mRNA_P-littoralis_Contig727.57.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig727.57.1
Unique NamemRNA_P-littoralis_Contig727.57.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig727.57.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig727contigP-littoralis_Contig727:126870..127440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791507.947744-CDS-P-littoralis_Contig727:126869..1269501680791507.947744-CDS-P-littoralis_Contig727:126869..126950Pylaiella littoralis U1_48CDSP-littoralis_Contig727 126870..126950 -
1680791507.959232-CDS-P-littoralis_Contig727:127356..1274311680791507.959232-CDS-P-littoralis_Contig727:127356..127431Pylaiella littoralis U1_48CDSP-littoralis_Contig727 127357..127431 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791507.9720464-UTR-P-littoralis_Contig727:127431..1274401680791507.9720464-UTR-P-littoralis_Contig727:127431..127440Pylaiella littoralis U1_48UTRP-littoralis_Contig727 127432..127440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig727.57.1prot_P-littoralis_Contig727.57.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig727 126870..127431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig727.57.1

>prot_P-littoralis_Contig727.57.1 ID=prot_P-littoralis_Contig727.57.1|Name=mRNA_P-littoralis_Contig727.57.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=52bp
MNGPERGTRTTDSLVKFAIPNFLLLNPGACWTKFGTLKTEYTKGTQAQFD
M*
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mRNA from alignment at P-littoralis_Contig727:126870..127440-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig727.57.1 ID=mRNA_P-littoralis_Contig727.57.1|Name=mRNA_P-littoralis_Contig727.57.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=571bp|location=Sequence derived from alignment at P-littoralis_Contig727:126870..127440- (Pylaiella littoralis U1_48)
GCAAAGCAGATGAACGGGCCAGAGCGGGGGACAAGAACGACGGACTCCCT
CGTCAAGTTCGCGATCCCGAACTTCCTCTTGTTGGTGAAGGAGGCGGCGC
ATGATCTCGATTTGCCCCTACCGTTGGACCTCGACGAGAAGATCAACTAC
ACTACCTTGGGCACAGGTACATAGGATGAAAGGGTTGGGGTTGTGGCGAC
AGGGCGTGTGACAGTTTTACCGCGGGAGAGTGTTGTCCGGGCGCCCGAGC
ACCTTCCGCTGATGTTGCTCAGTTCACATAAAAGCGCGGTGATGCCACAT
ATCCTGTCTATGTGCTACTGCTGTAGAATGAAACATGCGTAAGTTAAACG
TGTCGGACTTGTCCTGAAATTGTGAATCGATCCCACCATGTTGTTTAAAA
AAGTCCTTCGGCGCGTCGATAACCCGTTCCCCTCTACGATTCCTTTCGTC
TATCTGTACACGGGCAAAACCCATACTCACTTTCACCCAGAATCCAGGTG
CATGCTGGACGAAATTTGGGACTCTCAAGACCGAGTACACCAAAGGGACT
CAGGCGCAGTTCGATATGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig727:126870..127440-

>mRNA_P-littoralis_Contig727.57.1 ID=mRNA_P-littoralis_Contig727.57.1|Name=mRNA_P-littoralis_Contig727.57.1|organism=Pylaiella littoralis U1_48|type=CDS|length=156bp|location=Sequence derived from alignment at P-littoralis_Contig727:126870..127440- (Pylaiella littoralis U1_48)
ATGAACGGGCCAGAGCGGGGGACAAGAACGACGGACTCCCTCGTCAAGTT
CGCGATCCCGAACTTCCTCTTGTTGAATCCAGGTGCATGCTGGACGAAAT
TTGGGACTCTCAAGACCGAGTACACCAAAGGGACTCAGGCGCAGTTCGAT
ATGTGA
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