mRNA_P-littoralis_Contig727.61.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig727.61.1
Unique NamemRNA_P-littoralis_Contig727.61.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig727.61.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig727contigP-littoralis_Contig727:132066..133360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size690
Hectar predicted targeting categoryother localisation
Exons3
Cds size411
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791508.2687426-CDS-P-littoralis_Contig727:132065..1324761680791508.2687426-CDS-P-littoralis_Contig727:132065..132476Pylaiella littoralis U1_48CDSP-littoralis_Contig727 132066..132476 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791508.2794213-UTR-P-littoralis_Contig727:132476..1324831680791508.2794213-UTR-P-littoralis_Contig727:132476..132483Pylaiella littoralis U1_48UTRP-littoralis_Contig727 132477..132483 -
1680791508.2893696-UTR-P-littoralis_Contig727:132633..1328371680791508.2893696-UTR-P-littoralis_Contig727:132633..132837Pylaiella littoralis U1_48UTRP-littoralis_Contig727 132634..132837 -
1680791508.303376-UTR-P-littoralis_Contig727:133294..1333601680791508.303376-UTR-P-littoralis_Contig727:133294..133360Pylaiella littoralis U1_48UTRP-littoralis_Contig727 133295..133360 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig727.61.1prot_P-littoralis_Contig727.61.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig727 132066..132476 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig727.61.1

>prot_P-littoralis_Contig727.61.1 ID=prot_P-littoralis_Contig727.61.1|Name=mRNA_P-littoralis_Contig727.61.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=137bp
MSEPCSRPKRTSYTPPGLVVFRSGEKSSSEITLKKQFQAAVGSTTTKLSQ
DLDFVRLVRVYNNEELRQMISKEESCNSESAMYMVVSASCPAYYAEVEET
GSGSRTELEIIASKAFADKSTPMTEFLGPMAPGMKMN
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mRNA from alignment at P-littoralis_Contig727:132066..133360-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig727.61.1 ID=mRNA_P-littoralis_Contig727.61.1|Name=mRNA_P-littoralis_Contig727.61.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1295bp|location=Sequence derived from alignment at P-littoralis_Contig727:132066..133360- (Pylaiella littoralis U1_48)
CGCGAGACTTTTCGAGCCAGAGCAGAGCTTGACTTCAACAGGTCATTCAA
GGAAGGGATGTATCAGGTATGTCGAAACGCTCATCTATGCCTTTTCTCAA
TAACCTCTTCGTCGACACACTGTGACTTAACTTGAAAGCGAACATACTAC
TTCGGTCACGCCTCTGGCCGTAAGATCTACTGTGAACCCCTCTGCCTGCT
CACCCCTCACCCCCCCCCTCCCGATTTTTTTTTGAGTTCATGCCTCAGGG
TTGATTTTGTCGTAGCAGACTTTCGAAATATAGTTCGGGGGGAAGTTCAA
AACCGTGGAATTAACGACGGGGAGGTGTACTTTTCTTCCAAATCATGAAG
GGCGGGGTGGGGGGATGTGTGTGGAGGTAAATGTAGTAAAGGTGGAGGAG
AAGTAAGGGCACCCCCCCTATTATAGGCAAGTTCTTTTGGGTATGTGCAT
CAGCTGCCAGGAAACATTATTCACGTTGTGTGCACTCTGATATTTGATCA
TTGTTTGACTTTGTTGGACACAGGAATGCGCACGCGAGGCGCCCGATACA
GTCGTCGGACCCAGGCGTCTTCCGAAAGGCGTTCTTTCGGACACAATTCC
GCCCAAGGTGCACGCTATGGTCAAATCTAGAATGGACCAAGATCCAAACG
TGAGCGAGGCGGATGCCCTCTTTTACACTGCAAAAGACATGGCGAAATCC
ATGGCATGGCACATCGGAGGTGAAAAGGTGACACAAATATCAACGACTGT
TCCTTCCAGTAGAACAGGTATCTGGAAATAATAAACCGACTTGTGCGTAC
GGATCAAAGCCCCATTTCCTGAACAGAAACAGCCCGGTGATGACGCCCTC
AATCCCCCCTAACGTGAAAACATACAGATAGGTGATGTCGGAGCCGTGCT
CGAGACCAAAGCGAACAAGCTATACGCCGCCAGGACTTGTGGTATTCCGC
TCTGGGGAGAAATCATCATCAGAGATCACGTTAAAGAAGCAGTTCCAGGC
CGCGGTGGGAAGCACTACAACTAAGCTTTCGCAAGACTTGGATTTTGTTC
GACTTGTTCGCGTGTACAACAACGAAGAGCTGCGCCAGATGATCAGCAAA
GAAGAGAGCTGTAACTCGGAGTCCGCTATGTACATGGTAGTGAGCGCGTC
ATGCCCTGCATACTACGCCGAAGTAGAGGAAACCGGATCTGGAAGCAGAA
CAGAACTTGAGATTATCGCCTCAAAGGCTTTCGCTGACAAGTCGACTCCG
ATGACGGAATTCCTCGGGCCGATGGCACCAGGGATGAAGATGAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig727:132066..133360-

>mRNA_P-littoralis_Contig727.61.1 ID=mRNA_P-littoralis_Contig727.61.1|Name=mRNA_P-littoralis_Contig727.61.1|organism=Pylaiella littoralis U1_48|type=CDS|length=411bp|location=Sequence derived from alignment at P-littoralis_Contig727:132066..133360- (Pylaiella littoralis U1_48)
ATGTCGGAGCCGTGCTCGAGACCAAAGCGAACAAGCTATACGCCGCCAGG
ACTTGTGGTATTCCGCTCTGGGGAGAAATCATCATCAGAGATCACGTTAA
AGAAGCAGTTCCAGGCCGCGGTGGGAAGCACTACAACTAAGCTTTCGCAA
GACTTGGATTTTGTTCGACTTGTTCGCGTGTACAACAACGAAGAGCTGCG
CCAGATGATCAGCAAAGAAGAGAGCTGTAACTCGGAGTCCGCTATGTACA
TGGTAGTGAGCGCGTCATGCCCTGCATACTACGCCGAAGTAGAGGAAACC
GGATCTGGAAGCAGAACAGAACTTGAGATTATCGCCTCAAAGGCTTTCGC
TGACAAGTCGACTCCGATGACGGAATTCCTCGGGCCGATGGCACCAGGGA
TGAAGATGAAC
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