mRNA_P-littoralis_Contig729.1.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig729.1.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE) HSP 1 Score: 167 bits (424), Expect = 1.350e-44 Identity = 84/124 (67.74%), Postives = 97/124 (78.23%), Query Frame = 2
Query: 449 QDTQGARDEAECLVSKCLLQDMGGGGHRVHDLVLEFVTSRIKADVEVAEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDSELEVRSYRTSLRESESCGATFHTAEFY 820
+D +G R+EAE LVSKCLLQ +GG G+RVHDLVLEFV + I+A+ E+ E+A LQAQYL R DV++ Y +PEHGAG QGLFFLDALWRSVEKLSGD ELEV SYR SL E ESC AT A Y
Sbjct: 301 EDAEGTREEAEGLVSKCLLQAVGGSGYRVHDLVLEFVKTSIRAEEEMVEKATALQAQYLGRVDVLKSYGDPEHGAGNQGLFFLDALWRSVEKLSGDPELEVASYRASLGELESCEATEDVASSY 424
BLAST of mRNA_P-littoralis_Contig729.1.1 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI) HSP 1 Score: 166 bits (419), Expect = 1.080e-42 Identity = 81/125 (64.80%), Postives = 98/125 (78.40%), Query Frame = 2
Query: 449 QDTQGARDEAECLVSKCLLQDMGGGGHRVHDLVLEFVTSRIKADVEVAEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDSELEVRSYRTSLRESESCGATFHTAEFYS 823
+D +G RDEAE LV+KCLL +G GG+RVHD+VLEF + I+AD E E+A LQAQ+L R DV++ YR+PEHGAG++GLFFLD+LWRSVEKLSGD ELEV +YR SLRE ESC AT A YS
Sbjct: 518 EDAEGTRDEAEGLVNKCLLHAVGDGGYRVHDMVLEFAKTSIRADEETVEKATALQAQFLGRLDVLKSYRDPEHGAGDRGLFFLDSLWRSVEKLSGDPELEVTTYRASLRELESCKATEDMASSYS 642
BLAST of mRNA_P-littoralis_Contig729.1.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI) HSP 1 Score: 165 bits (418), Expect = 1.360e-42 Identity = 83/124 (66.94%), Postives = 95/124 (76.61%), Query Frame = 2
Query: 449 QDTQGARDEAECLVSKCLLQDMGGGGHRVHDLVLEFVTSRIKADVEVAEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDSELEVRSYRTSLRESESCGATFHTAEFY 820
+D +G RD+AE LVSKCLL +GGGG+RVHDLVLEF + I+A+ E ++A LQAQYL R DV+EGY +PEHGAG QGLFFLDALWRSVEKLSGD ELEV SY SL E ESC AT A Y
Sbjct: 560 EDAEGTRDDAEGLVSKCLLHAVGGGGYRVHDLVLEFAKTSIRAEEETVKKATALQAQYLGRLDVLEGYGDPEHGAGGQGLFFLDALWRSVEKLSGDPELEVASYHNSLGELESCEATKAVARSY 683
BLAST of mRNA_P-littoralis_Contig729.1.1 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE) HSP 1 Score: 162 bits (411), Expect = 1.140e-41 Identity = 81/126 (64.29%), Postives = 100/126 (79.37%), Query Frame = 2
Query: 446 SQDTQGARDEAECLVSKCLLQDMGGGGHRVHDLVLEFVTSRIKADVEVAEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDSELEVRSYRTSLRESESCGATFHTAEFYS 823
++DT G R++AE LVSKCLLQD+GGGG+RVHDLVL+FV +IKAD+E+A++ LQAQ+L R +V++ Y +PEHGAG QGLF LDALWRSVE+LSGD +LEV SY TSL ESC AT A YS
Sbjct: 436 TEDTGGTREDAEGLVSKCLLQDVGGGGYRVHDLVLDFVKIKIKADMEMAKKIAALQAQFLGRLNVLKSYEHPEHGAGNQGLFVLDALWRSVEQLSGDPKLEVPSYSTSLAALESCEATTVVASSYS 561
BLAST of mRNA_P-littoralis_Contig729.1.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI) HSP 1 Score: 162 bits (411), Expect = 1.210e-41 Identity = 81/124 (65.32%), Postives = 94/124 (75.81%), Query Frame = 2
Query: 449 QDTQGARDEAECLVSKCLLQDMGGGGHRVHDLVLEFVTSRIKADVEVAEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDSELEVRSYRTSLRESESCGATFHTAEFY 820
+D +G RD+AE LVSKCLL +GGGG+RVHDLVLEF + I+A+ E ++A LQAQYL R DV+E Y +PEHG G+QGLFFLDALWRSVEKLSGD LEV SYR SL E ESC AT A Y
Sbjct: 543 EDAEGTRDDAEGLVSKCLLHAVGGGGYRVHDLVLEFAKTSIRAEEETVKKATALQAQYLGRLDVLESYGDPEHGTGDQGLFFLDALWRSVEKLSGDPGLEVASYRASLEELESCEATEAVATSY 666
BLAST of mRNA_P-littoralis_Contig729.1.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE) HSP 1 Score: 147 bits (371), Expect = 1.490e-36 Identity = 75/124 (60.48%), Postives = 88/124 (70.97%), Query Frame = 2
Query: 449 QDTQGARDEAECLVSKCLLQDMGGGGHRVHDLVLEFVTSRIKADVEVAEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDSELEVRSYRTSLRESESCGATFHTAEFY 820
+D +G RDEAE LVSKCLL +GGGG+RVHDLVLE+ +RI+AD E+ + LQA +L R DV++ YR+PEHGAG Q LFFLDALWRSVEKLSGD ELEV ESC AT A Y
Sbjct: 535 EDAEGTRDEAEGLVSKCLLHAVGGGGYRVHDLVLEYAKTRIRADAEMVRKVTALQAHFLGRLDVLKSYRDPEHGAGNQSLFFLDALWRSVEKLSGDPELEVAL--------ESCEATEAVARSY 650
BLAST of mRNA_P-littoralis_Contig729.1.1 vs. uniprot
Match: D7FUD7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD7_ECTSI) HSP 1 Score: 145 bits (366), Expect = 1.190e-35 Identity = 75/124 (60.48%), Postives = 89/124 (71.77%), Query Frame = 2
Query: 449 QDTQGARDEAECLVSKCLLQDMGGGGHRVHDLVLEFVTSRIKADVEVAEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDSELEVRSYRTSLRESESCGATFHTAEFY 820
+D +G EAE LVSK LL +GGGG+R+HDLVL+F + I+A+ E + A LQAQYL R DVVE Y +PEHGAG+QG+FFLDALWRSVEKLSGD +LEV SYR SL E AT A Y
Sbjct: 344 EDAEGTHAEAEGLVSKYLLHAVGGGGYRMHDLVLDFAKTSIRAEEETVKRATALQAQYLGRLDVVESYGDPEHGAGDQGIFFLDALWRSVEKLSGDPQLEVASYRASLGALEWGEATEAAARSY 467
BLAST of mRNA_P-littoralis_Contig729.1.1 vs. uniprot
Match: A0A6H5KFQ0_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ0_9PHAE) HSP 1 Score: 118 bits (295), Expect = 7.360e-27 Identity = 64/99 (64.65%), Postives = 76/99 (76.77%), Query Frame = 3
Query: 3 VIELCGRLPLVLAIAGSMPVVKGKGLTADAWRQLTKDLENVAKKMRISGEQLTSLSVVLETSFVALAQERQEELLKMAVLAAGAVAPIEMLRNLWQTEV 299
V+ CGR PL L +A SMP+VKGKGLTA AW +L K+LENVAKKMR GEQ TSL +V+ETSF AL ++EE M+V+AAGAVAPIEML NLW +V
Sbjct: 322 VVTRCGRPPLGLGMAVSMPIVKGKGLTAGAWTKLFKELENVAKKMRARGEQSTSLKLVIETSFDALLARKREE---MSVMAAGAVAPIEMLLNLWGIQV 417
BLAST of mRNA_P-littoralis_Contig729.1.1 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI) HSP 1 Score: 115 bits (288), Expect = 2.570e-25 Identity = 60/98 (61.22%), Postives = 73/98 (74.49%), Query Frame = 3
Query: 3 VIELCGRLPLVLAIAGSMPVVKGKGLTADAWRQLTKDLENVAKKMRISGEQLTSLSVVLETSFVALAQERQEELLKMAVLAAGAVAPIEMLRNLWQTE 296
V++ CGRLPLVLAIAGSMPVVKGKGL AW +L ++ ENV M GE+ +L +VL SF ALA ++EE L+MAVLA GAVAP EMLRNLW+ +
Sbjct: 440 VVDRCGRLPLVLAIAGSMPVVKGKGLKDGAWEELIEEFENVTTIMWEPGEESRNLDMVLGASFNALAARKREEFLRMAVLAPGAVAPFEMLRNLWEIQ 537
BLAST of mRNA_P-littoralis_Contig729.1.1 vs. uniprot
Match: A0A6H5JY23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY23_9PHAE) HSP 1 Score: 101 bits (252), Expect = 1.960e-23 Identity = 52/79 (65.82%), Postives = 57/79 (72.15%), Query Frame = 2
Query: 587 VAEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDSELEVRSYRTSLRESESCGATFHTAEFYS 823
+ E+A LQA +L DV++ Y NPEHGA QGLF LDALWRSVEKLSGDSELEV SY TSL E ESC AT A YS
Sbjct: 1 MVEKATTLQAHFLGTLDVLKDYENPEHGADNQGLFVLDALWRSVEKLSGDSELEVASYSTSLGELESCKATTDVASSYS 79 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig729.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig729.1.1 >prot_P-littoralis_Contig729.1.1 ID=prot_P-littoralis_Contig729.1.1|Name=mRNA_P-littoralis_Contig729.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=128bp MISQDTQGARDEAECLVSKCLLQDMGGGGHRVHDLVLEFVTSRIKADVEVback to top mRNA from alignment at P-littoralis_Contig729:4394..5216- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig729.1.1 ID=mRNA_P-littoralis_Contig729.1.1|Name=mRNA_P-littoralis_Contig729.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=823bp|location=Sequence derived from alignment at P-littoralis_Contig729:4394..5216- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig729:4394..5216- >mRNA_P-littoralis_Contig729.1.1 ID=mRNA_P-littoralis_Contig729.1.1|Name=mRNA_P-littoralis_Contig729.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=384bp|location=Sequence derived from alignment at P-littoralis_Contig729:4394..5216- (Pylaiella littoralis U1_48)back to top |