mRNA_P-littoralis_Contig727.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig727.17.1
Unique NamemRNA_P-littoralis_Contig727.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig727.17.1 vs. uniprot
Match: A0A6H5JEY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY4_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 9.350e-7
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 3 
Query:  135 MGSDKDEKIARG-GPLSILVHEWARVQRELLRLERDEEISQVADTITQLTAQ 287
            M ++  +  ARG GP+SI  +EWARVQR+LLRLERDEE+ QVA  + QLTAQ
Sbjct:    1 MSNNDTDSTARGTGPVSI--NEWARVQRKLLRLERDEEVEQVAGMLNQLTAQ 50
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BLAST of mRNA_P-littoralis_Contig727.17.1 vs. uniprot
Match: D7G8K5_ECTSI (R3H domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8K5_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 3.960e-5
Identity = 31/49 (63.27%), Postives = 36/49 (73.47%), Query Frame = 3 
Query:  141 SDKDEKIARGGPLSILVHEWARVQRELLRLERDEEISQVADTITQLTAQ 287
            +D D      GP+SI  +EWARVQR+LLRLERDEE+ QVA  I QLTAQ
Sbjct:    4 NDTDSTARDTGPVSI--NEWARVQRKLLRLERDEEVEQVAGMINQLTAQ 50
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig727.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JEY4_9PHAE9.350e-761.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8K5_ECTSI3.960e-563.27R3H domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig727contigP-littoralis_Contig727:63310..68679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G8K5
Preferred nameIGHMBP2
PFAMsAAA_11,AAA_12,R3H,zf-AN1
Model size983
Max annot lvl2759|Eukaryota
KEGG koko:K19036,ko:K19783
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0000122,GO:0000166,GO:0000228,GO:0000278,GO:0000976,GO:0000977,GO:0000981,GO:0000982,GO:0001012,GO:0001067,GO:0001078,GO:0001227,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003690,GO:0003697,GO:0003700,GO:0003723,GO:0003724,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006310,GO:0006355,GO:0006357,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007275,GO:0007399,GO:0007417,GO:0008026,GO:0008094,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0021510,GO:0021515,GO:0021517,GO:0021522,GO:0021953,GO:0022008,GO:0022402,GO:0022607,GO:0022616,GO:0030154,GO:0030182,GO:0030424,GO:0030426,GO:0030427,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032574,GO:0032575,GO:0032991,GO:0033202,GO:0033203,GO:0033260,GO:0033267,GO:0033554,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036477,GO:0042623,GO:0042995,GO:0043005,GO:0043021,GO:0043022,GO:0043025,GO:0043043,GO:0043139,GO:0043141,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0043603,GO:0043604,GO:0043621,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044297,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044463,GO:0044464,GO:0044786,GO:0044877,GO:0045892,GO:0045934,GO:0046483,GO:0048471,GO:0048513,GO:0048519,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050905,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051259,GO:0051260,GO:0051276,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0097458,GO:0120025,GO:0120038,GO:0140097,GO:0140098,GO:0140110,GO:0150034,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902296,GO:1902319,GO:1902494,GO:1902679,GO:1902969,GO:1902983,GO:1903047,GO:1903459,GO:1903506,GO:1903507,GO:1990837,GO:1990904,GO:1990955,GO:2000112,GO:2000113,GO:2001141
Exons4
Evalue2.48e-08
EggNOG OGsCOG1112@1|root,KOG1803@2759|Eukaryota
EC3.6.4.12,3.6.4.13
DescriptionATP-dependent 5'-3' RNA helicase activity
Cds size252
COG categoryL
BRITEko00000,ko01000,ko03009,ko03012,ko03032
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig727.17.1prot_P-littoralis_Contig727.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig727 63444..64659 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791508.9201434-UTR-P-littoralis_Contig727:63309..634431680791508.9201434-UTR-P-littoralis_Contig727:63309..63443Pylaiella littoralis U1_48UTRP-littoralis_Contig727 63310..63443 +
1680791508.960686-UTR-P-littoralis_Contig727:64659..646941680791508.960686-UTR-P-littoralis_Contig727:64659..64694Pylaiella littoralis U1_48UTRP-littoralis_Contig727 64660..64694 +
1680791508.9711816-UTR-P-littoralis_Contig727:65696..657931680791508.9711816-UTR-P-littoralis_Contig727:65696..65793Pylaiella littoralis U1_48UTRP-littoralis_Contig727 65697..65793 +
1680791508.981101-UTR-P-littoralis_Contig727:68214..686791680791508.981101-UTR-P-littoralis_Contig727:68214..68679Pylaiella littoralis U1_48UTRP-littoralis_Contig727 68215..68679 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791508.9349473-CDS-P-littoralis_Contig727:63443..635961680791508.9349473-CDS-P-littoralis_Contig727:63443..63596Pylaiella littoralis U1_48CDSP-littoralis_Contig727 63444..63596 +
1680791508.9449863-CDS-P-littoralis_Contig727:64560..646591680791508.9449863-CDS-P-littoralis_Contig727:64560..64659Pylaiella littoralis U1_48CDSP-littoralis_Contig727 64561..64659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig727.17.1

>prot_P-littoralis_Contig727.17.1 ID=prot_P-littoralis_Contig727.17.1|Name=mRNA_P-littoralis_Contig727.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=84bp
MGSDKDEKIARGGPLSILVHEWARVQRELLRLERDEEISQVADTITQLTA
QMSEGTERTRQQARALGWGGGEGQYQERGRHTR*
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mRNA from alignment at P-littoralis_Contig727:63310..68679+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig727.17.1 ID=mRNA_P-littoralis_Contig727.17.1|Name=mRNA_P-littoralis_Contig727.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5370bp|location=Sequence derived from alignment at P-littoralis_Contig727:63310..68679+ (Pylaiella littoralis U1_48)
GCTTGTCCAAGCGGAGGTGTGTGGTCTGCCTCAGACACCAGTGCTGCACC
AGACACTGAGAGAGTGAGAGCGAACAACGGTGGACGTTGTGCCGCCCCCC
CCTCTCTACAGTGCATATACGTACGACGCACGCGATGGGCAGCGATAAGG
ATGAAAAAATTGCCAGAGGAGGTCCGTTATCCATACTTGTACACGAGTGG
GCTCGGGTGCAGCGGGAGCTGCTGAGGCTCGAGAGGGACGAGGAGATATC
CCAGGTCGCAGACACAATCACCCAGCTCACGGCTCAGGTGTGTTTGATGA
GCGGTGGGTGTGTTGTTGTTGTTGTTGTTGTTGATTCTCACATTAGCTCA
CGACCGCCGCAGTCTAGCCCGTGGTCACAAACCAGGCACATATCGTGCTA
GGAGGAAAACAAATAAAAATAAAATATATGGACTGTGATCACCCACAGTG
TGGTCCGGGTTGACAACGTTATTAGGAAGCAGTTGCACCAGAAATAGCGC
GGCGGTCGCTGCCAGCCGTACTGCTGAAGTCGTGGGGAGTACTGCGGATT
GCGAACTTCTTGTTACACAACTGCTGCTCTGTGCGGCTGTGTGTGTGTGT
GTGTGTGTGTTGGTGTGTTGACATCCCATATATTGTGGGCACCAGTATAG
ACCACTTGCAATAACGTTTTTCTTTTCCTCAAAATTGCTCTGGGGGGGGC
CCTTTTGGTCTTTTCAAACCTATATAAAACGTTGAGCCCCTTTTGAAAAA
AGAAACACCTCAACACGAACACACAACACGGGCGGAACAAAGGCCCACGC
CACGCCCCTCTGAGGGGGGAGAGCCTCACGGGCAAGGCATCCCACCTAGG
CCGACGCTTTAGTTCACAGCCGCTGCTTCAACCCGATGACTGGGCTGGTG
GGACCAGATAGACAGCGTTGCACGGGGTGCGGTCTCAGAAAAAAAATGCG
GCTAGATCGTTCAGCAGTACAGAGAAGAGCTGTTGTCGTGCTCCTTGTTA
GATTTGTTGTTGCAGCCAGCACAACAACACAACAGAGCGCGGCGTGCGAA
GGAATGACGGAGCTTCGGTCGGCAGAGAGTGCCGCATTTACCCAGCCCCG
GCAGCATGATGCGTGACAGGTCATTATCGCTGCAGCCCGTGGGCGACCGG
TGCTGGCTTGTAGAAATTGGTACGATGTGAGCGGCGAGATTCCCTGCTGA
TGTCCAGATGCTTGGATGCTTGTCTCCGCTGCTGATGATTCTGATCGGGA
GATGTCCGAGGGGACGGAGAGGACGAGACAGCAGGCACGGGCGCTTGGGT
GGGGAGGTGGCGAGGGGCAGTACCAGGAGAGGGGGAGGCATACCAGATGA
ACGCCACAGCTGTCATTTTTGATGCTCACCAGCAGGTGCAGTTCAAGAGC
TATTCCTTGGACATGAAAACGGTAGAAGGTGACTGTCTTTGTTCCTCCTG
TAGTCTTGTTTGAACTCGGGAGTGAACCGCTCGATGATGACTCTGACATT
ACATCACTACTGCAGCTGCTGCTTTCGCCGTATGTATCAGACACACACGC
CCCCATGTCACTTGTGTTGCTCTCTTTTGTCCAGAACAATGGATAGCAGT
GTTGTTATGCGTTGAACACTACTGAGAGTAGAATGCAAAGCGTGCAAGAC
CCAAGCAGTCCAAGCCCCTGCACCCCTTTTCGAAAGTTGCGCAAGCAAAC
ACCGTACGCTTTCAGTAAATAGCTAGAGCAGTACAGCATACTTCGAAAGT
ATACAGCGGTACTGCTGCTGTGTACCTGTACCAGGGATAAAATCGGTACC
CTCGACGTTTCCAGCTACATTGGGAGCAGCACAGCCGTTGACACAACAAT
CCCATTTGAAGAGAGATTAGCCAGCACCCGCACAGCGTGTGAGACACGGC
ACTTGATTGCGACTGCTGTTGCCACCTCTGGGTGGTTACCTTTACTGAGA
TGTATGTACGAACAGGGATGAAAAGTTGCAACGGATTGGCCGTCAGATTC
TGACTTCGAATTACAGAGTATGTCAGCTATTAATAGGGACAAGAGCAGGC
AGATTATTTTCCGCGAGTCATACGCTACATATCCCACCGCAGCGAGTAGC
CGATGTGTACAGCACCATCTGCGGCACAGATTGTAAACTTGTAGGTATCT
CCTACATGCACACATAAGATCGGCCATCGCACATCAAATTGCCACAAAAA
TACTCCATCTACTACTGCAGTAAGTTGACTGTGTACAAGTTCTAATTCAA
CTTTGTACTTCTGAGTAGATAAAGAAGGTGCTCAGCATGTACCGAAAAAG
AAGCCGGCCGAGTTTCACGTGTTGATTGCGGTGTTCCAACGATACTTGCC
TTGGCTCCCCATCCCCCCGCCGCCGCGGTTGGCGCAGGTGAAGCCTCGCC
GGTGGAGAAGCAAAGCAAGACGGATCTCACGCCACCAAGACCACAACGAA
TACTTGGCTCCAGCTCGGCTTGCAGTAACCCACGGTTCTCGAAGCAGGGC
CATGAGACCAGTAGAAAAGGGTTGGGGGCCGAAACAACGGCTGGAAGGTG
GTGAATGGGGCGTTATCGCGACACAAATCTTGTGATTCAGAACTCCGTGA
TAATTTCGCCCAATGGAATATCCAAGATGATAACCTCCCCCAGTCTAAAT
TCAAGACAAACTAGTGAACACGAGAGGCGCTCGAATGAGACCTGTGGTGT
GAATTAAGCCGGGGTTTCGAATGGTATCAGTAgGGGAAATCACGTAGAAG
CGACGTATGTGTTGGCTAACTCAGATTTTCTACTGTGGCTGTGTTTTCGG
TGGTTGGAAATATGTTGTACAGCAGTCGGGATTCTGTCCAATCTCGGCCC
GAGATCAGACACCTTGCATGATCTTCCACTGCTTTACTCACCCCCATGGG
CCAGGATTTTGGGTCTACAGCAGCAGTAGCTTATACCACTTGCTGCCTAG
GACAACACTCAGTTCAGGAGATCGGGGCCCATGGCGGCGAGTACAGCAGT
GAAATATCATGTAAGATGTTTGGTTTCGGGCTGTGATGCGGACGGTTTTT
GGGGTGCTGCACCACATACCTTCGACCACCGATATCTAAGCCCCGTCAAA
AGCTCTGAGGTTGCCAACACGCACGTCGCCTCTACATTATGTATTCTACT
GATATCCATATAAACCCTGGCTTCATTCACGCGGGAAGGTCGATTTCTAT
CTTTGTACTAGATGAAGACTGGATGTGCTTTTGAAATTTAGTGGGGTTGA
ATAGGGTCCTTTAAGTGGCATGACTGAACGTTTATTGCATACTTCGTATG
ATATGACAGACAAGCTgcGCACAAGAAAGTTTGTTTCTAATCGATTTGTA
ACGGCCGTATTTTGAACGCTTCCAGCACACAGCACCCGAAAAATTTGAGC
ATGTGTGTATCGGTAGCCTTATCTGCGCATGCCAGGTGCATGATTTTTAA
ACCCTACTACCGGTACACAACCAACGTCCACATTTGTCGATATTTTGAAA
CAACAGTGAGACAAGTAATTATGTTATGCGTTCCTCGGTGCGTGCGACAG
CAGAGAAAGAGAAAGAGAAGAGCGAAAGCAATCGCGCAAGTGTGATTGCA
TTATTTGTTGTGTGTGCGCTGCACTACTGCGGCCGTGCTGTGAGTGTGCT
TGTGTGTGCACTTACGGGTGCCGCTGTACTGCGCGCTAAGTATGTGTGTT
GCCTCTGCGGTACTACTTCTGCGCCTACCTTGTTTGCCGCTGTATATTCT
CCTTTTCGTGGTCATGGCGCTGTAGGGACGTTTGGAGATCTACTTATCCG
AAAGGCCTTGTAAAGGATGTTCTCACCGTCTATACTCGTACAAGGGCGTT
CCCGTACAGCATATAACGAAAGGTAATCTATCATAGTGTTGTGTACATAT
CATACCACTCTGCAACTCTGTACTGCTGCGTGTTGGACTTCAAACAGCCC
GGCCCAAGCGACGTGGAACAACCAGCAACCCTGGTCGCTAGGGTGCCAAA
TTTATGTGCCAAATCTTTAAACAGAGTCCATTGAAGAAAACACTAGTGAC
ACTCTTCACCTCCTCACGGGAGATCGAGAAGCGGGAGTGTGAACTGCTGG
AAAGTTTAAATGTGCGTTTTAGTCAAAAATAGAACAGACTGACCGTTTTC
CCGTTGAGAATGCCGCATCCACAGCAGTCCAACTAAGAAATCGATAGAAT
GTACTGACGGTGTGAGAGACGTCGCACCCCCAAACAGCGGAATCAGGCAG
GCAGAAACATCGTCAGACAGCCCGTGTCCAAAGTGTAGTCCCCTTTGTGA
AAATGTGCATGTGTATTGGATAACATCCTCGGAACGAACGACCCTGTGAT
CACTTGCAAGAGTGCGGCTCAGGATCCCTTCCGCATTTCCCAGATTTATA
TTCTTGACGTTTCCAATAAATTTTTCAGCTTACGAGAGGTACCTCAAGGT
TGGTTGGTTTCTCTGTAGCCGGCAGATTTTGTGTGAGGTATTTCCATAAC
CGCGCATGACTAATAAATTTCATTGCAGCATGATAGAACGAAAACAACCA
CCTTGCCTGTCTGTGTGTATGTTGTTGTGCTTTGGCCCAAGGCTCCTTAA
GGTCATTGTTCAATTCCGATCCACTTGGATCGATTTCAAAAGTTCCTACG
AATGGATCAGGAATATGTGCATTTTAATAGTTTTCTCACTTCTGGTGCCC
CCAAAAGGTCTTTCAGACCTCGCGGAATAAAATGCAAGAAAAACATCATC
TATCATATCAAACCTCTTCATTGTGTCAGCGATACAACGCACTCTTAGTA
GTTTTGAATATTTAGGCTTTCTGTCTTTCTTTGTGTTGCTGTCGCTCATG
TTTGAATTACGGGGCACCGGATCACATCGCTACCCTGATAATGCTTCCTG
CGCAGGTTCAACGAAGCAGCCCGGTCAGCCCGATAGGAAGAGTGGAAAAT
ATACGAGGACAAGCATGGCGTACGCAGCCCAGATCGAATAAACCGATCTA
AGCTACTGCTGGTGTGTCGCACGGACATCATCAGTAATAGCAGTGAATGG
GGCAGGGGAGTCGCGCAAGGACATCAGATCATGTCCCGTAATTTTCCTTC
TCGGGGGATGGTAGAAAGACTTGGATGTTCCGGCGTTATCCTGCGATAGC
CTGGACCCATGAGGTCATTTGACTGATGTGTGTTTGCTTAAATTCGGGTC
ATTGCTTATTTTCATTGAGCTTATAATGGAGGCACCGGCAAGTAGTGCAA
TATGAAACTTGTTTCAATGGTGTATCCATCGGGATGAGCAGAACTCTTCA
TGTTTCGGGCAATGAACAAAATAGAGACACCGGTGGCATCGTGACCCAAC
GCCGAAAACCACGTTGTTGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig727:63310..68679+

>mRNA_P-littoralis_Contig727.17.1 ID=mRNA_P-littoralis_Contig727.17.1|Name=mRNA_P-littoralis_Contig727.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=252bp|location=Sequence derived from alignment at P-littoralis_Contig727:63310..68679+ (Pylaiella littoralis U1_48)
ATGGGCAGCGATAAGGATGAAAAAATTGCCAGAGGAGGTCCGTTATCCAT
ACTTGTACACGAGTGGGCTCGGGTGCAGCGGGAGCTGCTGAGGCTCGAGA
GGGACGAGGAGATATCCCAGGTCGCAGACACAATCACCCAGCTCACGGCT
CAGATGTCCGAGGGGACGGAGAGGACGAGACAGCAGGCACGGGCGCTTGG
GTGGGGAGGTGGCGAGGGGCAGTACCAGGAGAGGGGGAGGCATACCAGAT
GA
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