mRNA_P-littoralis_Contig730.39.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig730.39.1
Unique NamemRNA_P-littoralis_Contig730.39.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig730.39.1 vs. uniprot
Match: D7G427_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G427_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 4.960e-22
Identity = 47/55 (85.45%), Postives = 50/55 (90.91%), Query Frame = 1 
Query:    1 QVGLVTIGQGGKVQIGVKAFGEEKPNFNTSLQETGDLGERIEGSATAPAHSRHRL 165
            +VGLVT+G+ GKVQIGV AFGEEKPNFN SLQET DLGERIEGSATAPAHS HRL
Sbjct:  516 EVGLVTMGESGKVQIGVTAFGEEKPNFNPSLQETKDLGERIEGSATAPAHSGHRL 570
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig730.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G427_ECTSI4.960e-2285.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig730contigP-littoralis_Contig730:142847..143014 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G427
Model size168
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue8.14e-23
EggNOG OGsKOG4199@1|root,KOG4199@2759|Eukaryota
Descriptionhematopoietic progenitor cell differentiation
Cds size168
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791517.9268334-CDS-P-littoralis_Contig730:142846..1430141680791517.9268334-CDS-P-littoralis_Contig730:142846..143014Pylaiella littoralis U1_48CDSP-littoralis_Contig730 142847..143014 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig730.39.1prot_P-littoralis_Contig730.39.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig730 142847..143014 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig730.39.1

>prot_P-littoralis_Contig730.39.1 ID=prot_P-littoralis_Contig730.39.1|Name=mRNA_P-littoralis_Contig730.39.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=56bp
QVGLVTIGQGGKVQIGVKAFGEEKPNFNTSLQETGDLGERIEGSATAPAH
SRHRL*
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mRNA from alignment at P-littoralis_Contig730:142847..143014-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig730.39.1 ID=mRNA_P-littoralis_Contig730.39.1|Name=mRNA_P-littoralis_Contig730.39.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=168bp|location=Sequence derived from alignment at P-littoralis_Contig730:142847..143014- (Pylaiella littoralis U1_48)
CAGGTGGGCTTGGTGACGATTGGACAGGGTGGAAAAGTCCAAATTGGAGT
GAAAGCGTTCGGAGAAGAGAAGCCCAACTTCAACACTTCTCTGCAAGAAA
CTGGAGACCTGGGCGAGAGAATCGAGGGCTCCGCCACGGCCCCCGCGCAC
TCCAGGCACCGACTCTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig730:142847..143014-

>mRNA_P-littoralis_Contig730.39.1 ID=mRNA_P-littoralis_Contig730.39.1|Name=mRNA_P-littoralis_Contig730.39.1|organism=Pylaiella littoralis U1_48|type=CDS|length=168bp|location=Sequence derived from alignment at P-littoralis_Contig730:142847..143014- (Pylaiella littoralis U1_48)
CAGGTGGGCTTGGTGACGATTGGACAGGGTGGAAAAGTCCAAATTGGAGT
GAAAGCGTTCGGAGAAGAGAAGCCCAACTTCAACACTTCTCTGCAAGAAA
CTGGAGACCTGGGCGAGAGAATCGAGGGCTCCGCCACGGCCCCCGCGCAC
TCCAGGCACCGACTCTGA
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