mRNA_P-littoralis_Contig727.53.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig727.53.1
Unique NamemRNA_P-littoralis_Contig727.53.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig727.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig727contigP-littoralis_Contig727:124483..125727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size242
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size126
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791507.8696973-UTR-P-littoralis_Contig727:124482..1245841680791507.8696973-UTR-P-littoralis_Contig727:124482..124584Pylaiella littoralis U1_48UTRP-littoralis_Contig727 124483..124584 -
1680791507.90934-UTR-P-littoralis_Contig727:125713..1257271680791507.90934-UTR-P-littoralis_Contig727:125713..125727Pylaiella littoralis U1_48UTRP-littoralis_Contig727 125714..125727 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791507.8839273-CDS-P-littoralis_Contig727:124584..1246651680791507.8839273-CDS-P-littoralis_Contig727:124584..124665Pylaiella littoralis U1_48CDSP-littoralis_Contig727 124585..124665 -
1680791507.8981974-CDS-P-littoralis_Contig727:125668..1257131680791507.8981974-CDS-P-littoralis_Contig727:125668..125713Pylaiella littoralis U1_48CDSP-littoralis_Contig727 125669..125713 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig727.53.1prot_P-littoralis_Contig727.53.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig727 124585..125713 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig727.53.1

>prot_P-littoralis_Contig727.53.1 ID=prot_P-littoralis_Contig727.53.1|Name=mRNA_P-littoralis_Contig727.53.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=42bp
MPLNKDCQIGTFKDVTSGSSRQVLDYADVLDGCDFMVDVEE*
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mRNA from alignment at P-littoralis_Contig727:124483..125727-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig727.53.1 ID=mRNA_P-littoralis_Contig727.53.1|Name=mRNA_P-littoralis_Contig727.53.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1245bp|location=Sequence derived from alignment at P-littoralis_Contig727:124483..125727- (Pylaiella littoralis U1_48)
GGACCAAAGCCAACATGCCACTCAACAAGGATTGCCAGATTGGCACTTTT
AAAGACGTGGTGCGTATCGGAACTGCGAATTGTACATTTTTACGGCCCCC
TCATCGTGACTCTTGAAAGGAGGTTATTGCTTCGAACTAAACACGAAGGT
GATCGTTCGTGGTGTTGTTCGTGTTGTGGGTTTGACGCATGTGTGGAGAA
AATAACGGATGGAACGCATTCAGGGGCAAGCTTGATATCTGTGATCAACC
CGTTCGGCGTATAGCGTGGTGTACTTCGGTACGCCGTTGCCTTCACGTGT
ATACTGAACGTCAATTTGTACACAGATGTGTGCGACAAAGATGGTGCGAG
GTTTCCACCAGAAAAATGACTTTAAATAATTGCGTCAAATTCTTGATCTT
CCTCGACGGTTGCAATTATTGCTTTTCCGCTTGTAACGCTTGGCGGTGTT
AAACACCACAGACCACGAATAAAAAGAGGAGACCCAGAGACGAAGAGTCT
GGTGTTTAGTCTAGAAAATAACGTCGTTTGGAGCGCTGGTGGACTTATTT
TTCTTCTGGTTGACCACCGAAAAACAGCAACACACACAACAGCAGACAGC
ACGGCACATGCCGCAGTGGTACAGCTCTGTATATTGGGTGTGTGGGTGCC
TGCGTATCGCACACACAGATTGATGCTTCTGCGAAGCATACATTTATGTT
GTTGAGAGGAGGCACAGCAGCAGCAACAAAACACAAAACAACAGCAGTCG
GAAGAAGAGGCGATTGCGCCACACCTCCCATAAGCCGAGGTCATGTCGCA
TATCACTCACGCACAAACAGGGGCGACAGAGTAGACAGCACAGTGCAGCA
GTATATCACAGGAGCCGCGCAACTGTACGGTGCAGCGGCAGGTGCAGCAG
TGAAGCAGTTAAGTGTTTGTGTGCCAAGAAGTTGTAATTAATTCTCAGGT
GTTATCCCATGTCTCCGTGACCGCAGCTTCATGCAAACGGGAGCGTCACC
AACATGATAACTCATGACTCCCACCGCTCGTTCCACCCCTTCCGCAATTC
CCTGTTGCGCAGACCTCAGGAAGTTCAAGGCAGGTCTTGGATTATGCGGA
CGTGCTTGACGGGTGCGATTTCATGGTCGATGTCGAGGAATAGAGGAAGG
AGGATGTAGGAGTTACCTCAAGCAGTGGCGTTGGCAGTGGATCAGCGGCG
GGTCTCGTCACCGGTGGCAATGCTGGGACTGCGGGTAGTGCTAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig727:124483..125727-

>mRNA_P-littoralis_Contig727.53.1 ID=mRNA_P-littoralis_Contig727.53.1|Name=mRNA_P-littoralis_Contig727.53.1|organism=Pylaiella littoralis U1_48|type=CDS|length=126bp|location=Sequence derived from alignment at P-littoralis_Contig727:124483..125727- (Pylaiella littoralis U1_48)
ATGCCACTCAACAAGGATTGCCAGATTGGCACTTTTAAAGACGTGACCTC
AGGAAGTTCAAGGCAGGTCTTGGATTATGCGGACGTGCTTGACGGGTGCG
ATTTCATGGTCGATGTCGAGGAATAG
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