mRNA_P-littoralis_Contig73.21.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig73.21.1
Unique NamemRNA_P-littoralis_Contig73.21.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig73.21.1 vs. uniprot
Match: A0A6H5K6I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6I9_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 9.650e-11
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 2 
Query:    2 MLAVSEAETAENVRARSRNSSVAVLCPRYITVEPLSAPTVVEGP 133
            MLAV++AE AENVRARSRNS  AVLCPRYI+VEPL+A  VVE P
Sbjct:  303 MLAVTQAEAAENVRARSRNSPNAVLCPRYISVEPLAAAPVVEAP 346
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BLAST of mRNA_P-littoralis_Contig73.21.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 2.210e-8
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 2 
Query:    2 MLAVSEAETAENVRARSRNSSVAVLCPRYITVEPLSAPTVVE 127
            MLAV++A  AENVR+RSRNS  AVLCPRYI+VEPL+A  VVE
Sbjct:  975 MLAVTQAVAAENVRSRSRNSPNAVLCPRYISVEPLAATPVVE 1016
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig73.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K6I9_9PHAE9.650e-1177.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI2.210e-873.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig73contigP-littoralis_Contig73:139640..139867 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size228
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size165
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791511.9183033-UTR-P-littoralis_Contig73:139639..1397011680791511.9183033-UTR-P-littoralis_Contig73:139639..139701Pylaiella littoralis U1_48UTRP-littoralis_Contig73 139640..139701 -
1680791511.9423387-UTR-P-littoralis_Contig73:139866..1398671680791511.9423387-UTR-P-littoralis_Contig73:139866..139867Pylaiella littoralis U1_48UTRP-littoralis_Contig73 139867..139867 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791511.9323792-CDS-P-littoralis_Contig73:139701..1398661680791511.9323792-CDS-P-littoralis_Contig73:139701..139866Pylaiella littoralis U1_48CDSP-littoralis_Contig73 139702..139866 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig73.21.1prot_P-littoralis_Contig73.21.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig73 139702..139866 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig73.21.1

>prot_P-littoralis_Contig73.21.1 ID=prot_P-littoralis_Contig73.21.1|Name=mRNA_P-littoralis_Contig73.21.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=55bp
MLAVSEAETAENVRARSRNSSVAVLCPRYITVEPLSAPTVVEGPSRPRRA
RRQL*
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mRNA from alignment at P-littoralis_Contig73:139640..139867-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig73.21.1 ID=mRNA_P-littoralis_Contig73.21.1|Name=mRNA_P-littoralis_Contig73.21.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=228bp|location=Sequence derived from alignment at P-littoralis_Contig73:139640..139867- (Pylaiella littoralis U1_48)
TATGTTGGCAGTATCAGAGGCGGAGACCGCCGAGAATGTTCGCGCGCGAT
CCAGGAATTCATCTGTCGCTGTTTTGTGTCCGCGCTACATTACCGTCGAA
CCCCTTTCGGCGCCCACGGTAGTAGAGGGACCGTCCCGGCCGCGACGGGC
CCGGCGACAGTTGTGAACCCATACGCGCCGTCGAAGTAGAAGTATGTATG
CCGCCCAAGCAGAGGCTCTTGGAGGGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig73:139640..139867-

>mRNA_P-littoralis_Contig73.21.1 ID=mRNA_P-littoralis_Contig73.21.1|Name=mRNA_P-littoralis_Contig73.21.1|organism=Pylaiella littoralis U1_48|type=CDS|length=165bp|location=Sequence derived from alignment at P-littoralis_Contig73:139640..139867- (Pylaiella littoralis U1_48)
ATGTTGGCAGTATCAGAGGCGGAGACCGCCGAGAATGTTCGCGCGCGATC
CAGGAATTCATCTGTCGCTGTTTTGTGTCCGCGCTACATTACCGTCGAAC
CCCTTTCGGCGCCCACGGTAGTAGAGGGACCGTCCCGGCCGCGACGGGCC
CGGCGACAGTTGTGA
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