mRNA_P-littoralis_Contig1183.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1183.1.1
Unique NamemRNA_P-littoralis_Contig1183.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1183.1.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 3.720e-8
Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    1 DPLDWWRVNDMN---TFGVARRLLSIPVSQAQSERVFSGSGQIATVKRNRLAAENV 159
            DPLDWWRV   +      +ARR+L+IP +QA+SER+FS +G I T  RN LA   V
Sbjct:  222 DPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTV 277
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BLAST of mRNA_P-littoralis_Contig1183.1.1 vs. uniprot
Match: UPI000C26C2C9 (zinc finger BED domain-containing protein 4-like n=3 Tax=Drosophila willistoni TaxID=7260 RepID=UPI000C26C2C9)

HSP 1 Score: 51.2 bits (121), Expect = 1.690e-6
Identity = 26/57 (45.61%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    1 DPLDWWRVNDMNTFG----VARRLLSIPVSQAQSERVFSGSGQIATVKRNRLAAENV 159
            DPLD+W++N++  FG     A+++L IP S  +SERVFS +G+I + KR+RL  + V
Sbjct:   90 DPLDYWKINEIQ-FGQLAKCAKKILCIPGSSVESERVFSKAGEIVSQKRSRLKPKAV 145
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BLAST of mRNA_P-littoralis_Contig1183.1.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 3.330e-6
Identity = 29/56 (51.79%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:    1 DPLDWWRVNDMN---TFGVARRLLSIPVSQAQSERVFSGSGQIATVKRNRLAAENV 159
            +PLD WR   +       +ARR+L+IP SQAQSERVFS +G   T  R+RL  ENV
Sbjct:  482 NPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENV 537
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BLAST of mRNA_P-littoralis_Contig1183.1.1 vs. uniprot
Match: A0A6A4FHD2_9STRA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4FHD2_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 5.620e-5
Identity = 26/56 (46.43%), Postives = 32/56 (57.14%), Query Frame = 1 
Query:    1 DPLDWWRVNDMN---TFGVARRLLSIPVSQAQSERVFSGSGQIATVKRNRLAAENV 159
            +P +WWRVN  N      +AR+ L    +   SER FS SG I TVKR+ LA E V
Sbjct:  782 NPFEWWRVNSSNYPNLSRLARKWLGTVATSVPSERAFSTSGNILTVKRSSLAPEMV 837
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1183.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JWI1_9PHAE3.720e-851.79Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
UPI000C26C2C91.690e-645.61zinc finger BED domain-containing protein 4-like n... [more]
D8LCS5_ECTSI3.330e-651.79Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6A4FHD2_9STRA5.620e-546.43Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1183contigP-littoralis_Contig1183:25073..25231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LCS5
PFAMsDUF659,Dimer_Tnp_hAT,zf-BED
Model size159
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue3.86e-05
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota
Descriptionprotein dimerization activity
Cds size129
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789496.8648295-CDS-P-littoralis_Contig1183:25072..252011680789496.8648295-CDS-P-littoralis_Contig1183:25072..25201Pylaiella littoralis U1_48CDSP-littoralis_Contig1183 25073..25201 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789496.8772345-UTR-P-littoralis_Contig1183:25201..252311680789496.8772345-UTR-P-littoralis_Contig1183:25201..25231Pylaiella littoralis U1_48UTRP-littoralis_Contig1183 25202..25231 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1183.1.1prot_P-littoralis_Contig1183.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1183 25073..25201 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1183.1.1

>prot_P-littoralis_Contig1183.1.1 ID=prot_P-littoralis_Contig1183.1.1|Name=mRNA_P-littoralis_Contig1183.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=43bp
MNTFGVARRLLSIPVSQAQSERVFSGSGQIATVKRNRLAAENV
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mRNA from alignment at P-littoralis_Contig1183:25073..25231-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1183.1.1 ID=mRNA_P-littoralis_Contig1183.1.1|Name=mRNA_P-littoralis_Contig1183.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=159bp|location=Sequence derived from alignment at P-littoralis_Contig1183:25073..25231- (Pylaiella littoralis U1_48)
GACCCACTGGATTGGTGGCGGGTAAACGACATGAACACTTTCGGCGTTGC
CCGGCGCCTTTTGTCCATTCCGGTATCGCAGGCGCAGTCAGAGCGCGTGT
TCTCGGGCTCTGGGCAGATTGCCACCGTTAAGCGCAACCGCCTGGCAGCA
GAAAACGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1183:25073..25231-

>mRNA_P-littoralis_Contig1183.1.1 ID=mRNA_P-littoralis_Contig1183.1.1|Name=mRNA_P-littoralis_Contig1183.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=129bp|location=Sequence derived from alignment at P-littoralis_Contig1183:25073..25231- (Pylaiella littoralis U1_48)
ATGAACACTTTCGGCGTTGCCCGGCGCCTTTTGTCCATTCCGGTATCGCA
GGCGCAGTCAGAGCGCGTGTTCTCGGGCTCTGGGCAGATTGCCACCGTTA
AGCGCAACCGCCTGGCAGCAGAAAACGTG
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