mRNA_P-littoralis_Contig726.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig726.31.1
Unique NamemRNA_P-littoralis_Contig726.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig726.31.1 vs. uniprot
Match: A0A6H5KAW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW6_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 4.290e-13
Identity = 36/78 (46.15%), Postives = 51/78 (65.38%), Query Frame = 2 
Query:   50 TRRSTTLPWAQNPGACWTKFGTLKTEYTKGTQAQFDMGPQSEDDFESGKTSEDYMMKLLQYMWTQSTEYKTAAAQDLT 283
            T +   + +   P ACWTK+ T+K +YTK  Q  +D GPQ+  +FESG++SEDY  KL++ +W +S E K A A DLT
Sbjct:  193 TGKKPAVSFKDKPRACWTKWETIKRDYTKEIQIIYDEGPQTASEFESGQSSEDYAAKLIEEVWQRSDECKKAEAVDLT 270
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig726.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAW6_9PHAE4.290e-1346.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig726contigP-littoralis_Contig726:136066..137614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size331
Hectar predicted targeting categoryother localisation
Exons3
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791507.6815636-CDS-P-littoralis_Contig726:136065..1362371680791507.6815636-CDS-P-littoralis_Contig726:136065..136237Pylaiella littoralis U1_48CDSP-littoralis_Contig726 136066..136237 -
1680791507.6917906-CDS-P-littoralis_Contig726:137131..1372081680791507.6917906-CDS-P-littoralis_Contig726:137131..137208Pylaiella littoralis U1_48CDSP-littoralis_Contig726 137132..137208 -
1680791507.7121332-CDS-P-littoralis_Contig726:137532..1375981680791507.7121332-CDS-P-littoralis_Contig726:137532..137598Pylaiella littoralis U1_48CDSP-littoralis_Contig726 137533..137598 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791507.7240417-UTR-P-littoralis_Contig726:137598..1376141680791507.7240417-UTR-P-littoralis_Contig726:137598..137614Pylaiella littoralis U1_48UTRP-littoralis_Contig726 137599..137614 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig726.31.1prot_P-littoralis_Contig726.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig726 136066..137598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig726.31.1

>prot_P-littoralis_Contig726.31.1 ID=prot_P-littoralis_Contig726.31.1|Name=mRNA_P-littoralis_Contig726.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
MISICPYRWTSTRRSTTLPWAQNPGACWTKFGTLKTEYTKGTQAQFDMGP
QSEDDFESGKTSEDYMMKLLQYMWTQSTEYKTAAAQDLTGDESGGAATGA
GTTVV
back to top

mRNA from alignment at P-littoralis_Contig726:136066..137614-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig726.31.1 ID=mRNA_P-littoralis_Contig726.31.1|Name=mRNA_P-littoralis_Contig726.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1549bp|location=Sequence derived from alignment at P-littoralis_Contig726:136066..137614- (Pylaiella littoralis U1_48)
GTGAAGGAGGCGGCGCATGATCTCGATTTGCCCCTACCGTTGGACCTCGA
CGAGAAGATCAACTACACTACCTTGGGCACAGGTACATATGATGAAAGGG
TTGGGGTTGTGGCGACAGGGCGTGTGACAGTTTTACCGCGGGAGAGTGTT
GTCCGGGCGCCCGAGCACCTTCCGCTGATGTTGCTCAGTTCACATAATAG
CGCGGCGATGCCACATATCCTATCTAAGTGCTACTGCTGTAGAATGAAAC
ATGCGTAAGTTAAATGTGTCGGACTTGTCCTGAAATTGTGAATCGATCCC
ACCATGTTGTTTAGAAAAGTCCTTCGGCGCGTCGATTACCCGTTCCCCTC
TACGATTCCTTTCGTCTATCTGTACACGGGCAAAACCCATACTCACTTTC
ACCCAGAATCCAGGTGCATGCTGGACGAAATTTGGGACTCTCAAGACCGA
GTACACCAAAGGGACTCAGGCGCAGTTCGATATGTGAGAACAAGGCCTTG
CGGGTTGTGTGTAATCGTTCTAGACTTTTGAAGTATCCTGAGATTGCTGT
GAAAGTGTGACGTGAGATCAATACAAGAGCTGTTGTGAGATGAGTATTAC
TGCTGTTCCTTTCACGTTCACTCCGGCAGACGTATGGTGGTATCAAACCT
TAGGTGATTTTTGCCACGTACACATATGTGCTTTGAACCTTGTACACAAC
TCACACAGCCAGCAGCAGTAGTATGCCTCCACCGCAGCACGTTATACACA
GGTTCAACAAAGGCAGTAAACGTACTCACAACATCCTAACCTTATCCTTG
CCCCGTTACAGCGGTAATAGCACGCGACAGCAAGCAGCAGCAGCATAGCG
GGAGCAGTAGTACAGTACAGCGGTCGAAACAACAAAGGAAAAAGGACGAC
AGAACATCGGTGCACAACGTTTGCACCAAGGCGCTACCGCCGCTGTAGCT
GCGTTTGTAAAGGCGAACTGGCCGTCAGGGTTCTCACGTACCGCAAGTTG
CAACGGCGATAGCTTTGTCTGTGAGCGAGTCGCGGGCTACGGAAAATGCC
GCATAGCTTAGCAGCAGACTCAGCAGAAGTAACACCGCTCGTACACGTTC
ACGCAGCCGACAGTTGCACAAGAAATTGCTGCCACAAGCATCACTACTGA
AGCGCCTGATGTGCTGCTGTATAGTCCTTGAAGAGGAGGTCTTCCGTGAT
GGAATATTTGATGTACAGTTCTTGTGCTCAAGGGATCGAAAACCTGTTCA
CCCAAAAACATGGGCAGCTCCAACCTCACCCTCTGCACATGTACTGTAAA
AAGTATTTGGCGTTGTTCACTGAAGTTCTCACCATTCATACCCTGCGTTG
TGCACACCCGTGGTTTTGTCGGCGCAGGGGGCCGCAATCTGAGGATGACT
TCGAATCGGGAAAAACGAGTGAAGATTACATGATGAAGCTTCTCCAGTAC
ATGTGGACCCAATCCACCGAATACAAGACGGCGGCCGCCCAAGATCTCAC
AGGCGACGAGTCTGGTGGGGCCGCGACTGGAGCGGGAACGACGGTGGTC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig726:136066..137614-

>mRNA_P-littoralis_Contig726.31.1 ID=mRNA_P-littoralis_Contig726.31.1|Name=mRNA_P-littoralis_Contig726.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig726:136066..137614- (Pylaiella littoralis U1_48)
ATGATCTCGATTTGCCCCTACCGTTGGACCTCGACGAGAAGATCAACTAC
ACTACCTTGGGCACAGAATCCAGGTGCATGCTGGACGAAATTTGGGACTC
TCAAGACCGAGTACACCAAAGGGACTCAGGCGCAGTTCGATATGGGGCCG
CAATCTGAGGATGACTTCGAATCGGGAAAAACGAGTGAAGATTACATGAT
GAAGCTTCTCCAGTACATGTGGACCCAATCCACCGAATACAAGACGGCGG
CCGCCCAAGATCTCACAGGCGACGAGTCTGGTGGGGCCGCGACTGGAGCG
GGAACGACGGTGGTC
back to top