mRNA_P-littoralis_Contig727.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig727.27.1
Unique NamemRNA_P-littoralis_Contig727.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig727.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig727contigP-littoralis_Contig727:79769..80204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size436
Hectar predicted targeting categorysignal anchor
Exons1
Cds size339
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791508.159359-UTR-P-littoralis_Contig727:79768..797821680791508.159359-UTR-P-littoralis_Contig727:79768..79782Pylaiella littoralis U1_48UTRP-littoralis_Contig727 79769..79782 +
1680791508.1832395-UTR-P-littoralis_Contig727:80121..802041680791508.1832395-UTR-P-littoralis_Contig727:80121..80204Pylaiella littoralis U1_48UTRP-littoralis_Contig727 80122..80204 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791508.1736467-CDS-P-littoralis_Contig727:79782..801211680791508.1736467-CDS-P-littoralis_Contig727:79782..80121Pylaiella littoralis U1_48CDSP-littoralis_Contig727 79783..80121 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig727.27.1prot_P-littoralis_Contig727.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig727 79783..80121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig727.27.1

>prot_P-littoralis_Contig727.27.1 ID=prot_P-littoralis_Contig727.27.1|Name=mRNA_P-littoralis_Contig727.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=113bp
MTKGQLDDLYRLCFGPRQPGMARLKNPLRRACLPAFTLFWLCCFDCCMSL
GIFVGSIRMCFKSFIGHMGRFVLPFPEKGGAVEVFSLVEMMMSLVCAVVL
LSPSLPLLLPPP*
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mRNA from alignment at P-littoralis_Contig727:79769..80204+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig727.27.1 ID=mRNA_P-littoralis_Contig727.27.1|Name=mRNA_P-littoralis_Contig727.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=436bp|location=Sequence derived from alignment at P-littoralis_Contig727:79769..80204+ (Pylaiella littoralis U1_48)
GATTGCTGGAGACCATGACCAAGGGTCAACTGGATGATCTGTATCGTTTA
TGCTTTGGGCCAAGGCAACCGGGAATGGCCAGGTTAAAAAATCCTTTGCG
CAGGGCGTGCCTTCCTGCGTTCACCTTATTTTGGCTTTGTTGTTTTGATT
GCTGCATGTCGCTAGGCATATTCGTTGGCTCCATAAGGATGTGTTTCAAG
TCATTCATAGGACATATGGGTCGCTTTGTTTTACCCTTCCCGGAGAAAGG
AGGTGCTGTGGAAGTTTTTTCCCTCGTCGAAATGATGATGAGCCTCGTGT
GTGCCGTCGTTCTCTTGTCCCCATCTCTTCCTCTTCTACTTCCACCACCC
TAAGATACCCAACGAAGGAGTTGATGAAGGAATTGTTCAACAGCGTGGCG
AAGTACTGGCAGGAGCACAACCACGGGAAGGAGGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig727:79769..80204+

>mRNA_P-littoralis_Contig727.27.1 ID=mRNA_P-littoralis_Contig727.27.1|Name=mRNA_P-littoralis_Contig727.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig727:79769..80204+ (Pylaiella littoralis U1_48)
ATGACCAAGGGTCAACTGGATGATCTGTATCGTTTATGCTTTGGGCCAAG
GCAACCGGGAATGGCCAGGTTAAAAAATCCTTTGCGCAGGGCGTGCCTTC
CTGCGTTCACCTTATTTTGGCTTTGTTGTTTTGATTGCTGCATGTCGCTA
GGCATATTCGTTGGCTCCATAAGGATGTGTTTCAAGTCATTCATAGGACA
TATGGGTCGCTTTGTTTTACCCTTCCCGGAGAAAGGAGGTGCTGTGGAAG
TTTTTTCCCTCGTCGAAATGATGATGAGCCTCGTGTGTGCCGTCGTTCTC
TTGTCCCCATCTCTTCCTCTTCTACTTCCACCACCCTAA
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