mRNA_P-littoralis_Contig73.34.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig73.34.3
Unique NamemRNA_P-littoralis_Contig73.34.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig73.34.3 vs. uniprot
Match: A0A6H5KFE1_9PHAE (FAD_binding_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFE1_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 3.940e-56
Identity = 140/295 (47.46%), Postives = 170/295 (57.63%), Query Frame = 1 
Query:  346 VRDIVVVGAGVAGLASAACLARIGLRVTIAEIRGQDRWGHDREERGARVGVGGTAAGKRAKHKEPAALEK-NGVSNTRDDAIDPGVGIWTHGLACLDELGILQQLEAEGRYMGEAGYRSACGNWLATPSQPLGEYASRDE------AGANGGESRDGALFGGXXXXAGDNSASVLFVRESKLIEALQSALPDNTRFVQARVEDIARASGSGKGGGVCSG--RGTAAGRFCAAAAATTSIGPAGSRTGXXXXXXXXXXXXXXXXGGRWTQEFDLLVGADGPESFVRDMVMVMSSPG 1203
            + D+VVVGAGV GLA+AACLAR+GLRVT+A  +G               GVGG         K  AA E  +  S+    +IDPGVGIWTHGLACL+ LG+L+QLE+EGRYMGEAGYR   GNWLATP++PL E  +         +  +GG+S DG L G XXXX     ASVLFVRESKL+EAL+S LP  T+FV+  VEDI    G+       +G  RGT +GRFCAA A                              G W  +FDLLVGADG  SFVRD V++ +  G
Sbjct:   62 IGDVVVVGAGVGGLATAACLARLGLRVTVAAGKG---------------GVGGGRDIATTGEKTKAAAESMDRSSSATGGSIDPGVGIWTHGLACLESLGVLRQLESEGRYMGEAGYRDTAGNWLATPTRPLQERGAASMRRGQPCSDESGGKSEDGRLGGXXXXXXXXXXASVLFVRESKLMEALRSVLPAETKFVEGDVEDINWECGASNDDAGVAGKSRGTVSGRFCAAGAGD----------------------------GGWEADFDLLVGADGSHSFVRDRVILAADAG 313
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BLAST of mRNA_P-littoralis_Contig73.34.3 vs. uniprot
Match: D7G5G3_ECTSI (Monooxygenase FAD-binding n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G3_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 2.250e-25
Identity = 64/118 (54.24%), Postives = 80/118 (67.80%), Query Frame = 1 
Query:  565 SNTRDDAIDPGVGIWTHGLACLDELGILQQLEAEGRYMGEAGYRSACGNWLATPSQPLGEYAS----RDE--AGANGGESRDGALFGGXXXXAGDNSASVLFVRESKLIEALQSALPD 900
            S+    +IDPGVGIWTHGLACL+ LG+L+QLE+EGRYMGEAGYR   GNWLA P++PL E+ +    R E  +  +GG+  DG L G      G   ASVLFVRESKL+E   + + D
Sbjct:    5 SSATGGSIDPGVGIWTHGLACLESLGVLRQLESEGRYMGEAGYRDTTGNWLAIPTRPLQEWGAAPMRRGEHCSDESGGKGEDGRLGG----EGGGGGASVLFVRESKLMEMWFATVED 118
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig73.34.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KFE1_9PHAE3.940e-5647.46FAD_binding_3 domain-containing protein n=1 Tax=Ec... [more]
D7G5G3_ECTSI2.250e-2554.24Monooxygenase FAD-binding n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig73contigP-littoralis_Contig73:169460..174930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G5G3
PFAMsFAD_binding_3
Model size1326
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue3.7e-26
EggNOG OGs2E4W7@1|root,2SBR5@2759|Eukaryota
Cds size1323
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791512.248259-CDS-P-littoralis_Contig73:169460..1699071680791512.248259-CDS-P-littoralis_Contig73:169460..169907Pylaiella littoralis U1_48CDSP-littoralis_Contig73 169461..169907 -
1680791512.2636175-CDS-P-littoralis_Contig73:171420..1716251680791512.2636175-CDS-P-littoralis_Contig73:171420..171625Pylaiella littoralis U1_48CDSP-littoralis_Contig73 171421..171625 -
1680791512.273362-CDS-P-littoralis_Contig73:172233..1725221680791512.273362-CDS-P-littoralis_Contig73:172233..172522Pylaiella littoralis U1_48CDSP-littoralis_Contig73 172234..172522 -
1680791512.2840228-CDS-P-littoralis_Contig73:174548..1749301680791512.2840228-CDS-P-littoralis_Contig73:174548..174930Pylaiella littoralis U1_48CDSP-littoralis_Contig73 174549..174930 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig73.34.3prot_P-littoralis_Contig73.34.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig73 169461..174930 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig73.34.3

>prot_P-littoralis_Contig73.34.3 ID=prot_P-littoralis_Contig73.34.3|Name=mRNA_P-littoralis_Contig73.34.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=441bp
DGEPSWRRHRCVVWHPYLQAGAGQLTSCEAREVIMVTTTLVGGGLQRAMV
VCNSARRVVMLVPRARSTKGTNNGSNSGMTISSRLLLCPLSTATRPAAEA
SGDETKEGSEAVHRPVRDIVVVGAGVAGLASAACLARIGLRVTIAEIRGQ
DRWGHDREERGARVGVGGTAAGKRAKHKEPAALEKNGVSNTRDDAIDPGV
GIWTHGLACLDELGILQQLEAEGRYMGEAGYRSACGNWLATPSQPLGEYA
SRDEAGANGGESRDGALFGGGGGGAGDNSASVLFVRESKLIEALQSALPD
NTRFVQARVEDIARASGSGKGGGVCSGRGTAAGRFCAAAAATTSIGPAGS
RTGSSSSSSSGIDKGGDSGGGRWTQEFDLLVGADGPESFVRDMVMVMSSP
GPATPAAAGAGAEEGAGINRGGVSSAAARSEESGGGGAAVA
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mRNA from alignment at P-littoralis_Contig73:169460..174930-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig73.34.3 ID=mRNA_P-littoralis_Contig73.34.3|Name=mRNA_P-littoralis_Contig73.34.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=5471bp|location=Sequence derived from alignment at P-littoralis_Contig73:169460..174930- (Pylaiella littoralis U1_48)
GACGGTGAACCTTCCTGGCGCAGACACCGGTGTGTGGTATGGCATCCTTA
CCTACAAGCCGGGGCCGGTCAGCTCACATCGTGTGAAGCTCGAGAGGTCA
TCATGGTGACAACCACCTTAGTGGGGGGGGGCTTGCAACGAGCAATGGTT
GTTTGCAACAGCGCCAGAAGAGTTGTGATGCTGGTGCCAAGGGCACGAAG
CACCAAAGGCACCAACAACGGCAGCAACAGCGGGATGACCATCAGCAGTC
GATTGCTGCTGTGCCCGCTCTCAACAGCAACAAGACCAGCAGCGGAAGCG
TCAGGAGATGAAACTAAGGAAGGCTCTGAGGCGGTCCATCGGCCCGTCAG
AGATATAGTGGTAGTGGGAGCAGGCGTGGCAGGTAGGTGGGAATCGGCTG
CCATTTCGGAATACAGCAGTAGGGAAGCATGTCATTCTGGACGCCTACAG
TATACTCGTACCTTTCGGTCTCTATGGGCGAATCAGCCGAGGTCACGCAC
GGAGCAAGGTCAAGACAGGAGATTGCAACTGTACGTCAGTATAAATATTA
CTTCGAAGTACATTTAACTTCGAAGGTTTTACACATTAAGTATTGTACTG
CTGTAGTCACAAGGAGCAAGTATCGTACAACATCAGCTGTAAATTAGGTA
AAAGACTACCACGATTTTGTGTTGACTGCAATATTTCTGTTTGGATCCTT
GACCAAGAACAAACAATCACAGTTGTGAACACGACCGTGTACGAGAATGC
AGGGAGAAAACAAGCAGATAGCACCCGAACCAGGCAGGAGCCCCGACGCT
AGATTGGTCCGCAGCGAAAAGGATCCCGCGGTCTGTACCGGTAAAATTTC
GTGGACATGTTGTGCAGCAGTAGAAATACCATGAACGGAGTATTGCGAGG
CACATTACACATACTGGTACGCAGGTAACATTTCGTGAACATGTTGTGCA
GCAGTAGAAATACCATGAACGGAGTATTGCGAGGCACATCATACACACTG
GTATGCTGCAGTACCGGCACACTCATGAAACCTATTTTGAGCGGGACTTG
TAAAGCTTCTTGTCGCAGTTGATGTGAGCTGTAACTTTTATGTGACCATT
TCTTACGCCTGGCCAAGAGTATTGCACCAATTTCTTATTTTCTCAGGTTC
TTGTTTCCACCACACTCAGTGATATCCTTTTGTTTCTCACGCCGCTAGTC
ATTCCTTAATTTACTCTCAATTGCAGGGCCGTTCCCTTACCGACTGCGAT
TCTCTAGTCCGCGCATTTACTCTCAATTGTAGGGCCGTTCCCATACCGAC
TGTGATTCTATTGCCCGCACAAGGGACTCGACTTTCTCGTGTATCCGGTG
CTGGTTTGGTCTTCCGTCGTGAAAATGCTGCTTGACAGCAAGCGAGCCAA
GCGCTCGACGTGCGAGACCAAAGTACCCATCAACTACCTTGTTAGCCATT
ACGTGATTATCGGTGGACTCCCTGTGTGCGTGTGGTCGTTCAGGCTGGCA
TCACATCGACAACCTCTTTCGATTATCGATCGATGTATCTGAGAGCGGCG
GGTAGAGGTGCCACCTCGAGGCTGCTTCGGCCGGCAGTTCTAAAGTACAA
GTGCATCCGGCACACAACAGCAGCAGCAGCATCCATGCCCCAGCCTAGGG
GGATGCCGTCAACGTCAGTCAGTCTCGTACATGCTGTACTCCCTCCTTAA
TTTCGAGACTTTTTCGGGGACGAACAGGTGTCCCTGCTGCTGGTAGCTGT
AGAACTGCAGTACAGCATGCATGTACAGAGTACAGGATTGCGCGTGTAGG
TGACAAACGCAGCAGGCGATTTCTTATGCCCATGCTGAACCCCACAACTC
TCTCTTGCTCATCACTGGGGAGCATGATATTGAACGATTTTCTTACCCTC
CGTTTCTTTTCGTTCCCCTTCATTTGAGCCAAATTTCTATGGCTGAATTC
CTTATTATTTATAAATCCGAGGCTGGATTTCTTATGGAGGTATTTCTTAT
CAGTGGGGCGGTACCTGTAGTACCCTTGCAACACCGGCACTCTCCTTGCC
GTTGAGGTCGCGGGCACTAAACATCTGCCCAGAGGGGATACTCTCTCTTC
TCTTTCTCTCTCTCTCGATATACTTGACACACCCCGAGAGATGATACACC
AGGGAGATGAGAGAGAGATTGGTGTGTCAGGTACTTCGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGCGAAGAGAGAGTGAGATAAATAAAGTGGGA
GGGGCATAGTGTTGGCACACATCACGAAATCATTGCGCTTGTGTGTTTTA
GCAGCGAGTGAGCTGGGGCCGAAACGAGCCGCACGCACGCAACCATGGTT
ACTATCAGCGTGACGGAGGCGTTGTCACGCAACACGCAATGGCCGTATTT
TTGCACAGGCCTGGCTAGCGCTGCTTGCCTTGCCCGCATCGGGTTACGAG
TGACCATCGCTGAGATCCGGGGCCAGGACCGCTGGGGACACGACCGGGAA
GAACGTGGGGCAAGAGTGGGGGTAGGGGGGACGGCGGCGGGGAAAAGGGC
GAAACACAAGGAACCCGCCGCATTGGAAAAAAATGGGGTTTCCAACACCA
GAGACGATGCCATCGACCCGGGGGTGGGAATCTGGACGCACGGCTTGGCT
TGCCTCGACGAGCTTGGCATTCTCCAGCAGCTGGAGGCGGAAGGAAGGTG
GGACTGGCCGCGTTTTTCCTCATGTCGGGGCGCATCTTCTGCCCTGCTGC
CGCATGTTGCTGTTGGTGTTGATCATTGCAGCAGTGTGAATCCATGGCCA
ACATCCTGCCCGTAATACCATACCCCAAGCCAGGGACAGAATGAGCCCAG
GGTCAATTTTTTGCCCGTCATTCCCCAAACCGAGAACAGCAAACTTGCCA
GAAGAAAGGCATGAAGTCAAAAAAAAAATTGCCATGCGCACGGGGGGGGG
GGGCGGGGCGTACATGCCGCCCAGAAGGAGCCCTCTGTCGTGACTACAAT
GCAGGCACGAAAGCAAAACCAAAAAGAAAATACTCCGTACAATGCAGCAA
AAGTCGTGCGACGAATGTAGGTTGTTGAATGAGACGTGGAGGTCAATGGG
ATGTCTGTTTTGTTATTAACCTCTTTCTTATTGTGACTTCGAGAGGGTCC
CTCCCGCTGCTGCGAATTATATTCTCCGCCGCCGTCAACGTACTTCTGGG
CGGATACTCCGCGACCGTCGCCGCACGTCCTACTACTGTCTGACGTTGAC
TCCCAACCCCAAAACTTCCTCCCCATACACCCCTTTGTCCCGATATAAAA
AAAAGGTACATGGGCGAGGCCGGGTATCGAAGCGCCTGCGGGAATTGGCT
GGCGACCCCCAGCCAACCCCTCGGAGAGTACGCATCTCGCGATGAAGCGG
GGGCGAACGGCGGCGAGAGCAGGGACGGTGCTCTATTTGGTGGAGGCGGT
GGGGGGGCAGGGGACAACAGCGCCAGCGTCCTGTTCGTCCGGGAGTCCAA
GCTTATTGAGGTGTTCGCCTTCCCGCTGTCTGCCTTATTCATCGTTGTAA
CAACAGCAAAAGTAGATGGCACCTAATAAGAAGCGTTTTGATGTTTATGA
AAAACCCATATCATTATAGAATACAAAAGGAAACGTATCGTGTTATTATT
TGTTTGCCCGGCTTTCTGTATTTTACTACGGAACGAGACCTTTTTTATAA
TAAAATGCGTTTTTTTTCAGGAAGAAAGAGAAGAATCTCGCAGCTCAGAT
TTGTCAGGAACATCAAATTTATGGCGTTGATTTTATTTAGGTCAGTATAG
GACGCAGGCAAACTTATTTTACTTCCCACGCAACAAGCGGTTGTTTTTGG
CCCGGCTTTCCATGGTTGACTCGGGAAAGGTGAGTGTCTGTGACTTCCAC
TGCGACACGACACGTGGCAAATATACGGGGTTCTGAATCAGAGTGTACCA
GGAAAAATATTCATGTTGACACTAGTTTTGCTCAGTCTGGAAAACATGCA
CTTTTCTACATTATCATAGGCTTACAGTGCAACACGCAGGCGGTGTCAAA
ATCAGGTTTCTCTCCGAAGAGAAAACGTAAAAACCAAACAAGACAATACC
ATCACGACCGTTGTGATGCGGCTGTACGTCATGCGAATATGGTATGATCT
TGGCCACCTACGTAGCAAAATTAGCCTTAATGTTGCGCCGTTTCTTACTA
GCTCTACTGTCCCGTTTGCCCTGTACAAATAACGAATGGGTCTACATGCA
AGTACAGATTGAGACGGAAAGGGTTAATGGCAGACAACAAAAGAGGTTTG
CCTTGGGATGGAGGGAGTAAGCGCACTCAGTTGATTCTCGCCTCAGTCTT
TTGCTACGCATTTCAGTTGAGACGAAGTGTCGTCAATAGCCGGAGCACAA
TGTAGGAATCGAGCCGCATGGGATTCTGCTTGTAGTGCAGACAGCTGTAG
GAAGGATTTTTGCTGCAGAAGGTCTGTATGTATGGAGTTGGACGTGAGCA
AGCAGGAAGAGCGCTCAATGGAACATCTCGGCGTGCGACTGTAGTTGTGT
ATTTTCACTCTCCACCAAGGCGGTGTATCGGCGACGACTTTCTCAAAAAT
GCTTTCTCAAAAATGCTCACGGAGTACTAAATGTTTTTTCCTCTAACGTT
AGTGTACCACACCAAATAATTGTCAGAACGAAATTTATTCCACTTCTTTA
TTTATTCCACTTGTTTAGTGCACTGGCTCACTGGCGATGTGTTTTAGAGG
TGTGGGGAGGGAGAGGATTCATACACGCACACACCACCGCGTTGTCCAGT
CTGAGAGGTAACCCCGTTGCTGTTGCGACGTGATTTCCACCATCTCCTCA
TCACCGCGGCCGGCAAAACAACTACAATGTCAAGTCATGCTGACTACGAA
GTACTTCGTGTTCCAGCAGAGCCATGTGCTCAGCAACGCAGGCTTCTTTC
GCTTCCTTTGTTGCGTCAACCCAACCCGTCTGACCGTCCACGCCACACGA
CGTGCTCCCGCACGCGGCGGCAGGCGTTGCAGTCTGCACTGCCAGACAAC
ACCAGGTTTGTCCAGGCCCGCGTGGAAGACATCGCACGGGCGAGTGGTAG
TGGTAAAGGCGGCGGAGTTTGTAGCGGCAGAGGCACAGCAGCCGGCCGTT
TTTGCGCTGCCGCTGCGGCGACAACCAGCATCGGTCCCGCCGGTAGTAGA
ACCGGCAGCAGCAGCAGCAGCAGCAGCGGCATCGACAAGGGGGGCGACAG
CGGAGGGGGGAGGTGGACTCAGGAGTTCGACCTTCTTGTCGGCGCGGACG
GCCCGGAGTCCTTCGTGCGCGACATGGTCATGGTCATGTCTTCGCCCGGC
CCAGCAACGCCCGCGGCAGCAGGAGCAGGAGCAGAAGAAGGAGCAGGAAT
TAACCGCGGTGGCGTTTCTTCTGCCGCTGCCAGAAGCGAGGAGTCGGGAG
GAGGAGGAGCCGCGGTGGCTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig73:169460..174930-

>mRNA_P-littoralis_Contig73.34.3 ID=mRNA_P-littoralis_Contig73.34.3|Name=mRNA_P-littoralis_Contig73.34.3|organism=Pylaiella littoralis U1_48|type=CDS|length=1323bp|location=Sequence derived from alignment at P-littoralis_Contig73:169460..174930- (Pylaiella littoralis U1_48)
GACGGTGAACCTTCCTGGCGCAGACACCGGTGTGTGGTATGGCATCCTTA
CCTACAAGCCGGGGCCGGTCAGCTCACATCGTGTGAAGCTCGAGAGGTCA
TCATGGTGACAACCACCTTAGTGGGGGGGGGCTTGCAACGAGCAATGGTT
GTTTGCAACAGCGCCAGAAGAGTTGTGATGCTGGTGCCAAGGGCACGAAG
CACCAAAGGCACCAACAACGGCAGCAACAGCGGGATGACCATCAGCAGTC
GATTGCTGCTGTGCCCGCTCTCAACAGCAACAAGACCAGCAGCGGAAGCG
TCAGGAGATGAAACTAAGGAAGGCTCTGAGGCGGTCCATCGGCCCGTCAG
AGATATAGTGGTAGTGGGAGCAGGCGTGGCAGGCCTGGCTAGCGCTGCTT
GCCTTGCCCGCATCGGGTTACGAGTGACCATCGCTGAGATCCGGGGCCAG
GACCGCTGGGGACACGACCGGGAAGAACGTGGGGCAAGAGTGGGGGTAGG
GGGGACGGCGGCGGGGAAAAGGGCGAAACACAAGGAACCCGCCGCATTGG
AAAAAAATGGGGTTTCCAACACCAGAGACGATGCCATCGACCCGGGGGTG
GGAATCTGGACGCACGGCTTGGCTTGCCTCGACGAGCTTGGCATTCTCCA
GCAGCTGGAGGCGGAAGGAAGGTACATGGGCGAGGCCGGGTATCGAAGCG
CCTGCGGGAATTGGCTGGCGACCCCCAGCCAACCCCTCGGAGAGTACGCA
TCTCGCGATGAAGCGGGGGCGAACGGCGGCGAGAGCAGGGACGGTGCTCT
ATTTGGTGGAGGCGGTGGGGGGGCAGGGGACAACAGCGCCAGCGTCCTGT
TCGTCCGGGAGTCCAAGCTTATTGAGGCGTTGCAGTCTGCACTGCCAGAC
AACACCAGGTTTGTCCAGGCCCGCGTGGAAGACATCGCACGGGCGAGTGG
TAGTGGTAAAGGCGGCGGAGTTTGTAGCGGCAGAGGCACAGCAGCCGGCC
GTTTTTGCGCTGCCGCTGCGGCGACAACCAGCATCGGTCCCGCCGGTAGT
AGAACCGGCAGCAGCAGCAGCAGCAGCAGCGGCATCGACAAGGGGGGCGA
CAGCGGAGGGGGGAGGTGGACTCAGGAGTTCGACCTTCTTGTCGGCGCGG
ACGGCCCGGAGTCCTTCGTGCGCGACATGGTCATGGTCATGTCTTCGCCC
GGCCCAGCAACGCCCGCGGCAGCAGGAGCAGGAGCAGAAGAAGGAGCAGG
AATTAACCGCGGTGGCGTTTCTTCTGCCGCTGCCAGAAGCGAGGAGTCGG
GAGGAGGAGGAGCCGCGGTGGCT
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