mRNA_P-littoralis_Contig729.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig729.15.1
Unique NamemRNA_P-littoralis_Contig729.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig729.15.1 vs. uniprot
Match: A0A6H5KG54_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG54_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 5.520e-6
Identity = 32/83 (38.55%), Postives = 46/83 (55.42%), Query Frame = 3 
Query:   93 GKEIQEIVFEAGGLPVQDHLHLASCSNYPHHNIVKL*PQPRPRRAVSSVEEDVLPLSVVESRMDDLRRWAPADIKAPGIFKLL 341
            GK+ +E   +  G P +  ++  S +  P      L     PR AVS  +E VLPLS ++ RMDD+R+W  A++ A  IFKLL
Sbjct:  147 GKKNRERRSQRVGCPFKVGIYWRSGTLTPAVTQADLRHNHDPRGAVSKAQEKVLPLSFIDDRMDDIRKWTAANLGAQEIFKLL 229
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BLAST of mRNA_P-littoralis_Contig729.15.1 vs. uniprot
Match: A0A6H5JGK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK0_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 5.570e-6
Identity = 32/83 (38.55%), Postives = 46/83 (55.42%), Query Frame = 3 
Query:   93 GKEIQEIVFEAGGLPVQDHLHLASCSNYPHHNIVKL*PQPRPRRAVSSVEEDVLPLSVVESRMDDLRRWAPADIKAPGIFKLL 341
            GK+ +E   +  G P +  ++  S +  P      L     PR AVS  +E VLPLS ++ RMDD+R+W  A++ A  IFKLL
Sbjct:  845 GKKNRERRSQRVGCPFKVGIYWRSGTLTPAVTQADLRHNHDPRGAVSKAQEKVLPLSFIDDRMDDIRKWTAANLGAQEIFKLL 927
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig729.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KG54_9PHAE5.520e-638.55SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JGK0_9PHAE5.570e-638.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig729contigP-littoralis_Contig729:33159..33990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size351
Hectar predicted targeting categoryother localisation
Exons3
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791510.6384356-CDS-P-littoralis_Contig729:33158..332841680791510.6384356-CDS-P-littoralis_Contig729:33158..33284Pylaiella littoralis U1_48CDSP-littoralis_Contig729 33159..33284 +
1680791510.6531508-CDS-P-littoralis_Contig729:33439..335051680791510.6531508-CDS-P-littoralis_Contig729:33439..33505Pylaiella littoralis U1_48CDSP-littoralis_Contig729 33440..33505 +
1680791510.6664424-CDS-P-littoralis_Contig729:33832..339881680791510.6664424-CDS-P-littoralis_Contig729:33832..33988Pylaiella littoralis U1_48CDSP-littoralis_Contig729 33833..33988 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig729.15.1prot_P-littoralis_Contig729.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig729 33159..33988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig729.15.1

>prot_P-littoralis_Contig729.15.1 ID=prot_P-littoralis_Contig729.15.1|Name=mRNA_P-littoralis_Contig729.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=116bp
YVQTADKRRYRHREIVCKHRGKPRKGAPGSTEKKSRKSSSKQVGCPFKII
FTWPVAATTPTITSSNCDHNHDPAEPSQASKRTCFRFRSSKAGWMTYGGG
PRRTSKRQGSSNCSGW
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mRNA from alignment at P-littoralis_Contig729:33159..33990+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig729.15.1 ID=mRNA_P-littoralis_Contig729.15.1|Name=mRNA_P-littoralis_Contig729.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=832bp|location=Sequence derived from alignment at P-littoralis_Contig729:33159..33990+ (Pylaiella littoralis U1_48)
TATGTGCAGACGGCGGACAAGAGGAGATACAGGCATCGAGAAATCGTTTG
CAAGCACAGGGGGAAGCCGCGGAAGGGTGCACCGGGAAGCACGGAAAAGA
AATCCAGGAAATCGTCTTCGAAGCAGGTGGGTTGTACGAAGAAGCTGTAG
ACTCTCGGCAGCGAATCCTACGCGTATGGATGCGAGATTCACACGGACTG
AATGTGCATGGGAGCAATGTGCTTTGGAAAGGGAACAAGCTCAACAATCG
GGGGTCTTACCCTCCCAGGTTTGCTGTGCAGGTGGGCTGCCCGTTCAAGA
TCATCTTCACTTGGCCAGTTGCAGCAACTACCCCCACCATAACATCGGTG
AGTTACCAGCCAGTATGGATGTCTGCTCGGAGTGGTGACGCTGTTTTGTT
TCTCTTCTCCGCGCCTTTTTTTGATATTTTGTCATCGGTTATTGTGCGTT
TCTTTCCGGCCGCTCGATTTCGTTTCTTCGCCCCCGTTTTTCCCCACACA
AACAGTGTTGCTGTTGGCGCACGAAGCGGGTGCCACCTTCACACATACCA
ACCCTGCAAGAAGTTTTGCTACAACCTGACGCACGTACCACACGTATTCG
TAAATGTTTCTCTGTCCGTTTTATGTTCGCTTCCTCTTCGTGGTTGATTC
ATGTTCGCCCGCCTGTTTCGCAAGTCAAACTGTGACCACAACCACGACCC
CGCAGAGCCGTCTCAAGCGTCGAAGAGGACGTGCTTCCGCTTTCGGTCGT
CGAAAGCAGGATGGATGACCTACGGAGGTGGGCCCCGGCGGACATCAAAG
CGCCAGGGATCTTCAAATTGCTCGGGATGGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig729:33159..33990+

>mRNA_P-littoralis_Contig729.15.1 ID=mRNA_P-littoralis_Contig729.15.1|Name=mRNA_P-littoralis_Contig729.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig729:33159..33990+ (Pylaiella littoralis U1_48)
TATGTGCAGACGGCGGACAAGAGGAGATACAGGCATCGAGAAATCGTTTG
CAAGCACAGGGGGAAGCCGCGGAAGGGTGCACCGGGAAGCACGGAAAAGA
AATCCAGGAAATCGTCTTCGAAGCAGGTGGGCTGCCCGTTCAAGATCATC
TTCACTTGGCCAGTTGCAGCAACTACCCCCACCATAACATCGTCAAACTG
TGACCACAACCACGACCCCGCAGAGCCGTCTCAAGCGTCGAAGAGGACGT
GCTTCCGCTTTCGGTCGTCGAAAGCAGGATGGATGACCTACGGAGGTGGG
CCCCGGCGGACATCAAAGCGCCAGGGATCTTCAAATTGCTCGGGATGG
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