mRNA_P-littoralis_Contig73.8.8 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig73.8.8 vs. uniprot
Match: A0A6H5JV62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV62_9PHAE) HSP 1 Score: 665 bits (1716), Expect = 3.520e-203 Identity = 418/625 (66.88%), Postives = 444/625 (71.04%), Query Frame = 2
Query: 2249 LEGTDTNEADAAAARATEAKARLVEANARSEMAAFEAKXXXXXXXXXXEAATAVVMPLPATREAVTEDGRVGRRENAFLDTYFAFFGRFVRLETESEARRTLIELALEEATPPPTKAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGKNMGVLRRGVTPEKGASLWAGVGIGAMLQ-------------GASPKDGEVYANMAREQLNGAQDFDADEAGGGGGPWSSCGNRIQQKVRADLMLSVLYDMLGRYDESDTFLDSAYEGVADSSTHLHDVLDLLTASKQERDWCGTPDSGPQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGTGPGGTNGEVSSVGIGTPRQQTPMLITEGNALSLLNRLSWDTLRRFTTLPFAAASRGGHGGSSFQALAEWRSGEGWYGTLVKAHSHLCADLNDDVRALPRCPLAVGLLKSKLSWLHSCLGRTTAAADKSQVMLALLEPFPGAGRWSLWRHPLHLAACHLAIAGRPGAYEKLRRTFNVFLRPGMFDLPPFESFHKLTQLCHSCSPTVTLLVKAYKPHLEPLLSPPPLA 4084
L GTDT EADAAAARA EAKARL EANARSE+AA EAKXXXXXXXXXX ATAVV+PLPATRE +T DGRVGRRENAFLDTYFAFFGRFVR RTL ELAL++AT T A G+ L+RGVTPEKGASLWAGVGIGAMLQ GASP+DGEVYA MAR+QL+ A+ +SC NR QQ+VRADLML VLYDMLGRYD+SD LD+ +EGVA+SSTHLHDVLDLL ASKQERDW G+P +G QHXXXXXXXXXXXXXXXXXXXXXXXXXXX G+ VSSVGIGTPRQQTPMLITEGNALSLLNRLSWD LRRFT LPFAAASRGGHGGSS+QAL EWRSGEGWYGTLVKAHSHLCADLNDDVRALPRCPLAVGLLKSKLSWLHSCLGRTTAAADKSQVMLALLEPFPGAGRWSLWRHPLHLAACHLAIAGRPGAYEKLRRTFN FLRPGMF+LP FESFH +T+LCHSCSPTV+LLVKAY PHLEPLLS PP+A
Sbjct: 506 LVGTDTQEADAAAARAVEAKARLAEANARSEIAAHEAKXXXXXXXXXXXXATAVVLPLPATREEITRDGRVGRRENAFLDTYFAFFGRFVRWVFLF--LRTLTELALQDATT--TSADDDPGDQARSPPSPGRTSSPAVPGGWRAGGWGASRLPADGPGEGGRANGGEGGGVRSRDRQGSRAP------------------------------GRVASGLKRGVTPEKGASLWAGVGIGAMLQVEVTPLTLRIYVGGASPQDGEVYAKMARDQLDSAK--------------ASCANRRQQRVRADLMLCVLYDMLGRYDKSDECLDAGFEGVAESSTHLHDVLDLLLASKQERDWRGSPGAGHQHXXXXXXXXXXXXXXXXXXXXXXXXXXXGK-------GSGAVVSSVGIGTPRQQTPMLITEGNALSLLNRLSWDMLRRFTKLPFAAASRGGHGGSSYQALVEWRSGEGWYGTLVKAHSHLCADLNDDVRALPRCPLAVGLLKSKLSWLHSCLGRTTAAADKSQVMLALLEPFPGAGRWSLWRHPLHLAACHLAIAGRPGAYEKLRRTFNAFLRPGMFELPGFESFHTITRLCHSCSPTVSLLVKAYMPHLEPLLSTPPVA 1075
BLAST of mRNA_P-littoralis_Contig73.8.8 vs. uniprot
Match: D7FM09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM09_ECTSI) HSP 1 Score: 635 bits (1638), Expect = 9.090e-194 Identity = 480/907 (52.92%), Postives = 512/907 (56.45%), Query Frame = 2
Query: 2255 GTDTNEADAAAARATEAKARLVEANARSEMAAFEAKXXXXXXXXXXEAATAVVMPLPATREAVTEDGRVGRRENAFLDTYFAFFGRFVRL-ETESEARRTLIELALEEATPPPTKAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGKNMGVLRRGVTPEKGASLWAGVGIGAMLQGASPKDGEVYANMAREQLNGAQDFDADEAGGGGGPWSSCGNRIQQKVRADLMLSVLYDMLGRYDESDTFLDSAYEGVADSSTHLHDVLDLLTASKQERDWCGTPDSGPQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTG------GTGPGGTNGEVSSVGIGTPRQQTPMLITEGNALSLLNRLSWDTLRRFTTLPFAAASRGGHGGSSFQALAEWRSGEGWYGTLVKAHSHLCADLNDDVRALPRCPLAVGLLKSKLSWLHSCLGRTTAAADKSQVMLALLEPFPGAGRWSLWRHPLHLAACHLAIAGRPGAYEKLRRTFNVFLRPGMFDLPPFESFHKLTQLCHSCSPTVTLLVKAYKPHLEPLLSPPPLATTTXXXXXXXXXXXXXXXXXNAAPSKPCSSSFPWSPSSVAAPAAREHMNIPGHGGKQQQLEGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVTPLSNPSFSSPSXXXXXXXXXXPTWSAKRHHELAAGGRVDCPSAEXXXXXXXAGEQGFRAPAAPTNPGEFQVPVAAVDGCPSPGGGGERAAVGADGGGVGHLPAG--PHAASNHIGVFGPGTRVMDRNLSFQDYHALMEMFAVDQKLNASLATPLDPIDDPLADWNSSVEDQVGPELGVPS-RSSASEE 4945
GTDT EADAAAARA EAKARLVEANARSEMAA EAKXXXXXXXXXX AATAVV+PLPATRE +T DGRVGRRENAFLDTYFAFFGRFVR + + +AR +PP XXXXXXXXXXX GG G L+RGVTPEKGASLWAGVGIGAMLQGASP+DGEVYA MAR+QL+ A+ + ++ C NR QQ+VRADLML VLYDMLGRYD SD LD+ +EGVA+SSTHLHDVLDLL ASKQERDWCG+P +G QHXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G G G VSSVGIGTPRQQTPMLITEGNALSLLNRLSWDTLRRFT LPFAAASRGGHGGSS QALAEWRSGEGWYGTLVKAHSHLCADLNDDVRALPRCPLAVGLLKSKLSWLHSCLGRTTAAADKSQVMLALLEPFPGAGRWSLWRHPLHLAACHLAIAGRPGAYEKLRRTFN FLRPGM + + G + GG R GG AGE GE GGGG DGG +GH PAG A SNH+G+FGPGTR+MDRNLSFQDY +LMEM AVDQ+LNASLATPLDPIDD LADWNSSVED V G+ S R+S SE+
Sbjct: 480 GTDTQEADAAAARAAEAKARLVEANARSEMAAHEAKXXXXXXXXXXXAATAVVLPLPATREEITRDGRVGRRENAFLDTYFAFFGRFVRAGDPDGQAR-----------SPP---------------------------------------------XXXXXXXXXXXGGAGAGGGGASRLPADGPGEGGRANGGEVGGVRSRDRQGSRAPGGVASG-LKRGVTPEKGASLWAGVGIGAMLQGASPEDGEVYAKMARDQLDTAKAY-GEDGXXXXXXXXXCANRRQQRVRADLMLCVLYDMLGRYDMSDECLDAGFEGVAESSTHLHDVLDLLLASKQERDWCGSPGAGHQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGSGAV---VSSVGIGTPRQQTPMLITEGNALSLLNRLSWDTLRRFTKLPFAAASRGGHGGSSCQALAEWRSGEGWYGTLVKAHSHLCADLNDDVRALPRCPLAVGLLKSKLSWLHSCLGRTTAAADKSQVMLALLEPFPGAGRWSLWRHPLHLAACHLAIAGRPGAYEKLRRTFNAFLRPGM-----------------------------------------------------------------------------------------NSGELKSNAGADGYVAGGD-----------------------------------------------------------------RGAAEKGGG--------------FAGE------------GELV------------GGGGS------DGGALGHSPAGVPEGAGSNHVGMFGPGTRLMDRNLSFQDYQSLMEMLAVDQQLNASLATPLDPIDDLLADWNSSVEDGVESRAGMLSGRNSGSEQ 1127
BLAST of mRNA_P-littoralis_Contig73.8.8 vs. uniprot
Match: A0A6H5JWV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWV9_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 3.250e-12 Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = 2
Query: 4994 LEDMEDPLLGYPNPVANFGPQFTPHDDPAPADSTADRNLSSFDSASSVA 5140
E+ EDPL GYPNP ANFGPQFTPHDDPAPADS+AD+++ + SA+SVA
Sbjct: 28 FEEPEDPLFGYPNPSANFGPQFTPHDDPAPADSSADKDVPAVPSAASVA 76 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig73.8.8 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig73.8.8 >prot_P-littoralis_Contig73.8.8 ID=prot_P-littoralis_Contig73.8.8|Name=mRNA_P-littoralis_Contig73.8.8|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1674bp MMTMNTGDNNQDDHKRSGGFRRHSHHHQQQQHLEFSTAGARQQQGRAGGGback to top mRNA from alignment at P-littoralis_Contig73:28173..58386- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig73.8.8 ID=mRNA_P-littoralis_Contig73.8.8|Name=mRNA_P-littoralis_Contig73.8.8|organism=Pylaiella littoralis U1_48|type=mRNA|length=30214bp|location=Sequence derived from alignment at P-littoralis_Contig73:28173..58386- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig73:28173..58386- >mRNA_P-littoralis_Contig73.8.8 ID=mRNA_P-littoralis_Contig73.8.8|Name=mRNA_P-littoralis_Contig73.8.8|organism=Pylaiella littoralis U1_48|type=CDS|length=5022bp|location=Sequence derived from alignment at P-littoralis_Contig73:28173..58386- (Pylaiella littoralis U1_48)back to top |