mRNA_P-littoralis_Contig727.62.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig727.62.1
Unique NamemRNA_P-littoralis_Contig727.62.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig727.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig727contigP-littoralis_Contig727:133368..134552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size506
Hectar predicted targeting categoryother localisation
Exons3
Cds size417
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791509.3656468-CDS-P-littoralis_Contig727:133367..1334791680791509.3656468-CDS-P-littoralis_Contig727:133367..133479Pylaiella littoralis U1_48CDSP-littoralis_Contig727 133368..133479 -
1680791509.3798516-CDS-P-littoralis_Contig727:133649..1339541680791509.3798516-CDS-P-littoralis_Contig727:133649..133954Pylaiella littoralis U1_48CDSP-littoralis_Contig727 133650..133954 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791509.390711-UTR-P-littoralis_Contig727:133954..1339591680791509.390711-UTR-P-littoralis_Contig727:133954..133959Pylaiella littoralis U1_48UTRP-littoralis_Contig727 133955..133959 -
1680791509.401699-UTR-P-littoralis_Contig727:134468..1345521680791509.401699-UTR-P-littoralis_Contig727:134468..134552Pylaiella littoralis U1_48UTRP-littoralis_Contig727 134469..134552 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig727.62.1prot_P-littoralis_Contig727.62.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig727 133368..133954 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig727.62.1

>prot_P-littoralis_Contig727.62.1 ID=prot_P-littoralis_Contig727.62.1|Name=mRNA_P-littoralis_Contig727.62.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=139bp
MESTGLRVEDHPLVVNYVSTRGGRPSSANILHQRPTADMVLIAHCDTGGS
QSFTCNDKVTSEHPFGAPAGTVAIPKSSMIKLPAPGRNQAVPTTALSYAV
NRFTSVGRHGVLLADRNIVRDVWSRLEDRQKDRGVRAK*
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mRNA from alignment at P-littoralis_Contig727:133368..134552-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig727.62.1 ID=mRNA_P-littoralis_Contig727.62.1|Name=mRNA_P-littoralis_Contig727.62.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1185bp|location=Sequence derived from alignment at P-littoralis_Contig727:133368..134552- (Pylaiella littoralis U1_48)
CCTAAGAAAAGACGCCTCCACGGGAAATTCAAGTCTGTTTTGGCCGGACC
GTAAGCGCAGTGCTTTGTCGAATAGTCTCTGCCAGTGAGTACCTTGGCTT
GGTCTAAAAGGCAACACTCAAGCTTTTCTTTAGACAGGGTTTCTTACATA
GGTTCATTGATGATTGTTGGATAAATGAAACAGGGGTTAAGGACGACGCA
CGAAGGCACAGAAAACGAGAGACATGAAAAATTAGCCAGGAGTTCCTATT
CGTTTTTGGGACGCGTGCGGCCTCAGTTGTTGAGCGTCTTCCTCGTTAAG
TGAACAGCCACATAGAGGGTGCATAATCCCGGTGTTTTGGTGGTTAAGGG
CGAGCTTTCTTGTTCTGGTAGCCACAAATGTTTTGGCTGTTTCGCGTAGG
CATTTCTGAGCTTTTTCGTTCTCAATTATAAATCGGTTCTCAATTAGCGT
GATCGGCTGTTGGCTGATAATTAGTTGTAGGTTCGTTAATCATCAGTCTC
CGCCCCCATTACGGCAATGATAAGGCAGTGCAATGAGCCCAACCCGTTGC
TCAAGATCAACACTGCTTATTGACCAACTGAAACCTGTTGCAGACGCCAT
GGAAAGCACCGGGCTGAGAGTGGAGGACCACCCTCTCGTTGTTAACTACG
TTTCCACGCGAGGAGGCCGACCCTCCAGCGCAAATATTTTGCACCAGCGG
CCCACTGCTGATATGGTACTCATCGCTCACTGCGATACAGGGGGAAGCCA
GTCCTTCACATGCAACGACAAGGTCACCTCCGAACATCCTTTCGGAGCTC
CGGCGGGGACGGTGGCCATTCCGAAATCATCCATGATTAAACTTCCAGCT
CCGGGCAGGAACCAAGCCGTACCGACTACAGCTTTGAGTTACGCCGTAAA
CAGGTGCGCATGACGTCTTCTATCAATGCCCCTCGGAACATGTGGGTGGC
TTCGTCCATATTGTTGTGTTTATCAGCACAGAACAGCAGCGTCTCATCAT
AGCCAGATTTCGTGGAAACTATTTTCGCTGGTTGTAGCGATCTGAACCCA
GCCGCTTGTACCGTCGAATTTAGGTTCACCTCTGTCGGGAGACACGGTGT
GCTGCTTGCCGATCGAAACATCGTTAGAGATGTCTGGAGTCGCCTTGAGG
ACAGGCAGAAAGATCGAGGTGTTCGGGCGAAGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig727:133368..134552-

>mRNA_P-littoralis_Contig727.62.1 ID=mRNA_P-littoralis_Contig727.62.1|Name=mRNA_P-littoralis_Contig727.62.1|organism=Pylaiella littoralis U1_48|type=CDS|length=417bp|location=Sequence derived from alignment at P-littoralis_Contig727:133368..134552- (Pylaiella littoralis U1_48)
ATGGAAAGCACCGGGCTGAGAGTGGAGGACCACCCTCTCGTTGTTAACTA
CGTTTCCACGCGAGGAGGCCGACCCTCCAGCGCAAATATTTTGCACCAGC
GGCCCACTGCTGATATGGTACTCATCGCTCACTGCGATACAGGGGGAAGC
CAGTCCTTCACATGCAACGACAAGGTCACCTCCGAACATCCTTTCGGAGC
TCCGGCGGGGACGGTGGCCATTCCGAAATCATCCATGATTAAACTTCCAG
CTCCGGGCAGGAACCAAGCCGTACCGACTACAGCTTTGAGTTACGCCGTA
AACAGGTTCACCTCTGTCGGGAGACACGGTGTGCTGCTTGCCGATCGAAA
CATCGTTAGAGATGTCTGGAGTCGCCTTGAGGACAGGCAGAAAGATCGAG
GTGTTCGGGCGAAGTGA
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