSSSVEAAGAAAGDSVDGDGSESVVPSVPVLQVPPESEASIDVGKGKTVKVTLEEPMEGKRRLTSWTWNFA 82
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BLAST of mRNA_P-littoralis_Contig732.26.1 vs. uniprot
Match: A0A6H5KVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP4_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.360e-19
Identity = 55/85 (64.71%), Postives = 65/85 (76.47%), Query Frame = 1 
Query:  202 TRKMAAVQGNAGST-TLSVEGAGGA-GDSLGGNASEPVTESVPALRSPPETQAAVDAGNGKTVQVTLEEPMEGKRRFSSRVLEYA 450
            TRKMAAVQGNAG T T SVE AG A GDS+ G+ SE V  SVP L+ PPE++A++D G GKTV+VTLEEPMEGKRR +S    +A
Sbjct: 1082 TRKMAAVQGNAGGTSTSSVEAAGAAAGDSVDGDGSESVVPSVPVLQVPPESEASIDVGKGKTVKVTLEEPMEGKRRLTSWTWNFA 1166
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BLAST of mRNA_P-littoralis_Contig732.26.1 vs. uniprot
Match: A0A6H5JE87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE87_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 4.510e-18
Identity = 50/82 (60.98%), Postives = 62/82 (75.61%), Query Frame = 1 
Query:  211 MAAVQGNAGSTTLS-VEGAGGA-GDSLGGNASEPVTESVPALRSPPETQAAVDAGNGKTVQVTLEEPMEGKRRFSSRVLEYA 450
            MAAVQGNAG T+ S VE AG A GDS+ G+ SE V  SVP L+ PPE++A++D G GKTV+VTL+EPMEGKRR +S    +A
Sbjct:    1 MAAVQGNAGGTSSSSVEAAGAAAGDSVDGDGSESVVPSVPVLQVPPESEASIDVGKGKTVKVTLKEPMEGKRRLTSWTWNFA 82
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BLAST of mRNA_P-littoralis_Contig732.26.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 5.750e-17
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 1 
Query:  211 MAAVQGNAGSTTLS-VEGAGGA-GDSLGGNASEPVTESVPALRSPPETQAAVDAGNGKTVQVTLEEPMEGKRRFSSRVLEYA 450
            MAAVQGNAG T+ S VE AG A GDS+ G+ SE V  SVP L+ PPE++A++D G GKTV+VTLEEPMEGKRR +S    +A
Sbjct:    1 MAAVQGNAGGTSSSSVEAAGAAAGDSVDGDGSESVVPSVPVLQVPPESEASIDVGKGKTVKVTLEEPMEGKRRLTSWTWNFA 82
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig732.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JJD8_9PHAE1.500e-2474.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3Z9_9PHAE1.620e-1962.20Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KVP4_9PHAE2.360e-1964.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JE87_9PHAE4.510e-1860.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGG8_9PHAE5.750e-1762.20Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig732contigP-littoralis_Contig732:96153..96652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size501
Hectar predicted targeting categorysignal peptide
Exons1
Cds size498
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791519.1800034-CDS-P-littoralis_Contig732:96154..966521680791519.1800034-CDS-P-littoralis_Contig732:96154..96652Pylaiella littoralis U1_48CDSP-littoralis_Contig732 96155..96652 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig732.26.1prot_P-littoralis_Contig732.26.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig732 96155..96652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig732.26.1

>prot_P-littoralis_Contig732.26.1 ID=prot_P-littoralis_Contig732.26.1|Name=mRNA_P-littoralis_Contig732.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=166bp
RHPVFFCLFFSAFSLFSFLSSFGFIGLVCCFSVEPIFLLCGLWELSCFAA
CSHTRTHAVPACVRFSRTRKMAAVQGNAGSTTLSVEGAGGAGDSLGGNAS
EPVTESVPALRSPPETQAAVDAGNGKTVQVTLEEPMEGKRRFSSRVLEYA
LSSWHVPGFRSHLSVR
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mRNA from alignment at P-littoralis_Contig732:96153..96652-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig732.26.1 ID=mRNA_P-littoralis_Contig732.26.1|Name=mRNA_P-littoralis_Contig732.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=500bp|location=Sequence derived from alignment at P-littoralis_Contig732:96153..96652- (Pylaiella littoralis U1_48)
CGGCATCCTGTGTTTTTTTGTCTTTTTTTTTCTGCTTTTTCTTTATTTTC
TTTTTTGTCTTCGTTTGGTTTTATCGGGCTGGTTTGTTGCTTTTCGGTAG
AACCTATTTTTCTGCTGTGTGGCCTTTGGGAGCTTTCTTGTTTCGCGGCC
TGCAGCCACACACGCACACACGCGGTCCCAGCGTGCGTGCGGTTCAGCAG
AACCAGAAAGATGGCAGCTGTACAGGGGAATGCCGGTAGTACTACTCTCA
GTGTCGAGGGTGCTGGTGGTGCTGGCGATTCGTTGGGTGGGAATGCAAGT
GAACCGGTGACTGAGAGCGTGCCAGCGTTGCGAAGCCCACCGGAGACTCA
AGCCGCGGTCGACGCTGGCAACGGCAAAACCGTGCAAGTCACACTTGAAG
AGCCTATGGAGGGCAAAAGGAGGTTTTCTTCGAGAGTACTAGAGTACGCC
TTGTCGTCTTGGCATGTTCCTGGTTTTCGATCGCATCTATCTGTCCGTCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig732:96153..96652-

>mRNA_P-littoralis_Contig732.26.1 ID=mRNA_P-littoralis_Contig732.26.1|Name=mRNA_P-littoralis_Contig732.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=498bp|location=Sequence derived from alignment at P-littoralis_Contig732:96153..96652- (Pylaiella littoralis U1_48)
CGGCATCCTGTGTTTTTTTGTCTTTTTTTTTCTGCTTTTTCTTTATTTTC
TTTTTTGTCTTCGTTTGGTTTTATCGGGCTGGTTTGTTGCTTTTCGGTAG
AACCTATTTTTCTGCTGTGTGGCCTTTGGGAGCTTTCTTGTTTCGCGGCC
TGCAGCCACACACGCACACACGCGGTCCCAGCGTGCGTGCGGTTCAGCAG
AACCAGAAAGATGGCAGCTGTACAGGGGAATGCCGGTAGTACTACTCTCA
GTGTCGAGGGTGCTGGTGGTGCTGGCGATTCGTTGGGTGGGAATGCAAGT
GAACCGGTGACTGAGAGCGTGCCAGCGTTGCGAAGCCCACCGGAGACTCA
AGCCGCGGTCGACGCTGGCAACGGCAAAACCGTGCAAGTCACACTTGAAG
AGCCTATGGAGGGCAAAAGGAGGTTTTCTTCGAGAGTACTAGAGTACGCC
TTGTCGTCTTGGCATGTTCCTGGTTTTCGATCGCATCTATCTGTCCGT
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