mRNA_P-littoralis_Contig1183.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1183.9.1
Unique NamemRNA_P-littoralis_Contig1183.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1183.9.1 vs. uniprot
Match: A0A6H5KIH2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIH2_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.580e-13
Identity = 43/82 (52.44%), Postives = 51/82 (62.20%), Query Frame = 1 
Query:    1 EFTKGPSLWFDANEVPDTQLPSGETRQPLVQQFHAAMYKDS---ESPT-PTWEETEYFDRGWGQRTAEGPDA----AAPASG 222
            EFTKGPSLWF  NEV D  LPSGET Q ++  FH AMY +S   ++P+ P W++ EYF    G     GP A    AAPASG
Sbjct:   17 EFTKGPSLWFSKNEVQDVDLPSGETEQRVMDDFHLAMYMESMGVKAPSKPDWQKVEYFAARAGSSGRGGPGAGAGGAAPASG 98
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1183.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KIH2_9PHAE1.580e-1352.44Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1183contigP-littoralis_Contig1183:41590..42552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size245
Hectar predicted targeting categoryother localisation
Exons2
Cds size243
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789497.0070236-CDS-P-littoralis_Contig1183:41591..417991680789497.0070236-CDS-P-littoralis_Contig1183:41591..41799Pylaiella littoralis U1_48CDSP-littoralis_Contig1183 41592..41799 -
1680789497.017301-CDS-P-littoralis_Contig1183:42517..425521680789497.017301-CDS-P-littoralis_Contig1183:42517..42552Pylaiella littoralis U1_48CDSP-littoralis_Contig1183 42518..42552 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1183.9.1prot_P-littoralis_Contig1183.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1183 41592..42552 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1183.9.1

>prot_P-littoralis_Contig1183.9.1 ID=prot_P-littoralis_Contig1183.9.1|Name=mRNA_P-littoralis_Contig1183.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=81bp
EFTKGPSLWFDANEVPDTQLPSGETRQPLVQQFHAAMYKDSESPTPTWEE
TEYFDRGWGQRTAEGPDAAAPASGAGTGAGT
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mRNA from alignment at P-littoralis_Contig1183:41590..42552-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1183.9.1 ID=mRNA_P-littoralis_Contig1183.9.1|Name=mRNA_P-littoralis_Contig1183.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=963bp|location=Sequence derived from alignment at P-littoralis_Contig1183:41590..42552- (Pylaiella littoralis U1_48)
GAGTTCACCAAGGGGCCTTCGCTCTGGTTCGACGCGTGAGTTGCTTGGTT
ATGTAGCAAGCAGGCGTTATAGGTCCACCCCCGCCCCTGCAGACCCCTCG
CCCTGACTGGTTATCTTTCCCGATACTTCGTTGCTGCTGGTTGTCGGTAA
TAGATGCTGATGTTGTGTGGTAGTCCATCGTGTGTGCGATACTGTGCTGT
GCACACCCCAATCAGGAAGCAACCATTACACACGTGGACGAGGGTGATGC
GAGTGCGTACGACAGTGTCCGGGCGTGTGTTTTGTGTGCTGTCCTGACCC
CGATCAGGAAGAAGGATCATGTGGTCAAAAATCGTGTGGTCGAGAACTGC
GTTTGGTTCACCGTAGAAGTGTATCCATGGCGTGTGAAGCTTACGTGCTG
TTCGTTTCATCACATCCCGGAGAAAACAAGTACCATCAGGCATGCGTGTA
CATGTACAAAGCCATGCCATAAAATATCATATGCGCGAGGGTTCGCATGC
GAACACATGGACGCGAGGGCTGTGCTGCTGATGTCTTACCCTGAAAGGAG
CTGGTTGTACGTGTTGCGTGTTGTTTTTTTCCACACACACCGTGTTTGTT
GATTTCGCCTCTATCGGAGAATCTTGTTGAGTCTGAGGATGGTTGGTCTT
CCGTGAAAAGCCATTGTGTCTCTTGGGAACTATTTTCACGTGCACAGTAG
ACCACGATCTGAACAAGTGACACATTGTGCCCCTCGCGTATTCTTGTGAA
CAGGAACGAGGTGCCGGATACGCAGTTGCCTTCCGGTGAAACCCGTCAGC
CACTTGTGCAACAGTTTCATGCCGCGATGTACAAGGACTCCGAGAGCCCC
ACCCCCACCTGGGAGGAGACCGAGTATTTTGACCGGGGGTGGGGGCAGCG
GACCGCGGAGGGACCCGACGCCGCGGCCCCGGCTTCTGGTGCTGGGACTG
GCGCCGGGACGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1183:41590..42552-

>mRNA_P-littoralis_Contig1183.9.1 ID=mRNA_P-littoralis_Contig1183.9.1|Name=mRNA_P-littoralis_Contig1183.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=243bp|location=Sequence derived from alignment at P-littoralis_Contig1183:41590..42552- (Pylaiella littoralis U1_48)
GAGTTCACCAAGGGGCCTTCGCTCTGGTTCGACGCGAACGAGGTGCCGGA
TACGCAGTTGCCTTCCGGTGAAACCCGTCAGCCACTTGTGCAACAGTTTC
ATGCCGCGATGTACAAGGACTCCGAGAGCCCCACCCCCACCTGGGAGGAG
ACCGAGTATTTTGACCGGGGGTGGGGGCAGCGGACCGCGGAGGGACCCGA
CGCCGCGGCCCCGGCTTCTGGTGCTGGGACTGGCGCCGGGACG
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