mRNA_P-littoralis_Contig1184.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1184.10.1
Unique NamemRNA_P-littoralis_Contig1184.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1184.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1184contigP-littoralis_Contig1184:21096..22818 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size609
Hectar predicted targeting categoryother localisation
Exons2
Cds size606
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789497.0462806-CDS-P-littoralis_Contig1184:21097..213091680789497.0462806-CDS-P-littoralis_Contig1184:21097..21309Pylaiella littoralis U1_48CDSP-littoralis_Contig1184 21098..21309 -
1680789497.057175-CDS-P-littoralis_Contig1184:22424..228181680789497.057175-CDS-P-littoralis_Contig1184:22424..22818Pylaiella littoralis U1_48CDSP-littoralis_Contig1184 22425..22818 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1184.10.1prot_P-littoralis_Contig1184.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1184 21098..22818 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1184.10.1

>prot_P-littoralis_Contig1184.10.1 ID=prot_P-littoralis_Contig1184.10.1|Name=mRNA_P-littoralis_Contig1184.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=202bp
FCRSTPPREPHSPAILRQRGSAAQLATRRLFFYREGHLRLGTHGPRCECT
MAGMVEVSSAFICSAGAGSGAGSSAASTTSGTTATAAATAAAVSIESGTT
ASTAAAASAASAAVLALLLYCCAADPTRVLTGSSSRPLRHAAAGRGLVAA
SWQRLTHGGVGADAGGAVNEECATRIQPPHPSSLLTTHAHTRVVEFICGA
CV
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mRNA from alignment at P-littoralis_Contig1184:21096..22818-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1184.10.1 ID=mRNA_P-littoralis_Contig1184.10.1|Name=mRNA_P-littoralis_Contig1184.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1723bp|location=Sequence derived from alignment at P-littoralis_Contig1184:21096..22818- (Pylaiella littoralis U1_48)
TTCTGTAGGTCCACACCCCCACGGGAACCCCACAGTCCCGCCATTCTCCG
TCAGCGCGGGAGCGCGGCACAACTCGCCACACGCCGCCTGTTCTTCTATC
GGGAAGGGCACCTACGTCTCGGCACCCACGGCCCAAGGTGTGAGTGCACG
ATGGCAGGAATGGTGGAGGTGTCGTCTGCGTTCATTTGCAGTGCTGGTGC
TGGTAGTGGTGCAGGTTCTTCTGCTGCCTCCACCACATCTGGTACTACTG
CAACTGCTGCTGCTACGGCTGCTGCTGTCTCTATTGAATCTGGTACTACT
GCGTCCACGGCTGCTGCTGCTTCTGCTGCTTCTGCTGCTGTACTCGCACT
TCTGCTGTACTGCTGTGCTGCTGATCCGACGAGGGTCTTGACGGGTGAGT
TGACAGTCAGCTGGATGCTGGATGTTGTTGTTTCCATTGCTGTGATATTA
CTGTTGATGCTGCTGATGCTGATGCTGTGTTCTTGCGTTCGTTTGATCGA
GTAAAACTCACCCCGTACGTCTTCCTCCTTTACATGCTGCACAGGTGTTC
ACGAGTGAGTTGACATTCGACTGGTTGTTGTTTCCACGTTGGTTGCATTG
CTGTTGCTCTTGCCGATGTGCTGGTGCTGTAGTGCTTGATGTTGAGTAAA
ACTGGCCCCATACTTCTGGCTTTGCATTCAGCCAGCGCGAGAAGAAGCTG
GAGTCGCAGTCACACTGGGTAGGACCGAAACGGTCGGATAGGGAGCCGGT
AAACATGTCAATTTATTAACGTGACATCACTGATGCCAGGCGGGGCATCA
TCAAGTCGTACCCTATGTTGAGTAGGGCGTGGTCTGAGATGAGGGCGAAG
GAGATGTGGATCAACATCGCATAGTCTTGGAGGTAACCATCATAATTTAT
ATTTGGTGCGAGGTGCAGTTTGCCCGTGTATGGGTGTTGTGTGGTGAGGT
GTGGGCGCTGGGCCGTGTGATATGGTGTGGGCTCTGGGCCGTGGCACTGG
GCCGTATACTTGAAAAAGCCTCTGGGCCTGGAGTCTGGAGGCCCTGGGCC
TGTAGTTTGGGAAGGCGCTGGGCCGAACTCGATAGATTGATCAGAAGCAC
AGAGGCAACACGGTCGCTCGGGTGGCGCACTCAAAGCTTCAAGAAGAAGC
GACCTACGACATCATACGAAACACGTAACCCCCCGCATCGATCCACAGTG
TTCCCGAACAATGTCTCCGTAGAACTGCAACCAATGAACAAACGATCGCA
TGCCGCTGCGAGTACATCCAACACATCACATAGCTAGCGGGATCGCTCTG
AACGGAACCCCGTTGCAGTGCCCTGTGCAAAATGTGTCTCTTGTCTGCAA
CCTCCAACGCCGGTTTGGGCCCCGCAATCTTGTACTGTGCCCTTTATGTT
GCGGGTGCGAGGCACTGTTTTTCGAAGATGACGTGATAACTTTGTCTTAC
TAGTCGTCCCCTATGATACTCTCCGTCGTCATGCCCTCCTTTCGAACCCA
CTTTTTCAGGATCATCCTCCCGGCCGCTGCGCCATGCAGCTGCAGGAAGG
GGACTCGTCGCAGCGTCATGGCAGCGCCTTACCCACGGCGGCGTTGGGGC
GGATGCAGGGGGTGCAGTGAATGAAGAGTGCGCAACACGCATCCAGCCTC
CGCACCCGTCCTCGCTTTTAACAACACACGCACACACACGTGTGGTGGAA
TTTATTTGTGGTGCATGTGTGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1184:21096..22818-

>mRNA_P-littoralis_Contig1184.10.1 ID=mRNA_P-littoralis_Contig1184.10.1|Name=mRNA_P-littoralis_Contig1184.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=606bp|location=Sequence derived from alignment at P-littoralis_Contig1184:21096..22818- (Pylaiella littoralis U1_48)
TTCTGTAGGTCCACACCCCCACGGGAACCCCACAGTCCCGCCATTCTCCG
TCAGCGCGGGAGCGCGGCACAACTCGCCACACGCCGCCTGTTCTTCTATC
GGGAAGGGCACCTACGTCTCGGCACCCACGGCCCAAGGTGTGAGTGCACG
ATGGCAGGAATGGTGGAGGTGTCGTCTGCGTTCATTTGCAGTGCTGGTGC
TGGTAGTGGTGCAGGTTCTTCTGCTGCCTCCACCACATCTGGTACTACTG
CAACTGCTGCTGCTACGGCTGCTGCTGTCTCTATTGAATCTGGTACTACT
GCGTCCACGGCTGCTGCTGCTTCTGCTGCTTCTGCTGCTGTACTCGCACT
TCTGCTGTACTGCTGTGCTGCTGATCCGACGAGGGTCTTGACGGGATCAT
CCTCCCGGCCGCTGCGCCATGCAGCTGCAGGAAGGGGACTCGTCGCAGCG
TCATGGCAGCGCCTTACCCACGGCGGCGTTGGGGCGGATGCAGGGGGTGC
AGTGAATGAAGAGTGCGCAACACGCATCCAGCCTCCGCACCCGTCCTCGC
TTTTAACAACACACGCACACACACGTGTGGTGGAATTTATTTGTGGTGCA
TGTGTG
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