mRNA_P-littoralis_Contig727.37.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig727.37.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE) HSP 1 Score: 168 bits (425), Expect = 1.780e-39 Identity = 121/368 (32.88%), Postives = 170/368 (46.20%), Query Frame = 3
Query: 903 DRGWSEKQKLMACYVEGIFLDIYQVPQTLGTGINLVSTVVWLALARRLT----CSAAPRHCTSTCCFYSWTFVSAKTKTTLSWPSWDAWC*WGSLREWK*TSCKLD-THIKIDQIFSRYG*IPDRN**P*VLFRYCQATSKL*DTTCLLSSYSFKSPPRVDFLPFARCGRLALGVKGLNVFARSEQVAILKASYKAVPMNVSTLRNEGNFKDFLMGRYNMTPSITRWRAFRLLRS-EGNVGVCVKEFMHSRNWSGPTRDRKPRAGTPPHSMFIGPPPNLRGDIPPYELKPVKKETIRFIRMRYEASRERLQSAYA-DFSRWQEIIEEQNGDIALLGVPGKLPFDLPRDYLPLGDDNLFESGSGGGNNI 1985
DRG+SE+QK+MA ++EG F+++Y PQ LG G NL T LA+ R + P C + ++ K +R + + TH KIDQ+FSR+ G+KG N+F R+ L+ASY VP+ STLRNEGNFK L+GR N P+IT +RAFR+ + +G V V VK+ MH W+G D PH +FIG PP ++ D PPY+LK V ++ I+ + RY AS ERL +A+ D Q +EQ + LL G+ FDLP +LP+ ++SGSG N+
Sbjct: 155 DRGYSERQKIMAVHIEGQFVEVYFTPQYLGGGCNLACTAAHLAITRIIDKYHDSPPHPSGCIIQHAHWQVDNCVSENKNNFFLGYAGLLVAADVVRVVEIHFMMVGHTHTKIDQVFSRFS----------------------------------------------------RGIKGKNIFTRTHLAEELRASYTEVPVFCSTLRNEGNFKGLLIGRVNRVPNITTYRAFRVEKGGDGRVKVRVKKHMHGAEWNGIHEDGNLNPDALPHDLFIGSPPRIQ-DAPPYKLKRVPEDVIQKVEQRYLASHERLAAAFPLDDGAVQRAKDEQKQSVRLLRQTGEREFDLPVHWLPV-----YDSGSGDEENV 464
BLAST of mRNA_P-littoralis_Contig727.37.1 vs. uniprot
Match: A0A6H5JCW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW3_9PHAE) HSP 1 Score: 137 bits (344), Expect = 4.900e-30 Identity = 85/201 (42.29%), Postives = 109/201 (54.23%), Query Frame = 3
Query: 1395 RLALGVKGLNVFARSEQVAILKASYKAVPMNVSTLRNEGNFKDFLMGRYNMTPSITRWRAFRLLRS-EGNVGVCVKEFMHSRNWSGPTRDRKPRAGTPPHSMFIGPPPNLRGDIPPYELKPVKKETIRFIRMRYEASRERLQSAYADFSRWQEIIEEQNGDIALLGVPGKLPFDLPRDYLPLGDDNLFESGSGGGNNIPEK 1994
R + G+KG N+F R++ +L+ASY VP+ STL NEGNF L GR N P IT +RAFR+ + +G V V VK MH G R+ PPH +FIG PP ++ D PPYELK V E IR + RY AS E L + Y + Q EQ + L G FDLP +LP D E+G GN+I E+
Sbjct: 69 RFSRGIKGKNIFTRTQLAEVLQASYTEVPVFCSTLGNEGNFNGLLQGRVNRVPDITTYRAFRVEKGGDGRVKVRVKHHMHGTECKGIGRNGDVDPNAPPHDLFIGHPPRIQ-DAPPYELKEVSDEIIRKVEQRYLASHESLAATYPLGA--QRAKNEQMDSVRRLKETGLREFDLPVHWLP-DDYGGAEAGVRNGNDIEEE 265
BLAST of mRNA_P-littoralis_Contig727.37.1 vs. uniprot
Match: A0A6H5JJG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG9_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 6.020e-16 Identity = 100/353 (28.33%), Postives = 148/353 (41.93%), Query Frame = 3
Query: 903 DRGWSEKQKLMACYVEGIFLDIYQVPQTLGTGINLVSTVVWLALARRLTCSAAPRHCTSTCCFYSWTFVSAKTKTTLSWPSWDAWC*WGSLREWK*TSCKL---DTHIKIDQIFSRYG*IPDRN**P*VLFRYCQATSKL*DTTCLLSSYSFKSPPRVDFLPFARCGRLALGVKGLNVFARSEQVAILKASYKAVPMNVSTLRNEGNFKDFLMGRYNMTPSITRWRAFRLLRSEGNVGVCVKEFMHSRNWSGPTRDRKPRAGTPPHSMFIGPPPNLRGDI-----PPYELKPVKKETIRFIRMRYEASRERLQSAYADFSRWQEIIEEQNGD-IALLGVPGKLPFDLPRDYLP 1934
DRG++E+QK+ V GI + ++ +PQ LGTG N+V T ++ L LT +H F ++ K A G +R T C + THI+IDQ+FS C A S VKG VF R +++YK +P+ TL N NFKD + P+IT+++AF + + + VK +H +W G + D K GT + F G D+ P Y LK V +E IR I+ R EAS +RL A S E ++ Q+ D + +L + G+ FDL ++LP
Sbjct: 428 DRGYAERQKIYGALVSGIMMQVFMIPQILGTGSNMVCTTLF-TLFMELTLQW--KHSLGDV-FIQMDNTVSENKNNFIMGFLAALVGRGVMRSV--TLCFMMVGHTHIQIDQVFS------------------CFARS----------------------------------VKGCAVFTREHLAEFFESAYKTLPVKCRTLENLANFKDLVQPVTRRIPNITKFQAFNISKEGTAIVAKVKTKLHHDDWLGFSADGK-TVGT--GAGFTGWRLMRERDVRLEETPSYLLKTVDEEIIRKIQTRQEASWKRLP---AFVSLDPEQVKAQHLDSLRVLRMQGRRNFDLETNWLP 716
BLAST of mRNA_P-littoralis_Contig727.37.1 vs. uniprot
Match: A0A6H5KUA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUA0_9PHAE) HSP 1 Score: 55.8 bits (133), Expect = 2.450e-6 Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 2
Query: 1073 YIDVLLLFLDICVGENKNNIVMAFLGCLVLMGVVERVEVNFMQVGHTH 1216
YI + +D CV ENKN+IV+ +LG LV G++ VEV FM VGHTH
Sbjct: 10 YIYRFTIQVDNCVSENKNHIVIGYLGSLVAQGIIGEVEVQFMPVGHTH 57
BLAST of mRNA_P-littoralis_Contig727.37.1 vs. uniprot
Match: A0A6H5KN27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN27_9PHAE) HSP 1 Score: 60.1 bits (144), Expect = 3.570e-6 Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 2
Query: 1073 YIDVLLLFLDICVGENKNNIVMAFLGCLVLMGVVERVEVNFMQVGHTH 1216
YI L L LD CVGENKNNIV+AF+G LV GV+ EV F+ VGHTH
Sbjct: 37 YIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTH 84
BLAST of mRNA_P-littoralis_Contig727.37.1 vs. uniprot
Match: A0A6H5KK38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK38_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 1.230e-5 Identity = 32/55 (58.18%), Postives = 36/55 (65.45%), Query Frame = 2
Query: 1073 YIDVLLLFLDICVGENKNNIVMAFLGCLVLMGVVERVEVNFMQVGHTHKNRSDFF 1237
+I L L LD CVGENKNNIVMAF+G LV GV+ EV F+ VGHTH F
Sbjct: 264 HIKRLHLQLDNCVGENKNNIVMAFIGGLVAAGVIGSAEVCFLIVGHTHTKTDQVF 318
BLAST of mRNA_P-littoralis_Contig727.37.1 vs. uniprot
Match: A0A6H5KAY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY2_9PHAE) HSP 1 Score: 60.1 bits (144), Expect = 1.280e-5 Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 2
Query: 1073 YIDVLLLFLDICVGENKNNIVMAFLGCLVLMGVVERVEVNFMQVGHTH 1216
YI L L LD CVGENKNNIV+AF+G LV GV+ EV F+ VGHTH
Sbjct: 37 YIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTH 84
BLAST of mRNA_P-littoralis_Contig727.37.1 vs. uniprot
Match: A0A6H5KA02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA02_9PHAE) HSP 1 Score: 60.1 bits (144), Expect = 1.540e-5 Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 2
Query: 1073 YIDVLLLFLDICVGENKNNIVMAFLGCLVLMGVVERVEVNFMQVGHTH 1216
YI L L LD CVGENKNNIV+AF+G LV GV+ EV F+ VGHTH
Sbjct: 149 YIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTH 196 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig727.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig727.37.1 >prot_P-littoralis_Contig727.37.1 ID=prot_P-littoralis_Contig727.37.1|Name=mRNA_P-littoralis_Contig727.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=207bp MNVSTLRNEGNFKDFLMGRYNMTPSITRWRAFRLLRSEGNVGVCVKEFMHback to top mRNA from alignment at P-littoralis_Contig727:107967..111434- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig727.37.1 ID=mRNA_P-littoralis_Contig727.37.1|Name=mRNA_P-littoralis_Contig727.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3468bp|location=Sequence derived from alignment at P-littoralis_Contig727:107967..111434- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig727:107967..111434- >mRNA_P-littoralis_Contig727.37.1 ID=mRNA_P-littoralis_Contig727.37.1|Name=mRNA_P-littoralis_Contig727.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=621bp|location=Sequence derived from alignment at P-littoralis_Contig727:107967..111434- (Pylaiella littoralis U1_48)back to top |