mRNA_P-littoralis_Contig73.82.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig73.82.1
Unique NamemRNA_P-littoralis_Contig73.82.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig73.82.1 vs. uniprot
Match: A0A6H5KTX5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTX5_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 4.620e-67
Identity = 181/425 (42.59%), Postives = 211/425 (49.65%), Query Frame = 1 
Query:    1 SNNRVQLFDASSRKLLKVVGRRGQIRPGRMQGPEGVAFVDGRREMIVADTGNNRLQVFHIEELTMPPDDPCARPPRTRRSSGSASNDSRCR-------DLSSSSSEHSTA------------------------------------AGAGLDEDRGDESSRACLLVFAGGGEHFVGAINRRAAGESETAEGPLSQPCDVAYWRARRR-----PQRRELTEEDD-------------TAVWAWTAALPPWFRPHVGSGXXXXXXXXXXXXXXXXXXXXXXENVVRRELLSPSFPPWNSSISV-------PSREGNKK---RSGGLRSNESTRQAAAPGIYGGVVGSGEPPVGAFVVRETGYRGKLQLLYVAKTKETEEAEQAAAHENE--DAENASVSALSGDGSEE---EGSSRGGSDWMKQAAR 1047
            SNNRVQLFDA++ K L  VG RGQIRPGRMQGPEGVAFVDGRREMIVADTGNNRLQ+FH+EEL  PPDDP  +P  T  SS S+S               +SSSSE  ++                                     G G D+  GD+   ACLLVFAG  E   G   RR AGESE AEGPLSQPCDVAYWR RR      P++    +                 AVWAW    P WF P+                          E   RRELL P+ PP  +           P R   KK   R    +    T Q+    I GG  G+ EP +GAFVV  TG  GKLQL ++AKTKE EEAE AAA  +E  ++E+ SVS+ SG  S E   E  S  G DWM++  R
Sbjct:    3 SNNRVQLFDATTSKFLASVGTRGQIRPGRMQGPEGVAFVDGRREMIVADTGNNRLQIFHVEELEAPPDDPGIQPDVTSFSSSSSSVSGIASMDTVDSWQTTSSSSEMPSSWERSKAPPKPPPEQDKENRPNKSGRGAGELQREAANFGQGPDDAEGDDG--ACLLVFAGE-EDAGGLRQRRVAGESEDAEGPLSQPCDVAYWRPRRTAAGEFPEKGARKKXXXXXXXXXXXXXXXXNAVWAWNPEPPRWFWPN-----------------------PEDEERARRELLLPASPPRTNPAPTSKPPAGFPPRGHTKKPIDRRSTSKDEGRTVQSRVGSIKGG--GTEEPTLGAFVVCATGVAGKLQLSFIAKTKEAEEAEDAAAKGSEIAESEDESVSSFSGRRSTEGRGEDDSSEGFDWMRRVCR 399
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig73.82.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KTX5_9PHAE4.620e-6742.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig73contigP-littoralis_Contig73:445647..447878 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1047
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionSix-bladed beta-propeller, TolB-like
Ec32 orthologEc-22_000680.1
Cds size1047
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791514.9863367-CDS-P-littoralis_Contig73:445646..4457781680791514.9863367-CDS-P-littoralis_Contig73:445646..445778Pylaiella littoralis U1_48CDSP-littoralis_Contig73 445647..445778 +
1680791515.003811-CDS-P-littoralis_Contig73:446470..4466321680791515.003811-CDS-P-littoralis_Contig73:446470..446632Pylaiella littoralis U1_48CDSP-littoralis_Contig73 446471..446632 +
1680791515.0150504-CDS-P-littoralis_Contig73:446824..4474361680791515.0150504-CDS-P-littoralis_Contig73:446824..447436Pylaiella littoralis U1_48CDSP-littoralis_Contig73 446825..447436 +
1680791515.0290608-CDS-P-littoralis_Contig73:447737..4478781680791515.0290608-CDS-P-littoralis_Contig73:447737..447878Pylaiella littoralis U1_48CDSP-littoralis_Contig73 447738..447878 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig73.82.1prot_P-littoralis_Contig73.82.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig73 445647..447878 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig73.82.1

>prot_P-littoralis_Contig73.82.1 ID=prot_P-littoralis_Contig73.82.1|Name=mRNA_P-littoralis_Contig73.82.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=349bp
SNNRVQLFDASSRKLLKVVGRRGQIRPGRMQGPEGVAFVDGRREMIVADT
GNNRLQVFHIEELTMPPDDPCARPPRTRRSSGSASNDSRCRDLSSSSSEH
STAAGAGLDEDRGDESSRACLLVFAGGGEHFVGAINRRAAGESETAEGPL
SQPCDVAYWRARRRPQRRELTEEDDTAVWAWTAALPPWFRPHVGSGGGRT
SSSSSSTTTPSSFSATDDENVVRRELLSPSFPPWNSSISVPSREGNKKRS
GGLRSNESTRQAAAPGIYGGVVGSGEPPVGAFVVRETGYRGKLQLLYVAK
TKETEEAEQAAAHENEDAENASVSALSGDGSEEEGSSRGGSDWMKQAAR
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mRNA from alignment at P-littoralis_Contig73:445647..447878+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig73.82.1 ID=mRNA_P-littoralis_Contig73.82.1|Name=mRNA_P-littoralis_Contig73.82.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2232bp|location=Sequence derived from alignment at P-littoralis_Contig73:445647..447878+ (Pylaiella littoralis U1_48)
AGTAATAACCGTGTCCAGCTGTTCGACGCCAGCTCGAGAAAGCTCCTGAA
GGTTGTCGGCAGGAGGGGGCAGATCAGGCCCGGAAGGATGCAGGGGCCCG
AGGGTGTAGCGTTTGTGGACGGCCGGCGCGAGGTGGGATACAGTACACCA
GTATAAAAAAGACGGCTGCGTAAGACAACAGCCAGGCACAACCGCAGTAC
CTAGTTTAAGAATTTAGATCGAAACTGCGACATCGGAACACCTTAAACAT
TTACGGAGCAAACGTAATATGCCATACGGGCTCAAGTTTACAGTGTTCTC
TACCCATTCAAACTCCGGGACGAAGCGATCATTCTTCCCAGCGGAAATTG
CGGCATGTAGACACGATTTTCTGCGCGTGTTTCTTCGTCCTTTTGCCGAG
TGTCGTGCGGAACTTCCCGACTCACCCTCCCCCCCTCCCCCTCTTCTGCT
GATGTCCCCTTTCTACTGCGCGACACCTACTGGTAGTCTTAGTCCGCGAA
GATCGCGCTGCATACGATATGTGCACCAGAAACATTAATTCCGACAGATG
GTGGCGGTGACACAGAAGTTTCCCCATCACCTTCCTCACCTCAGTCGATG
GACAGTGATCAAGGTGTCCCTTCTCATTTTTTAGAGAATGTCCCCTACCT
TCAAGCCCGCTGGCTGGAACCCCCTCGCTGTCAAAACGATGAAGATTCAA
TGGTCGCAAACGGGGCGCCGTCATGAGTCAAAACACGTCGAAACCCGCTC
CACCACCCACCCACCTACTCAACTCTGTGATTCTCCTCGTGCTATTGTGC
TTCCGGGCGAATGTTTCGGTGCAGATGATTGTGGCTGACACGGGAAACAA
CAGGCTGCAGGTTTTCCACATCGAGGAGCTGACCATGCCTCCCGACGATC
CCTGCGCTCGCCCCCCGAGGACTCGAAGGAGCAGCGGGAGCGCAAGCAAC
GACAGCAGATGCAGAGATCTGTCCTCATCATCCTCCGTCGGGGACGCGTC
GCTGGACGGCACGATAAGCAGCCGGGGGGCAACGTCGACAAGCTCGGGAT
CCGTGTTGGCCTGGGCCCGGTCTCAGGCGCCGCCACCACCGACAAAAACA
ACAAACGCGTCTTCTCCTCCTCAGGCGGCGGCAGCAGGACGGACAGCTAA
TGGAAAGGGCCAGCCACGGCCACGGCAGGAACACTCTACTGCCGCGGGAG
CAGGGCTGGATGAGGACCGCGGTGACGAATCTTCTCGCGCCTGTTTGCTG
GTGTTCGCCGGGGGAGGAGAACATTTTGTCGGGGCGATAAATCGCCGCGC
GGCTGGCGAATCAGAGACCGCAGAGGGGCCTCTAAGCCAGCCGTGCGACG
TAGCGTACTGGAGAGCAAGAAGACGGCCACAACGACGAGAGCTGACAGAA
GAAGATGACACTGCCGTGTGGGCGTGGACTGCTGCACTGCCGCCATGGTT
CCGGCCTCACGTTGGAAGCGGCGGCGGCCGCACATCCTCCTCCTCCTCCT
CCACCACCACCCCATCATCATTCTCCGCCACGGATGACGAGAATGTCGTG
AGGAGGGAGCTTTTGTCGCCCAGCTTCCCACCCTGGAACAGCAGCATTTC
CGTGCCCTCGAGAGAAGGCAACAAGAAGCGGAGTGGCGGCTTGCGGTCGA
ACGAAAGCACAAGGCAGGCTGCCGCTCCAGGTATCTATGGTGGCGTAGTC
GGCAGCGGGGAACCGCCGGTTGGCGCCTTCGTGGTCCGCGAGACGGGCTA
TCGTGGGAAGCTTCAGCTTCTGTACGTCGCCAAAACCAAGGTACCGCGCA
GAGCAGAGCCGTTACAAGTCTGAGGAGAAAAGTGGTTCGACACTACGTAC
AGCAGTACTGTATGCATGACATCGGTTGTTGAAGCCCAAGGATCGGGTAG
CGTTGGACAGAGAGCCCTGCATGCCGTAAGCGTGCTGTCGCGCTCTGCTC
TCTGAATCTTGCCGGCCTGTGGCGATCGCTTTAATATATCGCCCGGGGGC
ATTAACCAATCATGGAACTGCGCTCGGCAATGATTGACGTGCTCGCGTCC
TGCCGGCCTGTGTTGTTTCCTGGTGCGTGGTCGCACACCAGGAAACCGAG
GAGGCCGAACAAGCTGCTGCACACGAGAACGAAGACGCGGAGAATGCCTC
CGTTTCGGCCCTGTCGGGGGACGGGTCTGAAGAAGAGGGAAGCTCGCGAG
GCGGCTCAGATTGGATGAAGCAAGCGGCAAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig73:445647..447878+

>mRNA_P-littoralis_Contig73.82.1 ID=mRNA_P-littoralis_Contig73.82.1|Name=mRNA_P-littoralis_Contig73.82.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1047bp|location=Sequence derived from alignment at P-littoralis_Contig73:445647..447878+ (Pylaiella littoralis U1_48)
AGTAATAACCGTGTCCAGCTGTTCGACGCCAGCTCGAGAAAGCTCCTGAA
GGTTGTCGGCAGGAGGGGGCAGATCAGGCCCGGAAGGATGCAGGGGCCCG
AGGGTGTAGCGTTTGTGGACGGCCGGCGCGAGATGATTGTGGCTGACACG
GGAAACAACAGGCTGCAGGTTTTCCACATCGAGGAGCTGACCATGCCTCC
CGACGATCCCTGCGCTCGCCCCCCGAGGACTCGAAGGAGCAGCGGGAGCG
CAAGCAACGACAGCAGATGCAGAGATCTGTCCTCATCATCCTCCGAACAC
TCTACTGCCGCGGGAGCAGGGCTGGATGAGGACCGCGGTGACGAATCTTC
TCGCGCCTGTTTGCTGGTGTTCGCCGGGGGAGGAGAACATTTTGTCGGGG
CGATAAATCGCCGCGCGGCTGGCGAATCAGAGACCGCAGAGGGGCCTCTA
AGCCAGCCGTGCGACGTAGCGTACTGGAGAGCAAGAAGACGGCCACAACG
ACGAGAGCTGACAGAAGAAGATGACACTGCCGTGTGGGCGTGGACTGCTG
CACTGCCGCCATGGTTCCGGCCTCACGTTGGAAGCGGCGGCGGCCGCACA
TCCTCCTCCTCCTCCTCCACCACCACCCCATCATCATTCTCCGCCACGGA
TGACGAGAATGTCGTGAGGAGGGAGCTTTTGTCGCCCAGCTTCCCACCCT
GGAACAGCAGCATTTCCGTGCCCTCGAGAGAAGGCAACAAGAAGCGGAGT
GGCGGCTTGCGGTCGAACGAAAGCACAAGGCAGGCTGCCGCTCCAGGTAT
CTATGGTGGCGTAGTCGGCAGCGGGGAACCGCCGGTTGGCGCCTTCGTGG
TCCGCGAGACGGGCTATCGTGGGAAGCTTCAGCTTCTGTACGTCGCCAAA
ACCAAGGAAACCGAGGAGGCCGAACAAGCTGCTGCACACGAGAACGAAGA
CGCGGAGAATGCCTCCGTTTCGGCCCTGTCGGGGGACGGGTCTGAAGAAG
AGGGAAGCTCGCGAGGCGGCTCAGATTGGATGAAGCAAGCGGCAAGG
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