mRNA_P-littoralis_Contig730.36.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig730.36.1
Unique NamemRNA_P-littoralis_Contig730.36.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig730.36.1 vs. uniprot
Match: A0A6D2KMT4_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KMT4_9BRAS)

HSP 1 Score: 56.2 bits (134), Expect = 3.880e-6
Identity = 39/143 (27.27%), Postives = 67/143 (46.85%), Query Frame = 1
Query:   82 CYNCRGIGHFARDCTVKI--CKRCQGRGHDEDKCGSPADMRTNLAVELPDCDSGSAVGL-EPWHVDSGASGTVTRSSRMMTNFRPCN--KLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCV 495
            CY C  +GHF +DC VK+      + + H ED+     D      VE     + +   L   W VDSG S  +T + ++ ++ +  +  + +   DN  H+++  G I ++   + G  +  +KN  +VP    NLLS+   V
Sbjct:  248 CYRCGKLGHFKKDCRVKLKETNMAESKSHTEDE-----DWGKCFTVEAASSGTSTTKNLGNDWIVDSGCSHHITGNEKLFSSLQRHDGKEAIITADNSIHRVEKEGTIVIE--GEEGGPI-TLKNVYHVPGVKKNLLSVVNAV 382          
BLAST of mRNA_P-littoralis_Contig730.36.1 vs. uniprot
Match: A0A6D2KKQ4_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KKQ4_9BRAS)

HSP 1 Score: 56.2 bits (134), Expect = 3.890e-6
Identity = 39/143 (27.27%), Postives = 67/143 (46.85%), Query Frame = 1
Query:   82 CYNCRGIGHFARDCTVKI--CKRCQGRGHDEDKCGSPADMRTNLAVELPDCDSGSAVGL-EPWHVDSGASGTVTRSSRMMTNFRPCN--KLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCV 495
            CY C  +GHF +DC VK+      + + H ED+     D      VE     + +   L   W VDSG S  +T + ++ ++ +  +  + +   DN  H+++  G I ++   + G  +  +KN  +VP    NLLS+   V
Sbjct:  248 CYRCGKLGHFKKDCRVKLKETNMAESKSHTEDE-----DWGKCFTVEAASSGTSTTKNLGNDWIVDSGCSHHITGNEKLFSSLQRHDGKEAIITADNSIHRVEKEGTIVIE--GEEGGPI-TLKNVYHVPGVKKNLLSVVNAV 382          
BLAST of mRNA_P-littoralis_Contig730.36.1 vs. uniprot
Match: A0A6D2KB33_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KB33_9BRAS)

HSP 1 Score: 56.2 bits (134), Expect = 4.060e-6
Identity = 39/143 (27.27%), Postives = 67/143 (46.85%), Query Frame = 1
Query:   82 CYNCRGIGHFARDCTVKI--CKRCQGRGHDEDKCGSPADMRTNLAVELPDCDSGSAVGL-EPWHVDSGASGTVTRSSRMMTNFRPCN--KLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCV 495
            CY C  +GHF +DC VK+      + + H ED+     D      VE     + +   L   W VDSG S  +T + ++ ++ +  +  + +   DN  H+++  G I ++   + G  +  +KN  +VP    NLLS+   V
Sbjct:  248 CYRCGKLGHFKKDCRVKLKETNMAESKSHTEDE-----DWGKCFTVEAASSGTSTTKNLGNDWIVDSGCSHHITGNEKLFSSLQRHDGKEAIITADNSIHRVEKEGTIVIE--GEEGGPI-TLKNVYHVPGVKKNLLSVVNAV 382          
BLAST of mRNA_P-littoralis_Contig730.36.1 vs. uniprot
Match: A0A6D2JWG0_9BRAS (Uncharacterized protein n=10 Tax=Coluteocarpeae TaxID=1394505 RepID=A0A6D2JWG0_9BRAS)

HSP 1 Score: 56.2 bits (134), Expect = 4.130e-6
Identity = 39/143 (27.27%), Postives = 67/143 (46.85%), Query Frame = 1
Query:   82 CYNCRGIGHFARDCTVKI--CKRCQGRGHDEDKCGSPADMRTNLAVELPDCDSGSAVGL-EPWHVDSGASGTVTRSSRMMTNFRPCN--KLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCV 495
            CY C  +GHF +DC VK+      + + H ED+     D      VE     + +   L   W VDSG S  +T + ++ ++ +  +  + +   DN  H+++  G I ++   + G  +  +KN  +VP    NLLS+   V
Sbjct:  248 CYRCGKLGHFKKDCRVKLKETNMAESKSHTEDE-----DWGKCFTVEAASSGTSTTKNLGNDWIVDSGCSHHITGNEKLFSSLQRHDGKEAIITADNSIHRVEKEGTIVIE--GEEGGPI-TLKNVYHVPGVKKNLLSVVNAV 382          
BLAST of mRNA_P-littoralis_Contig730.36.1 vs. uniprot
Match: A0A6D2KB39_9BRAS (ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KB39_9BRAS)

HSP 1 Score: 56.2 bits (134), Expect = 4.240e-6
Identity = 39/143 (27.27%), Postives = 67/143 (46.85%), Query Frame = 1
Query:   82 CYNCRGIGHFARDCTVKI--CKRCQGRGHDEDKCGSPADMRTNLAVELPDCDSGSAVGL-EPWHVDSGASGTVTRSSRMMTNFRPCN--KLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCV 495
            CY C  +GHF +DC VK+      + + H ED+     D      VE     + +   L   W VDSG S  +T + ++ ++ +  +  + +   DN  H+++  G I ++   + G  +  +KN  +VP    NLLS+   V
Sbjct:  522 CYRCGKLGHFKKDCRVKLKETNMAESKSHTEDE-----DWGKCFTVEAASSGTSTTKNLGNDWIVDSGCSHHITGNEKLFSSLQRHDGKEAIITADNSIHRVEKEGTIVIE--GEEGGPI-TLKNVYHVPGVKKNLLSVVNAV 656          
BLAST of mRNA_P-littoralis_Contig730.36.1 vs. uniprot
Match: T1J0W8_STRMM (Uncharacterized protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1J0W8_STRMM)

HSP 1 Score: 55.1 bits (131), Expect = 9.820e-6
Identity = 41/151 (27.15%), Postives = 65/151 (43.05%), Query Frame = 1
Query:   79 MCYNCRGIGHFARDCTVKICKRCQGRGHDE-----DKCGSPADMRTNLAVELPDCDSGSAVGL------EPWHVDSGASGTVTRSSRMMTNFRPCNKLVAGPDNVTHQIKGRGDIAVDLKSDVGSML--MAVKNAAYVPTFAYNLLSMSQC 492
             C+NC G+GHFA+DC     KR     ++      DK  S    +       P  DS   V L      + +++DS  +  V  +  +  NF+    +          I+G GDI + +  D+  +   + +KN  Y P F  NL+S S+C
Sbjct:  263 QCFNCSGLGHFAKDCPSPRKKRDNRNANNSVVKNSDKVLSVKSGKRGAFYAHPIFDSHDTVALSSVLSNDTFYLDSACTNHVCSNKSLFVNFKSIKPVPLELGEGYSSIEGIGDIEL-ITYDLDGIQNEVTLKNVCYAPKFKRNLISESKC 412          
BLAST of mRNA_P-littoralis_Contig730.36.1 vs. uniprot
Match: A0A2G8S714_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8S714_9APHY)

HSP 1 Score: 55.1 bits (131), Expect = 1.040e-5
Identity = 41/148 (27.70%), Postives = 65/148 (43.92%), Query Frame = 1
Query:   79 MCYNCRGIGHFARDCTVKIC-KRCQGRGHDEDKCGSPADMRTNLAVELPDCDSG----SAVGLEPWHV----DSGASGTVTRSSRMMTNFRPCN--KLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQ 489
            +CYNCRG+GH AR+C  K   K  Q      D   +PA    N A E      G    SA+   P       DSGAS  ++        FR  N  + +   +       G GD+ + + +   + L+ +++  Y P+ A+ L+S+ +
Sbjct:  558 ICYNCRGVGHIARNCRQKGGGKEGQWPKPKTDDAANPAKADANAATEKGFLALGNVVTSALAAVPGTYIDVFDSGASVHISPYRECFVKFRELNPARAITAANGEQFFATGEGDVEIRVPNGPSTQLLTLRDVLYSPSVAFALVSIKR 705          
BLAST of mRNA_P-littoralis_Contig730.36.1 vs. uniprot
Match: A0A0D3E542_BRAOL (CCHC-type domain-containing protein n=2 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=A0A0D3E542_BRAOL)

HSP 1 Score: 54.3 bits (129), Expect = 1.580e-5
Identity = 47/161 (29.19%), Postives = 74/161 (45.96%), Query Frame = 1
Query:   31 DGKDGAEDDKPSAKGPMCYNCRGIGHFARDCTVKI--CKRCQGRGHDEDK-CGSPADMRTNLAVELPDCDSGSAVGLE-PWHVDSGASGTVTRSSRMMTNFRPCN--KLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQCV 495
            DG +G+  DK + K   CY C  +GHF RDC VK+      + + H ED+ CG          VE     + +   L   W VDSG S  +T   ++ ++ +  +  + +   DN  H+I+    + +  K D    +  +KN  +VP    NLLS+   V
Sbjct:  256 DGSEGSSMDKKNFK---CYRCGKLGHFKRDCRVKLKETNMMESKSHTEDEECGKC------FTVEATHPGTPTTKNLRNDWIVDSGCSHHITGDEKLFSSLQRHDGKEAIITADNSIHRIEKEETVVI--KGDDEEPI-TLKNVYHVPGVKKNLLSVVNAV 404          
BLAST of mRNA_P-littoralis_Contig730.36.1 vs. uniprot
Match: A0A834R2W3_SARSC (Copia protein n=1 Tax=Sarcoptes scabiei TaxID=52283 RepID=A0A834R2W3_SARSC)

HSP 1 Score: 53.9 bits (128), Expect = 2.370e-5
Identity = 41/139 (29.50%), Postives = 62/139 (44.60%), Query Frame = 1
Query:   76 PMCYNCRGIGHFARDCTVKICKRCQGRGHDEDKCGSPADMRTNLAVELPDCDSGSAVGLEPWHVDSGASGTVTRSSRMMTNFRPC-NKLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQ 489
            P+C+NC+ IGH A+DC   +  R   + + +      +D   N+A          ++    W +DSGA    T + +++ N R   N  V  P      I   G   VDL++D     M+V    +VP F  N LS SQ
Sbjct:  206 PICFNCKEIGHLAKDCKSDLSYRILNKSNSQQY----SDRVVNIASN--------SILANRWILDSGADSHFTGNWKILRNIRQVRNVFVRVPLGPPRAITHEG--LVDLRNDHSCFTMSVY---FVPGFQSNCLSQSQ 327          
BLAST of mRNA_P-littoralis_Contig730.36.1 vs. uniprot
Match: A0A834RG90_SARSC (Uncharacterized protein n=1 Tax=Sarcoptes scabiei TaxID=52283 RepID=A0A834RG90_SARSC)

HSP 1 Score: 53.9 bits (128), Expect = 2.520e-5
Identity = 41/139 (29.50%), Postives = 62/139 (44.60%), Query Frame = 1
Query:   76 PMCYNCRGIGHFARDCTVKICKRCQGRGHDEDKCGSPADMRTNLAVELPDCDSGSAVGLEPWHVDSGASGTVTRSSRMMTNFRPC-NKLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAYVPTFAYNLLSMSQ 489
            P+C+NC+ IGH A+DC   +  R   + + +      +D   N+A          ++    W +DSGA    T + +++ N R   N  V  P      I   G   VDL++D     M+V    +VP F  N LS SQ
Sbjct:  206 PICFNCKEIGHLAKDCKSDLSYRILNKSNSQQY----SDRVVNIASN--------SILANRWILDSGADSHFTGNWKILRNIRQVRNVFVRVPLGPPRAITHEG--LVDLRNDHSCFTMSVY---FVPGFQSNCLSQSQ 327          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig730.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6D2KMT4_9BRAS3.880e-627.27Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A6D2KKQ4_9BRAS3.890e-627.27Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A6D2KB33_9BRAS4.060e-627.27Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A6D2JWG0_9BRAS4.130e-627.27Uncharacterized protein n=10 Tax=Coluteocarpeae Ta... [more]
A0A6D2KB39_9BRAS4.240e-627.27ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase n=... [more]
T1J0W8_STRMM9.820e-627.15Uncharacterized protein n=1 Tax=Strigamia maritima... [more]
A0A2G8S714_9APHY1.040e-527.70Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
A0A0D3E542_BRAOL1.580e-529.19CCHC-type domain-containing protein n=2 Tax=Brassi... [more]
A0A834R2W3_SARSC2.370e-529.50Copia protein n=1 Tax=Sarcoptes scabiei TaxID=5228... [more]
A0A834RG90_SARSC2.520e-529.50Uncharacterized protein n=1 Tax=Sarcoptes scabiei ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig730contigP-littoralis_Contig730:132671..133297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3712.Bo9g042290.1
PFAMsDUF4219,Retrotran_gag_2,zf-CCHC
Model size501
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.59e-06
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37UZ7@33090|Viridiplantae,3GIGD@35493|Streptophyta,3I1M2@3699|Brassicales
Descriptiongag-polypeptide of LTR copia-type
Cds size501
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791517.8711743-CDS-P-littoralis_Contig730:132670..1329311680791517.8711743-CDS-P-littoralis_Contig730:132670..132931Pylaiella littoralis U1_48CDSP-littoralis_Contig730 132671..132931 -
1680791517.8862472-CDS-P-littoralis_Contig730:133057..1332971680791517.8862472-CDS-P-littoralis_Contig730:133057..133297Pylaiella littoralis U1_48CDSP-littoralis_Contig730 133058..133297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig730.36.1prot_P-littoralis_Contig730.36.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig730 132671..133297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig730.36.1

>prot_P-littoralis_Contig730.36.1 ID=prot_P-littoralis_Contig730.36.1|Name=mRNA_P-littoralis_Contig730.36.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=167bp
RGNNRKKKSSDGKDGAEDDKPSAKGPMCYNCRGIGHFARDCTVKICKRCQ
GRGHDEDKCGSPADMRTNLAVELPDCDSGSAVGLEPWHVDSGASGTVTRS
SRMMTNFRPCNKLVAGPDNVTHQIKGRGDIAVDLKSDVGSMLMAVKNAAY
VPTFAYNLLSMSQCVRQ
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mRNA from alignment at P-littoralis_Contig730:132671..133297-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig730.36.1 ID=mRNA_P-littoralis_Contig730.36.1|Name=mRNA_P-littoralis_Contig730.36.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=627bp|location=Sequence derived from alignment at P-littoralis_Contig730:132671..133297- (Pylaiella littoralis U1_48)
CGAGGCAACAACAGGAAGAAGAAGTCCAGCGACGGAAAAGACGGCGCTGA GGACGACAAGCCATCGGCCAAGGGGCCGATGTGTTACAACTGCCGTGGCA TAGGCCATTTCGCCCGCGACTGCACTGTGAAGATCTGCAAGCGATGCCAA GGAAGAGGGCACGACGAAGACAAGTGCGGGTCTCCGGCTGATATGCGGAC AAACCTGGCGGTGGAGCTGCCGGACTGCGACTCTGGATCGGTGACTTCGA GCGTAGAGGCCGCAGGGTTCATAGCAAAGGAGCTGGACCTAGCCGGGTGT GTGCATCTACAAGGCAAGTGCGATGATGGTGGTCCAATCGGTGGTGTAGG GGATTTCGCACTGCAGGCTGTTGGTTTAGAACCCTGGCACGTTGACTCCG GGGCTTCAGGCACCGTGACGCGTAGCTCCAGGATGATGACCAACTTCCGA CCGTGCAACAAGCTAGTTGCAGGTCCAGACAATGTCACTCACCAGATTAA AGGCAGAGGTGACATAGCCGTCGACCTCAAGTCTGATGTGGGGTCAATGC TTATGGCTGTCAAAAACGCAGCCTACGTGCCCACGTTTGCCTACAATCTG CTCTCCATGTCCCAGTGCGTGCGACAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig730:132671..133297-

>mRNA_P-littoralis_Contig730.36.1 ID=mRNA_P-littoralis_Contig730.36.1|Name=mRNA_P-littoralis_Contig730.36.1|organism=Pylaiella littoralis U1_48|type=CDS|length=501bp|location=Sequence derived from alignment at P-littoralis_Contig730:132671..133297- (Pylaiella littoralis U1_48)
CGAGGCAACAACAGGAAGAAGAAGTCCAGCGACGGAAAAGACGGCGCTGA
GGACGACAAGCCATCGGCCAAGGGGCCGATGTGTTACAACTGCCGTGGCA
TAGGCCATTTCGCCCGCGACTGCACTGTGAAGATCTGCAAGCGATGCCAA
GGAAGAGGGCACGACGAAGACAAGTGCGGGTCTCCGGCTGATATGCGGAC
AAACCTGGCGGTGGAGCTGCCGGACTGCGACTCTGGATCGGCTGTTGGTT
TAGAACCCTGGCACGTTGACTCCGGGGCTTCAGGCACCGTGACGCGTAGC
TCCAGGATGATGACCAACTTCCGACCGTGCAACAAGCTAGTTGCAGGTCC
AGACAATGTCACTCACCAGATTAAAGGCAGAGGTGACATAGCCGTCGACC
TCAAGTCTGATGTGGGGTCAATGCTTATGGCTGTCAAAAACGCAGCCTAC
GTGCCCACGTTTGCCTACAATCTGCTCTCCATGTCCCAGTGCGTGCGACA
A
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