mRNA_P-littoralis_Contig727.66.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig727.66.1
Unique NamemRNA_P-littoralis_Contig727.66.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig727.66.1 vs. uniprot
Match: A0A6H5JCW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW3_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.350e-21
Identity = 49/111 (44.14%), Postives = 66/111 (59.46%), Query Frame = 1 
Query:    1 RLALGVKGLNVFARSEQVAILKASYKVVPMNVSTLRNEGNFKDFLMGRYNMTPSITRWRAFRLLRS-EGNVGVCVKEFMHSRDWSGPTRDRKPRAGTPPHSMFIGSPPNLR 330
            R + G+KG N+F R++   +L+ASY  VP+  STL NEGNF   L GR N  P IT +RAFR+ +  +G V V VK  MH  +  G  R+       PPH +FIG PP ++
Sbjct:   69 RFSRGIKGKNIFTRTQLAEVLQASYTEVPVFCSTLGNEGNFNGLLQGRVNRVPDITTYRAFRVEKGGDGRVKVRVKHHMHGTECKGIGRNGDVDPNAPPHDLFIGHPPRIQ 179
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig727.66.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JCW3_9PHAE1.350e-2144.14Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig727contigP-littoralis_Contig727:135228..135564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size338
Hectar predicted targeting categoryother localisation
Exons1
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791509.4356086-CDS-P-littoralis_Contig727:135228..1355641680791509.4356086-CDS-P-littoralis_Contig727:135228..135564Pylaiella littoralis U1_48CDSP-littoralis_Contig727 135229..135564 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig727.66.1prot_P-littoralis_Contig727.66.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig727 135229..135564 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig727.66.1

>prot_P-littoralis_Contig727.66.1 ID=prot_P-littoralis_Contig727.66.1|Name=mRNA_P-littoralis_Contig727.66.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=112bp
RLALGVKGLNVFARSEQVAILKASYKVVPMNVSTLRNEGNFKDFLMGRYN
MTPSITRWRAFRLLRSEGNVGVCVKEFMHSRDWSGPTRDRKPRAGTPPHS
MFIGSPPNLRGD
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mRNA from alignment at P-littoralis_Contig727:135228..135564-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig727.66.1 ID=mRNA_P-littoralis_Contig727.66.1|Name=mRNA_P-littoralis_Contig727.66.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=337bp|location=Sequence derived from alignment at P-littoralis_Contig727:135228..135564- (Pylaiella littoralis U1_48)
AGGTTGGCCCTGGGTGTGAAAGGTCTCAACGTTTTCGCGAGGAGTGAGCA
GGTGGCTATACTCAAAGCTTCGTATAAAGTAGTTCCCATGAACGTCTCCA
CGCTCCGGAACGAGGGCAATTTCAAGGATTTTCTCATGGGGCGGTACAAT
ATGACTCCAAGCATCACGCGATGGCGGGCATTCCGGTTGCTGCGTTCGGA
AGGCAACGTTGGCGTGTGCGTGAAAGAATTCATGCATTCACGCGATTGGT
CTGGGCCGACTCGCGACAGAAAGCCCAGGGCAGGCACTCCTCCGCACAGC
ATGTTCATCGGGTCGCCGCCCAATCTTCGTGGCGACA
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Coding sequence (CDS) from alignment at P-littoralis_Contig727:135228..135564-

>mRNA_P-littoralis_Contig727.66.1 ID=mRNA_P-littoralis_Contig727.66.1|Name=mRNA_P-littoralis_Contig727.66.1|organism=Pylaiella littoralis U1_48|type=CDS|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig727:135228..135564- (Pylaiella littoralis U1_48)
AGGTTGGCCCTGGGTGTGAAAGGTCTCAACGTTTTCGCGAGGAGTGAGCA
GGTGGCTATACTCAAAGCTTCGTATAAAGTAGTTCCCATGAACGTCTCCA
CGCTCCGGAACGAGGGCAATTTCAAGGATTTTCTCATGGGGCGGTACAAT
ATGACTCCAAGCATCACGCGATGGCGGGCATTCCGGTTGCTGCGTTCGGA
AGGCAACGTTGGCGTGTGCGTGAAAGAATTCATGCATTCACGCGATTGGT
CTGGGCCGACTCGCGACAGAAAGCCCAGGGCAGGCACTCCTCCGCACAGC
ATGTTCATCGGGTCGCCGCCCAATCTTCGTGGCGAC
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