mRNA_P-littoralis_Contig729.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig729.24.1
Unique NamemRNA_P-littoralis_Contig729.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig729.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig729contigP-littoralis_Contig729:86778..89587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size261
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size174
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791510.3619416-UTR-P-littoralis_Contig729:86777..868001680791510.3619416-UTR-P-littoralis_Contig729:86777..86800Pylaiella littoralis U1_48UTRP-littoralis_Contig729 86778..86800 +
1680791510.3996189-UTR-P-littoralis_Contig729:89523..895871680791510.3996189-UTR-P-littoralis_Contig729:89523..89587Pylaiella littoralis U1_48UTRP-littoralis_Contig729 89524..89587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791510.3758185-CDS-P-littoralis_Contig729:86800..869181680791510.3758185-CDS-P-littoralis_Contig729:86800..86918Pylaiella littoralis U1_48CDSP-littoralis_Contig729 86801..86918 +
1680791510.3874774-CDS-P-littoralis_Contig729:89467..895231680791510.3874774-CDS-P-littoralis_Contig729:89467..89523Pylaiella littoralis U1_48CDSP-littoralis_Contig729 89468..89523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig729.24.1prot_P-littoralis_Contig729.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig729 86801..89523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig729.24.1

>prot_P-littoralis_Contig729.24.1 ID=prot_P-littoralis_Contig729.24.1|Name=mRNA_P-littoralis_Contig729.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=58bp
MSESQALLYYAAPWPQEGEFITEYQPRPSCSSSVMLIIKGRKIRTFVIRG
HNSSVPE*
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mRNA from alignment at P-littoralis_Contig729:86778..89587+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig729.24.1 ID=mRNA_P-littoralis_Contig729.24.1|Name=mRNA_P-littoralis_Contig729.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2810bp|location=Sequence derived from alignment at P-littoralis_Contig729:86778..89587+ (Pylaiella littoralis U1_48)
TGCTGCTGCTGTAGTTGTTTTGGATGAGCGAATCCCAAGCGTTGCTATAT
TATGCGGCGCCATGGCCACAGGAAGGAGAGTTCATAACCGAGTACCAACC
ACGTCCGTCATGCTCTAGCAGCGTTATGCTCATCATCAAAGGTGGGGCTG
AGAGCTAGACACAAGAGATTGGAAAACAACTACCGGTATCTATCTAGTTT
TACCCTGCGTTGATCTCGCTATGATGGCTGTGTGTGGCAGATGTGAGGAT
CGATACTACGACGGTGACCAGCTAGAGGGGAACGGTGATCCTTGCAGAGT
CATCCACGAGACCTTTCAAGGGAGATGCATAATTAGCTGGAGACTTTTTT
TGTTGACTTCGAACGAGCTTTCGAACAGCAGACGTGCGGTGCCTGTCGGG
CGCGGTTTGCTGTCTGTCTGGTTCATGACGTCGATACTGCATCTTTCGCC
ATTTCCCCATGTCTTGGGTCAAAAAAGAATCAATCTCGTTCTGCGCACGA
CGGAAAGACTTCAAATCGTACCAAGATACAGAAGCAGGATCACCTTGAAG
CGTTATTTGCTCATATTTGAAAAACCGGTGCCGGCTACATTTCCCGGAAT
ATGAGGAAAAAAGATAATCTGGAGTGTGTGTGTTGTGTGTGTGTGTTGTC
ATCCCTTTCACTGGACGCCACTCTACACCTTTCGGGTAGGTAGACGTTCC
AACCGGGGTCACACAGGGGAAGTCAACACAGGAGTTTTTTTTTTTTTTTT
GCTCCACTTCCCTCTGCCGTGCTTGCCTTTTTGGTTGAGTTCTTATCGCG
AGAAAGAGGACAGCGATCCCTTTCCGTCGTCGATGGTACGATCGAATTGA
GTATGAGCCAAAAACATGAGCAAACGAAACCACTTCCGAAATTGTCTAGT
GGCATTGCACGGTAATGTGGTGGATGTAGTGGCGGGCATTTGGGGTACAC
AGCATTGCGTCACGCAATCGTTCGTTGTCATTTCGTGCTTCGTGCTTCCG
CGCTGTTGTGCGCGCAAGTTGTTGACAAGAGTTTTTACGTACGAGAATTT
ACAGCAGAAGGTGAGGTGTTATCAGAGAAAGAAGAGTCCAATCGGCGACA
CGCCGCGCAGGTCAAGTCACGAACGGGATTCCACGGGGTTAGAGCACATC
CTCCATCGCAAACATGTTACCCTCCCCGTGTATGCCTGACGGCTGTGCAT
CACGTCCGATATGATTCTCATCAGCTGATCGTGGTGATAAGATTCCGGTG
GCTCAACAATTTCCCGAGGGGGGTCGGAGGGTTCCCGCTGCTCCGCAAAA
TCTCACCTCTCACCTCGATGTTGCAGTCACGGGGTATGACACAACGGAGT
GGGGGGAGGAAAGCAATGTCGAAGCGCTATGGATCTGAACCGTGTTGTTC
ATTGATTTCGCGCCGTTCTTTTCCACACGTTGTCGGGTCGCTTTGTGCCA
GAGTGGGCGTAGAGGAGCTTGGGGCTCGCTGTGACTCACCATGCGCATGC
GTCCCTCGGCTTGCAAAGAAAATACTCGGAGTACGGAGTAATTGAATTTT
TCGAGGAATGGTTCTGGGGTTCTTCAGAATACTGCACCTGCGGACTGCGC
GGCGACTCTTCAACAGCAGTCCCGCCAACATGCGTCATGTGTTGAAGGCC
AGCGAAAATACTCCGAAATAAACTTCTTGATACATTAAAGCTTCCAGCGG
GAAACCGGGGATGTGTGGAAGCCCTGGTACAATGCGGAGATTCCTAACAC
CCACCTCGCGTCACAGCACCGGTGGCTAGAGAGCGGGACAAGGGCGAGGC
AGGATTCCAGTGACGGAGATGTGTTGCATGGCTATGAGTGCATTGCGCGA
CGACGTTTTTCTGGTCGATTACGTTCGGTATGAGTAAAAATTACAGATTT
TAGACGAAGCGGTTCACCCCAGAGCATCCCTGAAAATGAGGAGGGAGGTC
ACCATGCATGCTCTAGTCTACCTAAGACTAGCATGTGAGGACCCAATGTT
GCTTGTGTCATGTCGTAGTCTACTCTTGCCACCTATTACAAAAAGTTTCG
CTCGATTTGCTTCGTCCTGGACTAAGCATGACTATTTCAAAATTCAAAAT
TCTTGCCAGGCTCGCGTACGTGCTGCAAAGAAAGCCACGCCGTATCATAT
GAACGTCGAGAACCGCTGTGTACCCCACTACAACCACGACGTACAATGAC
TGCTGCAACTAACATATCAGTAGTGATTTCAGTTGTTGTTGTCAGCTGTA
GGATGGAATAATATATGATCAGTAGCTTCGTGACATGGATGAATAATTGT
ACCATGTCGTATACTGCTGTAGTTTATGTAAATTGGAAGTCGATGAAATA
AAAAATTCGGATACCGACTGAAAAACGCATGCGCCCATGCCATCCTTTTG
GTCTTCCTTTGTGCACCACCTGCAGCAATCGAACGAATCAAGGTCGACAC
CCATGATATAGCCTATCTTTAGAGGGAATGACTCAAAATAATACAGGAGT
TGTATTGAAAGAAAAAAAACACAGTGCTCTCGTTGAAATTCCTTGCTGCA
ATGTCGTGAAGATCAGCCAAGAATATGTTGCGATACAGCGGGAAAAATAA
ATACATACCAGGTACTACTGGCGCGAGCCCGTGCGTGCGTAAATCGGTTT
GCCTTTGTCCGATGCACCGTCGCCACAATTTATTTTTCAGGGAGAAAAAT
ACGAACTTTCGTCATTCGCGGGCACAACAGCAGTGTCCCCGAATAACGCG
CCGCAGAGCGCGACGGGGGGATAGTGTTCGGGAGGTCCTACCAACGTCGA
GGCCGACGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig729:86778..89587+

>mRNA_P-littoralis_Contig729.24.1 ID=mRNA_P-littoralis_Contig729.24.1|Name=mRNA_P-littoralis_Contig729.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=174bp|location=Sequence derived from alignment at P-littoralis_Contig729:86778..89587+ (Pylaiella littoralis U1_48)
ATGAGCGAATCCCAAGCGTTGCTATATTATGCGGCGCCATGGCCACAGGA
AGGAGAGTTCATAACCGAGTACCAACCACGTCCGTCATGCTCTAGCAGCG
TTATGCTCATCATCAAAGGGAGAAAAATACGAACTTTCGTCATTCGCGGG
CACAACAGCAGTGTCCCCGAATAA
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