mRNA_P-littoralis_Contig73.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig73.2.1
Unique NamemRNA_P-littoralis_Contig73.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig73.2.1 vs. uniprot
Match: A0A345MSI0_9VIRU (Uncharacterized protein n=1 Tax=CRESS virus sp. TaxID=2202563 RepID=A0A345MSI0_9VIRU)

HSP 1 Score: 159 bits (402), Expect = 7.400e-44
Identity = 103/273 (37.73%), Postives = 148/273 (54.21%), Query Frame = 1 
Query:   16 KRKAESTPSSSYKRQRVSKKTY--RRRLPAASRLHPEASR----FQAILRDPMKNWPPVQLVDSFRGATVPLVLSSTRSLMPNSLNDHAGLMFRPSLNNCFKNTTSVSGNDILVWDDNYSSHPEYDGLSDLQNSALRVRFLCAAIQLTYTGNADSRSGTITYAFSNSPETISSDGNSLPDMHMDSGITPIKNSGNTFVIRCFDRPGFIPIGNIASEYMNGCILVVNGCDPKDILVRSKIYVETIPDPSSILADSAKPSPAGPDPKVPYVSHSV 816
            KRKAES   +  KR+ V+KK    R+     SR  P+A++    ++ IL  PM    PVQ  D +RG T PL+LS   S   N+   H G+ F+P +++ +  T S S    L W+    SH EYD LS+L  S  + R +     + Y G  DSR+GTI+Y F+N  + ++  G+S  D+H DSGI  I      FV R FD P F+        Y+N   L   G +P D+LV++K+++E +P  SS LADS+ PSP   +  V Y ++SV
Sbjct:    5 KRKAESQRVTGSKRRTVAKKKTPSRQTKSILSRTSPKATKETDLYRKILASPMSVNVPVQFPDQYRGRTCPLLLSQKLSFGKNTAGTHGGIRFQPRISSFWSATGSASLMSSLGWNAT-QSHAEYDALSNLSVSVSKYRIIAMGCSVQYVGANDSRAGTISYCFNNDMDELTLTGDSFADLHADSGILAIGTKPMEFVCRPFDHPRFVGEEASCESYINSLTLACEGVNPDDLLVKTKVFIEAVPQASSTLADSSTPSPVSGEVAVSYHTNSV 276
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig73.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A345MSI0_9VIRU7.400e-4437.73Uncharacterized protein n=1 Tax=CRESS virus sp. Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig73contigP-littoralis_Contig73:1803..2630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size828
Hectar predicted targeting categoryother localisation
Exons1
Cds size828
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791511.133322-CDS-P-littoralis_Contig73:1802..26301680791511.133322-CDS-P-littoralis_Contig73:1802..2630Pylaiella littoralis U1_48CDSP-littoralis_Contig73 1803..2630 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig73.2.1prot_P-littoralis_Contig73.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig73 1803..2630 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig73.2.1

>prot_P-littoralis_Contig73.2.1 ID=prot_P-littoralis_Contig73.2.1|Name=mRNA_P-littoralis_Contig73.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=276bp
MPRPSKRKAESTPSSSYKRQRVSKKTYRRRLPAASRLHPEASRFQAILRD
PMKNWPPVQLVDSFRGATVPLVLSSTRSLMPNSLNDHAGLMFRPSLNNCF
KNTTSVSGNDILVWDDNYSSHPEYDGLSDLQNSALRVRFLCAAIQLTYTG
NADSRSGTITYAFSNSPETISSDGNSLPDMHMDSGITPIKNSGNTFVIRC
FDRPGFIPIGNIASEYMNGCILVVNGCDPKDILVRSKIYVETIPDPSSIL
ADSAKPSPAGPDPKVPYVSHSVKQD*
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mRNA from alignment at P-littoralis_Contig73:1803..2630+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig73.2.1 ID=mRNA_P-littoralis_Contig73.2.1|Name=mRNA_P-littoralis_Contig73.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=828bp|location=Sequence derived from alignment at P-littoralis_Contig73:1803..2630+ (Pylaiella littoralis U1_48)
ATGCCTCGTCCATCGAAGAGAAAAGCAGAATCTACTCCAAGTTCATCTTA
TAAACGTCAACGCGTTTCCAAAAAGACGTACAGACGTCGACTCCCGGCCG
CATCGCGACTTCACCCAGAAGCATCCCGGTTTCAAGCCATTCTTCGTGAC
CCCATGAAAAACTGGCCACCCGTTCAACTCGTAGACTCTTTTAGAGGGGC
CACTGTACCACTTGTTCTAAGTTCTACACGATCTCTAATGCCTAACAGTC
TTAACGACCATGCCGGTCTTATGTTTAGACCAAGTCTCAACAACTGTTTT
AAAAATACAACATCTGTTTCGGGAAACGATATTTTAGTTTGGGATGATAA
CTACAGTTCTCACCCTGAATATGACGGACTCTCCGACCTACAAAACTCCG
CCCTACGTGTACGTTTTTTATGCGCTGCAATCCAACTCACTTATACAGGC
AACGCCGACTCAAGATCAGGAACAATCACCTATGCATTTTCCAACAGCCC
TGAAACTATTTCATCGGATGGTAACTCGTTGCCAGACATGCACATGGATT
CGGGAATTACCCCCATTAAGAACAGTGGAAACACCTTTGTAATTCGCTGT
TTTGACCGACCAGGCTTCATTCCGATAGGAAACATCGCATCTGAATACAT
GAACGGTTGTATTCTAGTAGTAAACGGATGTGATCCCAAAGACATACTTG
TCCGTAGTAAAATCTACGTCGAAACCATACCTGACCCATCCTCGATTCTT
GCTGACTCAGCTAAACCATCCCCTGCAGGACCCGACCCGAAGGTACCATA
CGTAAGTCATTCCGTAAAGCAGGACTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig73:1803..2630+

>mRNA_P-littoralis_Contig73.2.1 ID=mRNA_P-littoralis_Contig73.2.1|Name=mRNA_P-littoralis_Contig73.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=828bp|location=Sequence derived from alignment at P-littoralis_Contig73:1803..2630+ (Pylaiella littoralis U1_48)
ATGCCTCGTCCATCGAAGAGAAAAGCAGAATCTACTCCAAGTTCATCTTA
TAAACGTCAACGCGTTTCCAAAAAGACGTACAGACGTCGACTCCCGGCCG
CATCGCGACTTCACCCAGAAGCATCCCGGTTTCAAGCCATTCTTCGTGAC
CCCATGAAAAACTGGCCACCCGTTCAACTCGTAGACTCTTTTAGAGGGGC
CACTGTACCACTTGTTCTAAGTTCTACACGATCTCTAATGCCTAACAGTC
TTAACGACCATGCCGGTCTTATGTTTAGACCAAGTCTCAACAACTGTTTT
AAAAATACAACATCTGTTTCGGGAAACGATATTTTAGTTTGGGATGATAA
CTACAGTTCTCACCCTGAATATGACGGACTCTCCGACCTACAAAACTCCG
CCCTACGTGTACGTTTTTTATGCGCTGCAATCCAACTCACTTATACAGGC
AACGCCGACTCAAGATCAGGAACAATCACCTATGCATTTTCCAACAGCCC
TGAAACTATTTCATCGGATGGTAACTCGTTGCCAGACATGCACATGGATT
CGGGAATTACCCCCATTAAGAACAGTGGAAACACCTTTGTAATTCGCTGT
TTTGACCGACCAGGCTTCATTCCGATAGGAAACATCGCATCTGAATACAT
GAACGGTTGTATTCTAGTAGTAAACGGATGTGATCCCAAAGACATACTTG
TCCGTAGTAAAATCTACGTCGAAACCATACCTGACCCATCCTCGATTCTT
GCTGACTCAGCTAAACCATCCCCTGCAGGACCCGACCCGAAGGTACCATA
CGTAAGTCATTCCGTAAAGCAGGACTAA
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