mRNA_P-littoralis_Contig73.23.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig73.23.2
Unique NamemRNA_P-littoralis_Contig73.23.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig73.23.2 vs. uniprot
Match: D7G4Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Z8_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 5.690e-19
Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = 3 
Query:   12 LRKKDNKEYATCDQNIWNDKNTCKVTLSMLLASKDHPHACQLCLCDVGGYPSIGIPTEEKDDRGYT 209
            ++KK+  ++ TCDQNIW D+ +CKV+LS+L  S+DHPH C LCL DVGG PS+G  T E D RGY+
Sbjct:  673 VKKKNGGDFLTCDQNIWKDETSCKVSLSLLKPSQDHPHECSLCLKDVGGTPSLGTDTGETDSRGYS 738
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BLAST of mRNA_P-littoralis_Contig73.23.2 vs. uniprot
Match: A0A6H5JXZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ5_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 3.950e-8
Identity = 31/76 (40.79%), Postives = 43/76 (56.58%), Query Frame = 3 
Query:   36 YATCDQNIWNDKNTCKVTLSMLLASKDHPHACQLCLCDVGGYPSIGIPTEEKDDRGYTETC-LHNCPSSR*GLKWS 260
            ++ CDQ    D  TC+V+ S+L A    P  CQLCL  VGG PS+G+ + EK+ +G  E   +H C +   G K S
Sbjct:   51 FSPCDQKDSQDSTTCQVSCSILSARGSDPPICQLCLTSVGGTPSLGVLSGEKNSQGRDEWLNIHACWTICCGAKTS 126
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig73.23.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4Z8_ECTSI5.690e-1957.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXZ5_9PHAE3.950e-840.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig73contigP-littoralis_Contig73:142343..145454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G4Z8
PFAMsDimer_Tnp_hAT
Model size369
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons4
Evalue1.12e-08
EggNOG OGs2CZK4@1|root,2SARG@2759|Eukaryota
Cds size150
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig73.23.2prot_P-littoralis_Contig73.23.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig73 144356..144877 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791511.9789617-UTR-P-littoralis_Contig73:142342..1424251680791511.9789617-UTR-P-littoralis_Contig73:142342..142425Pylaiella littoralis U1_48UTRP-littoralis_Contig73 142343..142425 -
1680791511.9922833-UTR-P-littoralis_Contig73:144314..1443551680791511.9922833-UTR-P-littoralis_Contig73:144314..144355Pylaiella littoralis U1_48UTRP-littoralis_Contig73 144315..144355 -
1680791512.0326152-UTR-P-littoralis_Contig73:144877..1448891680791512.0326152-UTR-P-littoralis_Contig73:144877..144889Pylaiella littoralis U1_48UTRP-littoralis_Contig73 144878..144889 -
1680791512.052892-UTR-P-littoralis_Contig73:145371..1454541680791512.052892-UTR-P-littoralis_Contig73:145371..145454Pylaiella littoralis U1_48UTRP-littoralis_Contig73 145372..145454 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791512.0017366-CDS-P-littoralis_Contig73:144355..1443901680791512.0017366-CDS-P-littoralis_Contig73:144355..144390Pylaiella littoralis U1_48CDSP-littoralis_Contig73 144356..144390 -
1680791512.0192132-CDS-P-littoralis_Contig73:144762..1448771680791512.0192132-CDS-P-littoralis_Contig73:144762..144877Pylaiella littoralis U1_48CDSP-littoralis_Contig73 144763..144877 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig73.23.2

>prot_P-littoralis_Contig73.23.2 ID=prot_P-littoralis_Contig73.23.2|Name=mRNA_P-littoralis_Contig73.23.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=50bp
MLLASKDHPHACQLCLCDVGGYPSIGIPTEEKDDRGYTETCLHNCPSSR*
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mRNA from alignment at P-littoralis_Contig73:142343..145454-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig73.23.2 ID=mRNA_P-littoralis_Contig73.23.2|Name=mRNA_P-littoralis_Contig73.23.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3112bp|location=Sequence derived from alignment at P-littoralis_Contig73:142343..145454- (Pylaiella littoralis U1_48)
TGAAGGTCTGCCTTCGTAAAAAAGATAACAAAGAATACGCGACGTGCGAT
CAAAACATCTGGAACGACAAGAACACTTGCAAGGTATGTTTGGGTTGAAA
TGTCATGTGTGTGTACATGAATCTAATGCTCGTTTGTTCAAGTGCTGCAG
ACCGTGTGTTGGGGGTGTCGGTGTGGAGTGAGTTGCATGTATGTGCTCTG
TGCACCGCCTGTGTGTTGCATTTTGTGTGTTCTTTACGAACCCTTTGATG
ACCCTCACGAATGATTTTGTATAATATTTCGATAATATTTTCCTACGTCT
TTCAACAACCATCATCGTTCTTTTTTTTGCATTGCATATGTCCAAGCTGC
TCCACTGCCACAACTGTAGCTGTGCCCTGAATCTGTTGCTCGTTTGTTTC
AGTCCTGCAGACGGTGTGTTGCTGATGACAATGTGGTCTCCGGATTGCAC
GTGCTGTCTTTTCACATGTATGTGTGTTCGTAGTGCCGGAATTTTTTTCT
CTGTTCTTCCGTCTTTCAACAATATCAGCACTTCGTTTTTTTTTTCATGC
CCCGTATATTTCAAGGTCACGCTTTCCATGCTACTCGCCAGCAAGGACCA
TCCACACGCCTGCCAGCTCTGCCTCTGTGACGTCGGGGGGTACCCTTCAA
TCGGTATCCCGACCGAAGAAAAAGACGATCGTGGATACACGGGTGAGCAA
ACTTGGGGCGAGAGCTTGGTCCGGTCCGTTTTTTTGCCGTCGGGATTTTT
TTTGCCGTCGGGAGGTTTCGTCCCGTTGTGCCGTCGGGAGGTTGTCCTCC
CGTTGGTCCGTCCGTCGGGCGCATTTTGATTGTTGGGAGATCTACCGCGA
CCGCGTATTCTCTAACTGCGCTGTAGTCGTGACTCACGACGATGTCTCGT
ACCGAGTGTTGCAATCCACTTGCAGCAAATTGATTAGTATGTCAGCAGTG
CTTTTGTCAGCATGTAGGTTAAACTTGTGAGCACACTTTAACATGCACCA
TGTTGTTCTCAGACTGCTGTTCTCTCGTTCGGTGCACATTATTTTTTTTC
TAACTCCTGAGCAGAAACATGTTTACACAACTGTCCTTCAAGCCGTTAGG
GACTCAAATGGTCAACCTTTCATGATCGATGCCCCTGCAGGTACGGGTAA
AACATACACCGAAAAATGTATAGCAGCTAGATTAAGGGGTGAGGACAAAA
CGGTTCTAATTGTTGCGTCTACAGGTATAGCTGCCTTGCAACTGCCAGGT
GGTTGGACTGCGCATTCAATGTTCAAATTGCCAATGGATGACGCTATGAC
CTCATCGTGTGTGTGCAACATTAAAACTCAGACTCAACGCGCAGAGCTTA
TACGAAAATCTGACCTCATTATATGGGATGAACTACCCATGACTCACCGT
TACTGTGTGGAGGCCCTCGACAGAACTCTCCAAGACCTTATGAGAAACAA
AAAACTTTTCGGTGGCAAAACAGTCCTTTTTAGTGGTGACTGGCGTCAGA
CAGGCCCAATCGTAAAGAACGGCTCAGCGACAGACACAGTAGACGCTGCT
TTCATCTCCAGCCCATTGTGGAAAGATGTCAAACGGATGAAATTAACCAA
ATCACAACGTGACCGGTCAGACCCTCAATACGCAGCGTTTGTTCGTGCTG
TAGGGGAAGGCTCACATCCTACAATAACCATCAACGGATCAGATATGATC
GCCCTCAACAACCACAACGACCCAGACACGAACAACCATTTCCAATTACA
ATACACTACAGAGTTTGATGACCTCATGGATTTCGTTTACCCCGATGTCA
CAGAAGACACCAGCAAATGGAATAATCGAGCTATCCTCGCCACCACCAAC
AACGCTATAGACCGCTCAAACGTTGCCGTTTCAGACAAGCGACCCGGTAA
TGACTGCTCATTTTTCAGTTCAGACTCGCTTATAAGAGACGAAACAACAC
CTCACACAGCCTTCGCATCACCTGAACACCTTAACCAACTCAACGTGCAA
GGTGTCCCACCCCATGACCTCATTATTAAATCAGACGGTCTGGCGATGAT
AACACGTAACCTCAACTTTTCAGAAGGTCTCGTCAACGGACAAAAGTGCG
TATTGCACGCCGTTTCACCTAACAGTCGAGTTATTCAGGTAGAACTGCTC
ACAGATGAAAACCCCAGGCCCATAGTTTTAATTCCAAGAATTAGCTTCAC
CGCTAAGGTGGGCAGAAACGGCATAAACTTCATGCGTGTCCAGTTTCCGC
TCAGAACCGCTTACTCAATGACCATCAACAAAAGCCAAGGGCAAACATTG
AACAAAATCGGTTTAGACTTGAGATCCCCTGCTTTCAGTCACGGTCAACT
CTACGTTGCACTTTCGAGGGCACCTGCCCGCCTATCCGTAATGTGTCTCC
TGCCGCCTGAGCATATCTTTGAAGGGATACCGTACACAGAAAATGTCGTT
TACTCTCCCTTCATCCACGCCGCCAACGATACATCCCCACCATCACTTTC
CCCGAATTCACCACCGCCAACTTTACCTCCACCACCACCGCAACCTGTAT
GGACAGTTCAGCATGAGATTGGTGACGGAGCTTGTGGCTTTAGGGCAATT
GCTAGACGTTTCCTCGGTGATCCTGAGTTGCACTTACAAGCACGACATCA
TATTGTACTGTACCTCGCACACAACAGTCACGACGACAACCTACACATCC
ACGACGGCATTGACACAGAACTTCTATACTGTTCAGGGTTACCGCCCTCT
ACTTACTGCTCATACGAAGACTACCTCTCAAGAATGTCTATGCCTACCAC
GTACATGGGCCAACCGGAAATTACTGCAGCCATCGCTGTGTATGGAACCC
CTATAATTCCACACTTCGATAGTTCTACCTTACCGCAGCCAGCCATCGCC
GATCCTAATGTACTCCACTTAAGATTCACACCTGCCTCACGTCATTACGA
TACATTCGCCATATCCAACCTTAACACTCAACACTAACATGACACGTTAC
AATTCGACGCCCGACTATTTCCTGTTCAGGATGACTCCGTTCCACAAGCG
CGGAGTCGACTGCTCGCGACTGCTCGCCACACCATCGTGACGCTCTCATG
GTGTGCGGAAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig73:142343..145454-

>mRNA_P-littoralis_Contig73.23.2 ID=mRNA_P-littoralis_Contig73.23.2|Name=mRNA_P-littoralis_Contig73.23.2|organism=Pylaiella littoralis U1_48|type=CDS|length=150bp|location=Sequence derived from alignment at P-littoralis_Contig73:142343..145454- (Pylaiella littoralis U1_48)
ATGCTACTCGCCAGCAAGGACCATCCACACGCCTGCCAGCTCTGCCTCTG
TGACGTCGGGGGGTACCCTTCAATCGGTATCCCGACCGAAGAAAAAGACG
ATCGTGGATACACGGAAACATGTTTACACAACTGTCCTTCAAGCCGTTAG
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