mRNA_P-littoralis_Contig729.30.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig729.30.1
Unique NamemRNA_P-littoralis_Contig729.30.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig729.30.1 vs. uniprot
Match: D8LL58_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL58_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 5.170e-13
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 FRFQCKFAEAEALYERCQAIFEKVLGPEHPSLATTLHGQAGLLQK 135
            F  Q KFAEAE LY+RCQAI E+ LGPEHPS+ATTLHG+AGL+ K
Sbjct:  651 FELQGKFAEAEELYDRCQAINEEALGPEHPSVATTLHGRAGLMVK 695
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BLAST of mRNA_P-littoralis_Contig729.30.1 vs. uniprot
Match: A0A6H5KHN5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN5_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.050e-10
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:   16 KFAEAEALYERCQAIFEKVLGPEHPSLATTLHGQAGLLQ 132
            K+AEAEALY +CQAI EKVLGPEHPSLATTLH  A LL+
Sbjct: 1766 KYAEAEALYAQCQAIEEKVLGPEHPSLATTLHNLADLLR 1804
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BLAST of mRNA_P-littoralis_Contig729.30.1 vs. uniprot
Match: A0A6H5K5H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H9_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.670e-10
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:   10 QCKFAEAEALYERCQAIFEKVLGPEHPSLATTLHGQAGLLQKQVRRS 150
            Q K+AEAE LYER QAIFE  LGPEHP++AT L+ +AGLL+ Q R++
Sbjct:   30 QGKYAEAEPLYERWQAIFETALGPEHPNVATALNNRAGLLEDQRRQT 76
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BLAST of mRNA_P-littoralis_Contig729.30.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 3.650e-10
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 FRFQCKFAEAEALYERCQAIFEKVLGPEHPSLATTLHGQAGLLQKQVR 144
            F  Q K+AEAE LYER QAI E VLGPEHP + T+L+ +A LL+KQVR
Sbjct:  657 FNIQGKYAEAEPLYERSQAIQENVLGPEHPDVGTSLNNRALLLEKQVR 704
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BLAST of mRNA_P-littoralis_Contig729.30.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 3.660e-10
Identity = 28/41 (68.29%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   16 KFAEAEALYERCQAIFEKVLGPEHPSLATTLHGQAGLLQKQ 138
            K+ +AE LYERCQAI+EK LGPEHP +ATTL+ +AGLL+ Q
Sbjct:  942 KYTDAEPLYERCQAIYEKRLGPEHPYVATTLNNRAGLLEAQ 982
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BLAST of mRNA_P-littoralis_Contig729.30.1 vs. uniprot
Match: D7FXH0_ECTSI (Tetratricopeptide repeat containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH0_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.750e-9
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:   10 QCKFAEAEALYERCQAIFEKVLGPEHPSLATTLH 111
            Q K+AEAEALY RCQAI EKVLGPEHPSLA+TLH
Sbjct:  339 QGKYAEAEALYVRCQAIEEKVLGPEHPSLASTLH 372
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BLAST of mRNA_P-littoralis_Contig729.30.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 2.920e-8
Identity = 28/45 (62.22%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 FRFQCKFAEAEALYERCQAIFEKVLGPEHPSLATTLHGQAGLLQK 135
            F  Q K+AEAE LYER  AI EKVLGPEHP +AT+L  +A LL++
Sbjct:  690 FNIQGKYAEAEPLYERSLAIQEKVLGPEHPDVATSLDNRASLLER 734
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BLAST of mRNA_P-littoralis_Contig729.30.1 vs. uniprot
Match: A0A6H5JUC1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC1_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 3.970e-8
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   10 QCKFAEAEALYERCQAIFEKVLGPEHPSLATTLHGQAGLLQKQ 138
            Q K++EAE LY+RCQA+  K LGPEHPSLA TL+ +A LL+ Q
Sbjct:  186 QGKYSEAEPLYDRCQAMKGKALGPEHPSLAATLNNRAELLRAQ 228
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BLAST of mRNA_P-littoralis_Contig729.30.1 vs. uniprot
Match: A0A6H5K3K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K8_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 6.080e-8
Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 FRFQCKFAEAEALYERCQAIFEKVLGPEHPSLATTLHGQAGLLQKQV 141
            F  Q K+ EAE LYER QAI EKVLG EHP +A++L+ +  LL+ QV
Sbjct:   15 FDIQGKYMEAEPLYERSQAIQEKVLGLEHPDVASSLNNRVELLRAQV 61
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BLAST of mRNA_P-littoralis_Contig729.30.1 vs. uniprot
Match: A0A6H5KMK1_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK1_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 4.700e-7
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   10 QCKFAEAEALYERCQAIFEKVLGPEHPSLATTLHGQAGLLQKQ 138
            Q K+ EAE LYER QAI EKVLG EHP +AT+L+ +A LL KQ
Sbjct:   14 QGKYTEAEPLYERSQAIREKVLGSEHPRVATSLNDRAKLLCKQ 56
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig729.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LL58_ECTSI5.170e-1373.33NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KHN5_9PHAE1.050e-1079.49CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K5H9_9PHAE1.670e-1063.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXS7_9PHAE3.650e-1064.58NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JJK0_9PHAE3.660e-1068.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXH0_ECTSI1.750e-985.29Tetratricopeptide repeat containing protein n=1 Ta... [more]
D7G722_ECTSI2.920e-862.22NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5JUC1_9PHAE3.970e-862.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K3K8_9PHAE6.080e-857.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMK1_9PHAE4.700e-765.12Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig729contigP-littoralis_Contig729:131157..131312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LL58
PFAMsNB-ARC,TPR_10,TPR_12,TPR_16,TPR_4,TPR_7,TPR_8
Model size156
Max annot lvl2759|Eukaryota
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue8.48e-14
EggNOG OGsCOG0457@1|root,KOG4658@1|root,KOG1840@2759|Eukaryota,KOG4658@2759|Eukaryota
DescriptionADP binding
Cds size156
COG categoryS
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791510.7770581-CDS-P-littoralis_Contig729:131156..1313121680791510.7770581-CDS-P-littoralis_Contig729:131156..131312Pylaiella littoralis U1_48CDSP-littoralis_Contig729 131157..131312 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig729.30.1prot_P-littoralis_Contig729.30.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig729 131157..131312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig729.30.1

>prot_P-littoralis_Contig729.30.1 ID=prot_P-littoralis_Contig729.30.1|Name=mRNA_P-littoralis_Contig729.30.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=52bp
FRFQCKFAEAEALYERCQAIFEKVLGPEHPSLATTLHGQAGLLQKQVRRS
E*
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mRNA from alignment at P-littoralis_Contig729:131157..131312-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig729.30.1 ID=mRNA_P-littoralis_Contig729.30.1|Name=mRNA_P-littoralis_Contig729.30.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=156bp|location=Sequence derived from alignment at P-littoralis_Contig729:131157..131312- (Pylaiella littoralis U1_48)
TTCCGCTTCCAGTGCAAGTTTGCTGAGGCGGAGGCACTGTATGAGCGGTG
TCAGGCGATCTTCGAGAAGGTGCTGGGCCCGGAGCACCCAAGCTTGGCCA
CGACGCTCCACGGCCAGGCTGGATTGTTGCAAAAACAGGTGAGACGATCT
GAATAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig729:131157..131312-

>mRNA_P-littoralis_Contig729.30.1 ID=mRNA_P-littoralis_Contig729.30.1|Name=mRNA_P-littoralis_Contig729.30.1|organism=Pylaiella littoralis U1_48|type=CDS|length=156bp|location=Sequence derived from alignment at P-littoralis_Contig729:131157..131312- (Pylaiella littoralis U1_48)
TTCCGCTTCCAGTGCAAGTTTGCTGAGGCGGAGGCACTGTATGAGCGGTG
TCAGGCGATCTTCGAGAAGGTGCTGGGCCCGGAGCACCCAAGCTTGGCCA
CGACGCTCCACGGCCAGGCTGGATTGTTGCAAAAACAGGTGAGACGATCT
GAATAA
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