mRNA_P-littoralis_Contig1183.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1183.8.1
Unique NamemRNA_P-littoralis_Contig1183.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1183.8.1 vs. uniprot
Match: A0A6H5K8W9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W9_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 3.900e-16
Identity = 53/75 (70.67%), Postives = 58/75 (77.33%), Query Frame = 3 
Query:    3 ASKAAMDRACPNGDPVSRRKAAAYREAQDKKAAKXXXXXXXXXXXXXXXXXKRKRLEVLKEATAGMTNVAASLAK 227
            ASK A+DRACPNGDPVSRRKAAA+R  Q+KKAA+ XXXXXXXX        KRKRL+VL  AT GMT VA SLAK
Sbjct:   44 ASKPALDRACPNGDPVSRRKAAAFRAEQEKKAARAXXXXXXXXRASEEVENKRKRLQVLTAATEGMTGVATSLAK 118
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BLAST of mRNA_P-littoralis_Contig1183.8.1 vs. uniprot
Match: A0A6H5KIH2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIH2_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 3.690e-15
Identity = 53/75 (70.67%), Postives = 58/75 (77.33%), Query Frame = 3 
Query:    3 ASKAAMDRACPNGDPVSRRKAAAYREAQDKKAAKXXXXXXXXXXXXXXXXXKRKRLEVLKEATAGMTNVAASLAK 227
            ASK A+DRACPNGDPVSRRKAAA+R  Q+KKAA+ XXXXXXXX        KRKRL+VL  AT GMT VA SLAK
Sbjct:  242 ASKPALDRACPNGDPVSRRKAAAFRAEQEKKAARAXXXXXXXXRASEEVENKRKRLQVLTAATEGMTGVATSLAK 316
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BLAST of mRNA_P-littoralis_Contig1183.8.1 vs. uniprot
Match: A0A6H5KS15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS15_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 6.370e-15
Identity = 51/75 (68.00%), Postives = 56/75 (74.67%), Query Frame = 3 
Query:    3 ASKAAMDRACPNGDPVSRRKAAAYREAQDKKAAKXXXXXXXXXXXXXXXXXKRKRLEVLKEATAGMTNVAASLAK 227
            ASK A+DRACPNGDPVSRRKAAA+R  Q+KKAA+  XXXXXXX        KRKRL+VL   T GMT VA SLAK
Sbjct:   87 ASKPALDRACPNGDPVSRRKAAAFRAEQEKKAARAEXXXXXXXRASEEVENKRKRLQVLTVDTEGMTGVATSLAK 161
[Close]
BLAST of mRNA_P-littoralis_Contig1183.8.1 vs. uniprot
Match: A0A6H5JD04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD04_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 4.220e-14
Identity = 43/75 (57.33%), Postives = 50/75 (66.67%), Query Frame = 3 
Query:    3 ASKAAMDRACPNGDPVSRRKAAAYREAQDKKAAKXXXXXXXXXXXXXXXXXKRKRLEVLKEATAGMTNVAASLAK 227
            ASK A+DRACPNGDPVSRRKAAA+   Q+KKAA+                 KRKRL+VL  AT GMT+VA +LAK
Sbjct:  180 ASKPAVDRACPNGDPVSRRKAAAFSAEQEKKAARAEADKANAKRASEEVQNKRKRLQVLTAATEGMTDVATNLAK 254
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1183.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K8W9_9PHAE3.900e-1670.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIH2_9PHAE3.690e-1570.67Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KS15_9PHAE6.370e-1568.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JD04_9PHAE4.220e-1457.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1183contigP-littoralis_Contig1183:40880..41106 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size227
Hectar predicted targeting categoryother localisation
Exons1
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789496.9665015-CDS-P-littoralis_Contig1183:40879..410891680789496.9665015-CDS-P-littoralis_Contig1183:40879..41089Pylaiella littoralis U1_48CDSP-littoralis_Contig1183 40880..41089 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789496.9778783-UTR-P-littoralis_Contig1183:41089..411061680789496.9778783-UTR-P-littoralis_Contig1183:41089..41106Pylaiella littoralis U1_48UTRP-littoralis_Contig1183 41090..41106 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1183.8.1prot_P-littoralis_Contig1183.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1183 40880..41089 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1183.8.1

>prot_P-littoralis_Contig1183.8.1 ID=prot_P-littoralis_Contig1183.8.1|Name=mRNA_P-littoralis_Contig1183.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=70bp
MDRACPNGDPVSRRKAAAYREAQDKKAAKEEADKENAKRAAEEAENKRKR
LEVLKEATAGMTNVAASLAK
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mRNA from alignment at P-littoralis_Contig1183:40880..41106-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1183.8.1 ID=mRNA_P-littoralis_Contig1183.8.1|Name=mRNA_P-littoralis_Contig1183.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=227bp|location=Sequence derived from alignment at P-littoralis_Contig1183:40880..41106- (Pylaiella littoralis U1_48)
TCGCAAGTAAGGCGGCCATGGATCGAGCCTGCCCGAACGGTGACCCCGTG
AGCCGTCGCAAAGCGGCGGCATACAGGGAGGCACAGGATAAGAAAGCAGC
CAAAGAGGAGGCTGACAAGGAGAACGCGAAGAGGGCGGCAGAGGAGGCCG
AGAACAAGAGGAAAAGGCTGGAAGTCCTCAAGGAAGCTACGGCGGGAATG
ACGAACGTCGCCGCGAGTCTCGCCAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1183:40880..41106-

>mRNA_P-littoralis_Contig1183.8.1 ID=mRNA_P-littoralis_Contig1183.8.1|Name=mRNA_P-littoralis_Contig1183.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=210bp|location=Sequence derived from alignment at P-littoralis_Contig1183:40880..41106- (Pylaiella littoralis U1_48)
ATGGATCGAGCCTGCCCGAACGGTGACCCCGTGAGCCGTCGCAAAGCGGC
GGCATACAGGGAGGCACAGGATAAGAAAGCAGCCAAAGAGGAGGCTGACA
AGGAGAACGCGAAGAGGGCGGCAGAGGAGGCCGAGAACAAGAGGAAAAGG
CTGGAAGTCCTCAAGGAAGCTACGGCGGGAATGACGAACGTCGCCGCGAG
TCTCGCCAAG
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