mRNA_P-littoralis_Contig1184.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1184.3.1
Unique NamemRNA_P-littoralis_Contig1184.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1184.3.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 234 bits (598), Expect = 2.570e-69
Identity = 128/273 (46.89%), Postives = 159/273 (58.24%), Query Frame = 2
Query:    5 KVRPRIIYKGSPFVG-GTKKSGAPKKPGKNSISYEHLPEKRTSFDYPAGGISLGVQKSSWCDGVQSDEWVTQDFMRRP--GSTPRDQRPSVLVLDDFRCHWDEKFQQKLKDLANTLVVMLGGGLTPVCQPLDRNTNKEFKRGFRARYTIWIRDNFGRSRE-KVSAPSRGLVATWVKEVWEGISERTIRSCFKVCGLTLNLDGSEDHAWCTSTFGANYREVFGEQREEWEQAH-GIDLEPLQLPVIPTGDGVKDTVAEAAAALAAFLTHQDDSD 808
            KV  RII+KG+PFV   T   G   +P KNSI++E LP  R+    P GG+S GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH D+ F   LK  ANT+V+ + GGLTP+ QPLDR  NK+ KR  R  YT          +  K++ P RG VATW K  W  I+  T+++CFK+CGLTL LDGSEDHAWC   FG  YRE+  +QR EW   H  + L PLQLP +P         A A    A  L   DDSD
Sbjct:  280 KVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAHTAKAARDPKTGKLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPPLQLPKVPAESTANHIEAAAKELEAGLLPRGDDSD 551          
BLAST of mRNA_P-littoralis_Contig1184.3.1 vs. uniprot
Match: A0A6H5KRZ1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ1_9PHAE)

HSP 1 Score: 233 bits (595), Expect = 8.280e-69
Identity = 128/274 (46.72%), Postives = 159/274 (58.03%), Query Frame = 2
Query:    2 QKVRPRIIYKGSPFVG-GTKKSGAPKKPGKNSISYEHLPEKRTSFDYPAGGISLGVQKSSWCDGVQSDEWVTQDFMRRP--GSTPRDQRPSVLVLDDFRCHWDEKFQQKLKDLANTLVVMLGGGLTPVCQPLDRNTNKEFKRGFRARYTIWIRDNFGRSRE-KVSAPSRGLVATWVKEVWEGISERTIRSCFKVCGLTLNLDGSEDHAWCTSTFGANYREVFGEQREEWEQAH-GIDLEPLQLPVIPTGDGVKDTVAEAAAALAAFLTHQDDSD 808
            +KV  RII+KG+PFV   T   G   +P KNSI++E LP  R+    P GG+S GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH D+ F   LK  ANT+V+ + GGLTP+ QPLDR  NK+ KR  R  YT          +  K++ P RG VATW K  W  I+  T ++CFK+CGLTL LDGSEDHAWC   FG  YRE+  +QR EW   H  + L PLQLP +P         A A    A  L   DDSD
Sbjct:  286 KKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAHTAKAARDPKTGKLAPPGRGAVATWCKNAWASITPETAKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPPLQLPKVPAESTANHIEAAAKELEAGLLPRGDDSD 558          
BLAST of mRNA_P-littoralis_Contig1184.3.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 2.570e-68
Identity = 126/282 (44.68%), Postives = 170/282 (60.28%), Query Frame = 2
Query:    2 QKVRPRIIYKGSPF----VGGTKKSGAPKKPGKNSISYEHLPEKRTSFDYPAGGISLGVQKSSWCDGVQSDEWVTQDFMRRP--GSTPRDQRPSVLVLDDFRCHWDEKFQQKLKDLANTLVVMLGGGLTPVCQPLDRNTNKEFKRGFRARYTIWIRDNFGRSRE-KVSAPSRGLVATWVKEVWEGISERTIRSCFKVCGLTLNLDGSEDHAWCTSTFGANYREVFGEQREEWEQAHG-IDLEPLQLPVIPTG-DGVKDTVA--EAAAALAAFLTHQDDSDEE 814
            +KV PRII+KG+PF    V G  KS  P+K   NS+++E  P  R    +PA G+S GVQ+ SW D  + + W++  +  RP  GS  + QRP +LVLDDF+CH DE F   LK  ANT+V+ + G LTP+ QPLDR  NK+ KR  R +YT +       +R  K+  P RG+V+TW KE WE  +  T+++CF +CGLTL LDGSEDHAWC   FG +YR++  EQR  W   H  + L PL+LP +P G D    T A  E    L  ++  + DS+ E
Sbjct:  166 KKVSPRIIFKGTPFTPPTVSGKGKSTLPRK---NSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQ-QRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAYSASAVADARSGKLKPPERGVVSTWCKEAWESSTPETVKTCFMICGLTLALDGSEDHAWCEHNFGEDYRDLLEEQRAVWLAEHADVTLPPLKLPKVPGGFDSNPITAAQKEVEGKLLPYVADESDSEVE 443          
BLAST of mRNA_P-littoralis_Contig1184.3.1 vs. uniprot
Match: A0A6H5J8R4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8R4_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 3.440e-68
Identity = 118/252 (46.83%), Postives = 158/252 (62.70%), Query Frame = 2
Query:    2 QKVRPRIIYKGSPF----VGGTKKSGAPKKPGKNSISYEHLPEKRTSFDYPAGGISLGVQKSSWCDGVQSDEWVTQDFMRRP--GSTPRDQRPSVLVLDDFRCHWDEKFQQKLKDLANTLVVMLGGGLTPVCQPLDRNTNKEFKRGFRARYTIWIRDNFGRSRE-KVSAPSRGLVATWVKEVWEGISERTIRSCFKVCGLTLNLDGSEDHAWCTSTFGANYREVFGEQREEWEQAH-GIDLEPLQLPVIPTG 733
            +KV PRII+KG+PF    V G  KS  P+K   NS+++E  P  R    +PA G+S GVQ+ SW D  + + W +  +  RP  GS  + QRP +LVLDDF+CH DE F   LK  ANT+V+ + GGLTP+ QPLD   NK+ KR  R ++T +       +R  K+  P RG+V+TW KE WE I+  T+++CFK+CGLTL LDGSEDHAWC   FG +YR++  EQ   W   H  + L PL+LP +P G
Sbjct:   11 KKVSPRIIFKGTPFTSPTVSGNGKSTLPRK---NSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQ-QRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLD--LNKQMKRLLRGKHTAYSSSAVADARSGKLKPPERGIVSTWCKEEWESITPETVKTCFKICGLTLALDGSEDHAWCAHNFGEDYRDLLEEQHAVWLAEHPNVTLPPLKLPKVPGG 256          
BLAST of mRNA_P-littoralis_Contig1184.3.1 vs. uniprot
Match: A0A6H5KQK9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQK9_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 1.830e-67
Identity = 123/279 (44.09%), Postives = 165/279 (59.14%), Query Frame = 2
Query:    2 QKVRPRIIYKGSPFVGGTKKS-GAPKKPGKNSISYEHLPEKRTSFDYPAGGISLGVQKSSWCDGVQSDEWVTQDFMRRP--GSTPRDQRPSVLVLDDFRCHWDEKFQQKLKDLANTLVVMLGGGLTPVCQPLDRNTNKEFKRGFRARYTIWIRDNFGRSRE-KVSAPSRGLVATWVKEVWEGISERTIRSCFKVCGLTLNLDGSEDHAWCTSTFGANYREVFGEQREEWEQAH-GIDLEPLQLPVIPTG-DGVKDTVA--EAAAALAAFLTHQDDSDEE 814
            QKV PRII KG+PF+  T    G    P KN +++E+ P  R    +PA G+S GVQ+ SW D  + + W++  +  RP  GS  + QRP +LVLDD +CH  E F   LK  ANT+V+ + GGLTP+ QPLDR  NK+ KR  R +YT +       +R  K+  P RG+V+TW KE WE I+  T++SCFK+CGLTL LDGSEDHAWC   FG +  ++  EQ   W   H  + L PL+LP +P G D    T A  E    L  ++  + DS+ E
Sbjct:   47 QKVLPRIIVKGTPFIPPTVSGKGKSTLPRKNYVAWENHPANRAEHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQ-QRPCILVLDDVKCHKYEGFIAALKRDANTMVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSTSAVADARSGKLKPPERGVVSTWCKEAWESITPETVKSCFKICGLTLALDGSEDHAWCDHDFGEDSHDLLEEQHAVWLAEHPDVTLPPLKLPKVPGGFDSNPITAAQKEVEGKLLPYVADESDSEVE 324          
BLAST of mRNA_P-littoralis_Contig1184.3.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 1.950e-66
Identity = 113/246 (45.93%), Postives = 152/246 (61.79%), Query Frame = 2
Query:    2 QKVRPRIIYKGSPFVGGTKKS-GAPKKPGKNSISYEHLPEKRTSFDYPAGGISLGVQKSSWCDGVQSDEWVTQDFMRRP--GSTPRDQRPSVLVLDDFRCHWDEKFQQKLKDLANTLVVMLGGGLTPVCQPLDRNTNKEFKRGFRARYTIWIRDNFGRSREKVSAPSRGLVATWVKEVWEGISERTIRSCFKVCGLTLNLDGSEDHAWCTSTFGANYREVFGEQREEWEQAH-GIDLEPLQLPVIP 727
            +KV  RII+ G+PF+  T    G    P KNS+++E  P  R    +PA G+S GVQ+ SW D  + + W +  +  RP  GS  + QRP +LVLDDF+CH DE F   LK  ANT+V+ + GGLTP+ QPLDR  NK+ KR  R++YT +          K+  P RG+V+TW K  WE I+  T+++CFK+CGLTL LDGSEDHAWC   FG +YR++  EQ   W   H  + L PL+LP +P
Sbjct:  100 KKVSLRIIFMGTPFIPPTVSGKGKSTLPRKNSVAWEMHPTNRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQ-QRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKYTAYSASATDARSGKLKPPERGVVSTWCKGAWESITPETVKTCFKICGLTLALDGSEDHAWCAHNFGEDYRDLLEEQHAVWLAEHPNVTLPPLKLPKVP 344          
BLAST of mRNA_P-littoralis_Contig1184.3.1 vs. uniprot
Match: A0A6H5L4U1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4U1_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 4.790e-66
Identity = 112/247 (45.34%), Postives = 153/247 (61.94%), Query Frame = 2
Query:    2 QKVRPRIIYKGSPFVGGTKKS-GAPKKPGKNSISYEHLPEKRTSFDYPAGGISLGVQKSSWCDGVQSDEWVTQDFMRRP--GSTPRDQRPSVLVLDDFRCHWDEKFQQKLKDLANTLVVMLGGGLTPVCQPLDRNTNKEFKRGFRARYTIWIRDNFGRSRE-KVSAPSRGLVATWVKEVWEGISERTIRSCFKVCGLTLNLDGSEDHAWCTSTFGANYREVFGEQREEWEQAH-GIDLEPLQLPVIP 727
            +KV PRII+KG+PF+  T    G    P KNS+++E  P  R    +PA G+S GVQ  SW D  + + W++  +  RP  GS  + QRP +LVLDDF+CH DE F   LK  ANT+++ + GG+T + QPLDR  NK+ KR  R +YT +       +R  K+  P RG+V+TW KE WE I+  T+++CF +C LTL LDGSEDHAWC   FG +YR++ GEQ       H  + L PL+LP +P
Sbjct:   27 KKVSPRIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEIHPANRAKHAHPANGMSFGVQGKSWSDQRECNGWISGSWKLRPNNGSIVQ-QRPCILVLDDFKCHKDEGFIAALKRDANTIIIFIPGGMTLLLQPLDRLLNKQMKRLLRGKYTAYSASAVADARSGKLKPPERGVVSTWCKEAWESITPETVKTCFMICRLTLALDGSEDHAWCEHNFGEDYRDLLGEQHAVRLAEHPDVTLPPLKLPKVP 272          
BLAST of mRNA_P-littoralis_Contig1184.3.1 vs. uniprot
Match: A0A6H5KEE8_9PHAE (DDE-1 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE8_9PHAE)

HSP 1 Score: 221 bits (562), Expect = 6.520e-64
Identity = 123/274 (44.89%), Postives = 155/274 (56.57%), Query Frame = 2
Query:    2 QKVRPRIIYKGSPFVG-GTKKSGAPKKPGKNSISYEHLPEKRTSFDYPAGGISLGVQKSSWCDGVQSDEWVTQDFMRRP--GSTPRDQRPSVLVLDDFRCHWDEKFQQKLKDLANTLVVMLGGGLTPVCQPLDRNTNKEFKRGFRARYTIWIRDNFGRSRE-KVSAPSRGLVATWVKEVWEGISERTIRSCFKVCGLTLNLDGSEDHAWCTSTFGANYREVFGEQREEWEQAH-GIDLEPLQLPVIPTGDGVKDTVAEAAAALAAFLTHQDDSD 808
            +KV  RII+KG+PFV   T   G   +P KNSI++E LP  R+    P  G+S GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH D+ F   LK  ANT+V+ + GGLTP+ Q LDR  NK+ KR                 +  K++ P RG VATW K  W  I+  T+++CFK+CGLTL LDGSEDHAWC   FG  YRE+  +QR EW   H  + L PLQLP +P         A A    A  L   DDSD
Sbjct:  291 KKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVEGMSFGVQEKSWCDLRECKLWIKGSWKLRPNNGSIVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQLLDRMLNKQMKRLLXXXXXXXXXXXXXXPKTGKLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPPLQLPKVPAESTANHIEAAAKELEAELLPRGDDSD 563          
BLAST of mRNA_P-littoralis_Contig1184.3.1 vs. uniprot
Match: A0A6H5JQM5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM5_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 8.570e-63
Identity = 122/274 (44.53%), Postives = 157/274 (57.30%), Query Frame = 2
Query:    5 KVRPRIIYKGSPFVG-GTKKSGAPKKPGKNSISYEHLPEKRTSFDYPAGGISLGVQKSSWCDGVQSDEWVTQDFMRRP--GSTPRDQRPSVLVLDDFRCHWDEKFQQKLKDLANTLVVMLGGGLTPVCQPLDRNTNKEFKRGFRARYTIWIRDNFGRSRE-KVSAPSRGLVATWVKEVWEGISERTIRSCFKVCGLTLNLDGSEDHAWCTSTFGANYREVFGEQREEW-EQAHGIDLEPLQLPVIPTGDGVKDTVAEAAAALAAFLTHQDDSDE 811
            KV  RII+KG PF+   T + G   +P K SI+ E LP  +T+F YP  G+S GVQ+ SW D  +   W+++ +  RP  GS  + QR S+LVLDDFR               NT V+++ GGLTP+ QPLDR  +KE KR  R RYT ++       +  K+  P RGLV+TW KE W  I+  T++ CFKVCGLTL LDGSED AWCT  FG  YREV  +QR EW  Q  G+ L PLQLP + +  G            A  L  + DSD+
Sbjct:  340 KVPLRIIFKGKPFIPPSTARRGKNTQPRKGSIAAEVLPANQTNFGYPVSGMSFGVQERSWYDACECTLWLSESWGFRPNHGSVIK-QRHSILVLDDFR--------------TNTTVILIPGGLTPLLQPLDRMLDKEMKRLMRRRYTQYMASAIADPKTGKLQPPGRGLVSTWCKESWAAITAETVKMCFKVCGLTLALDGSEDDAWCTHNFGEGYREVLVQQRAEWGAQRPGVTLPPLQLPEVSSASGANPIATAEKEVTAKLLPPEGDSDD 598          
BLAST of mRNA_P-littoralis_Contig1184.3.1 vs. uniprot
Match: A0A6H5KT06_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT06_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 1.570e-62
Identity = 108/232 (46.55%), Postives = 145/232 (62.50%), Query Frame = 2
Query:    2 QKVRPRIIYKGSPF----VGGTKKSGAPKKPGKNSISYEHLPEKRTSFDYPAGGISLGVQKSSWCDGVQSDEWVTQDFMRRP--GSTPRDQRPSVLVLDDFRCHWDEKFQQKLKDLANTLVVMLGGGLTPVCQPLDRNTNKEFKRGFRARYTIWIRDNFGRSRE-KVSAPSRGLVATWVKEVWEGISERTIRSCFKVCGLTLNLDGSEDHAWCTSTFGANYREVFGEQREEW 676
            +KV PRI +KG+PF    V G  KS  P+K   NS+++E  P  R    +PA G+S GVQ+ SW D  + + W++  +  RP  GS  + QRP +LVLDDF+ H DE F   LK  ANT+V+ + GGLTP+ QPLD   NK+ KR  R +Y  +       +R  K+  P RG+V+TW KE WE I+  T+++CFK+CGLTL LDGSEDHAWC    G +YR++F EQ   W
Sbjct:   47 KKVSPRITFKGTPFTPPTVSGKGKSTLPRK---NSVAWEIHPANRAKHGHPANGVSFGVQEKSWSDQRECNGWISGRWKLRPNNGSIVQ-QRPCILVLDDFKRHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDCMLNKQMKRLLRGKYIAYSASAVADARSGKLKPPERGVVSTWCKEAWESITPETVKTCFKICGLTLALDGSEDHAWCEHNVGEDYRDLFEEQHAVW 274          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1184.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KE45_9PHAE2.570e-6946.89DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ1_9PHAE8.280e-6946.72DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE2.570e-6844.68DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5J8R4_9PHAE3.440e-6846.83DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KQK9_9PHAE1.830e-6744.09DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KII4_9PHAE1.950e-6645.93DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L4U1_9PHAE4.790e-6645.34DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KEE8_9PHAE6.520e-6444.89DDE-1 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5JQM5_9PHAE8.570e-6344.53DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KT06_9PHAE1.570e-6246.55DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1184contigP-littoralis_Contig1184:3882..4820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog588596.U9SSE3
Preferred namePOGK
PFAMsBrkDBD,DDE_1,HTH_Tnp_Tc5,KRAB
Model size939
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.71e-18
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota,38I47@33154|Opisthokonta
DescriptionDNA binding
Cds size672
COG categoryBD
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789497.3626704-UTR-P-littoralis_Contig1184:3881..41041680789497.3626704-UTR-P-littoralis_Contig1184:3881..4104Pylaiella littoralis U1_48UTRP-littoralis_Contig1184 3882..4104 +
1680789497.3841157-UTR-P-littoralis_Contig1184:4776..48201680789497.3841157-UTR-P-littoralis_Contig1184:4776..4820Pylaiella littoralis U1_48UTRP-littoralis_Contig1184 4777..4820 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789497.3758092-CDS-P-littoralis_Contig1184:4104..47761680789497.3758092-CDS-P-littoralis_Contig1184:4104..4776Pylaiella littoralis U1_48CDSP-littoralis_Contig1184 4105..4776 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1184.3.1prot_P-littoralis_Contig1184.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1184 4105..4776 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1184.3.1

>prot_P-littoralis_Contig1184.3.1 ID=prot_P-littoralis_Contig1184.3.1|Name=mRNA_P-littoralis_Contig1184.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=224bp
MRRPGSTPRDQRPSVLVLDDFRCHWDEKFQQKLKDLANTLVVMLGGGLTP
VCQPLDRNTNKEFKRGFRARYTIWIRDNFGRSREKVSAPSRGLVATWVKE
VWEGISERTIRSCFKVCGLTLNLDGSEDHAWCTSTFGANYREVFGEQREE
WEQAHGIDLEPLQLPVIPTGDGVKDTVAEAAAALAAFLTHQDDSDEEGHE
EDGTEDVIDLADEESEGSEDDEL*
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mRNA from alignment at P-littoralis_Contig1184:3882..4820+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1184.3.1 ID=mRNA_P-littoralis_Contig1184.3.1|Name=mRNA_P-littoralis_Contig1184.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=939bp|location=Sequence derived from alignment at P-littoralis_Contig1184:3882..4820+ (Pylaiella littoralis U1_48)
ACAGAAGGTGCGGCCGCGCATCATCTACAAGGGGAGCCCTTTCGTCGGGG GTACCAAGAAGTCGGGCGCGCCCAAGAAGCCTGGAAAGAACAGCATCTCG TATGAGCACCTCCCGGAGAAGCGGACGAGCTTCGACTACCCGGCGGGCGG CATCAGCCTCGGGGTGCAGAAGTCGTCGTGGTGCGACGGCGTTCAGTCCG ATGAATGGGTCACTCAGGACTTCATGCGCCGCCCAGGGTCTACCCCAAGG GATCAGCGTCCCAGCGTTCTCGTGCTCGACGACTTCAGGTGCCACTGGGA TGAGAAGTTCCAGCAGAAGCTCAAGGATCTGGCGAACACGCTGGTGGTGA TGCTTGGTGGAGGGCTGACCCCGGTGTGCCAGCCGCTCGACCGGAATACC AACAAGGAGTTCAAGCGAGGCTTTCGGGCCAGGTACACCATCTGGATCCG GGACAACTTCGGGCGCTCGAGGGAGAAGGTGTCCGCGCCGAGCAGGGGGC TGGTCGCGACGTGGGTGAAGGAGGTGTGGGAAGGCATCTCGGAGCGGACC ATTCGCTCGTGCTTTAAGGTCTGCGGTCTCACCCTCAACCTCGACGGCAG CGAGGATCACGCGTGGTGCACCTCCACGTTTGGCGCCAACTACCGCGAGG TTTTTGGCGAGCAGCGCGAGGAGTGGGAGCAAGCGCACGGCATCGACCTC GAACCGCTGCAGCTACCGGTCATCCCCACCGGAGACGGCGTCAAGGACAC GGTGGCGGAGGCGGCGGCAGCGCTGGCAGCCTTTCTAACGCACCAGGACG ACTCGGACGAGGAGGGCCACGAGGAGGATGGCACTGAAGACGTCATTGAC TTGGCGGACGAGGAATCAGAGGGTTCAGAGGATGATGAGCTGTAGTTTGG GGTAGATGGAGGCTAGGTGGGGGCAAGCATGCCGAGGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1184:3882..4820+

>mRNA_P-littoralis_Contig1184.3.1 ID=mRNA_P-littoralis_Contig1184.3.1|Name=mRNA_P-littoralis_Contig1184.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=672bp|location=Sequence derived from alignment at P-littoralis_Contig1184:3882..4820+ (Pylaiella littoralis U1_48)
ATGCGCCGCCCAGGGTCTACCCCAAGGGATCAGCGTCCCAGCGTTCTCGT
GCTCGACGACTTCAGGTGCCACTGGGATGAGAAGTTCCAGCAGAAGCTCA
AGGATCTGGCGAACACGCTGGTGGTGATGCTTGGTGGAGGGCTGACCCCG
GTGTGCCAGCCGCTCGACCGGAATACCAACAAGGAGTTCAAGCGAGGCTT
TCGGGCCAGGTACACCATCTGGATCCGGGACAACTTCGGGCGCTCGAGGG
AGAAGGTGTCCGCGCCGAGCAGGGGGCTGGTCGCGACGTGGGTGAAGGAG
GTGTGGGAAGGCATCTCGGAGCGGACCATTCGCTCGTGCTTTAAGGTCTG
CGGTCTCACCCTCAACCTCGACGGCAGCGAGGATCACGCGTGGTGCACCT
CCACGTTTGGCGCCAACTACCGCGAGGTTTTTGGCGAGCAGCGCGAGGAG
TGGGAGCAAGCGCACGGCATCGACCTCGAACCGCTGCAGCTACCGGTCAT
CCCCACCGGAGACGGCGTCAAGGACACGGTGGCGGAGGCGGCGGCAGCGC
TGGCAGCCTTTCTAACGCACCAGGACGACTCGGACGAGGAGGGCCACGAG
GAGGATGGCACTGAAGACGTCATTGACTTGGCGGACGAGGAATCAGAGGG
TTCAGAGGATGATGAGCTGTAG
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