mRNA_P-littoralis_Contig726.28.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig726.28.1
Unique NamemRNA_P-littoralis_Contig726.28.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig726.28.1 vs. uniprot
Match: D7FV02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV02_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 3.190e-10
Identity = 41/120 (34.17%), Postives = 59/120 (49.17%), Query Frame = 2 
Query:  197 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDK------------LDTGSNPLSSPAAMAXXXXXXXXXXXXXXXXXXXXTEAAAKAEADRLRRAQKDKENMALMKE 520
            ++P+ + YP+L++AC WS WSGNTPSEWK+L AS G      + DK            + T  NP+ SP AM                       A  K E +++++  K+KEN+AL  E
Sbjct:  285 DIPDDYYYPYLLLACPWSSWSGNTPSEWKHLAASSGPRNRASKGDKGNSNGNDNSNEVVITDDNPIGSPRAMGLMNANGDAVSRRQYF-------ANIKKEKEQVKKDAKEKENVALRNE 397
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BLAST of mRNA_P-littoralis_Contig726.28.1 vs. uniprot
Match: A0A6H5KGF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF1_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.390e-9
Identity = 40/109 (36.70%), Postives = 54/109 (49.54%), Query Frame = 2 
Query:  197 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMAXXXXXXXXXXXXXXXXXXXXTEAAAKAEADRLRRAQKDKENMALMKET 523
            E+PE W++P L++  A+SPWSG  PSEWK+L +S G  +  K  D      NP+ SPA M+                      AA K E ++ R+A  DKE     KET
Sbjct:  117 EVPEWWIFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGGDVNVDSENPVCSPAVMSRLDPNGDALSRRQHF-------AAIKREKEQERKATADKELQESRKET 218
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BLAST of mRNA_P-littoralis_Contig726.28.1 vs. uniprot
Match: A0A6H5JTM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTM3_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.560e-8
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 2 
Query:  200 MPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMA 379
            +PE W++P L++  A+SPWSG  PSEWK+L +S G  +  K  D      NP+ SPA M+
Sbjct:  137 VPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGADVTVDSENPVCSPAVMS 196
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BLAST of mRNA_P-littoralis_Contig726.28.1 vs. uniprot
Match: A0A6H5KDD8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD8_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 4.120e-8
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 2 
Query:  197 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSP 367
            E+PE W++P L++  A+SPWSG  PSEWK+L +S G     K  D      NP+SSP
Sbjct:  117 EVPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSIKRKGGDVTVDSDNPVSSP 173
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BLAST of mRNA_P-littoralis_Contig726.28.1 vs. uniprot
Match: A0A6H5K7S4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7S4_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 6.060e-8
Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 2 
Query:  197 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPA 370
            E+PE W++P L++  A+SPWSG  PSEWK+L +S G  +  K  D      NP+ SPA
Sbjct:  105 EVPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGPSKKRKGGDVTVDSENPVCSPA 162
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BLAST of mRNA_P-littoralis_Contig726.28.1 vs. uniprot
Match: A0A6H5KJW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW8_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.030e-7
Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 2 
Query:  197 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMA 379
            E+PE W++P L++  A+SPWSG  PSEWK+L +S G  +     D      NP+ SPA M+
Sbjct:  120 EVPEWWVFPFLLLTAAYSPWSGQAPSEWKHLDSSDGLSKKRTGGDVTVDSENPVYSPAVMS 180
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BLAST of mRNA_P-littoralis_Contig726.28.1 vs. uniprot
Match: A0A6H5KVE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVE3_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 2.320e-7
Identity = 27/61 (44.26%), Postives = 36/61 (59.02%), Query Frame = 2 
Query:  197 EMPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGSNPLSSPAAMA 379
            E+ E W++P L+   A+SPWSG  PSEWK+L +S G     K  D      NP+ SPA M+
Sbjct:   31 EVSEWWVFPFLLHTAAYSPWSGQAPSEWKHLDSSDGPSIKRKGGDVTVDSENPVCSPAVMS 91
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig726.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FV02_ECTSI3.190e-1034.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGF1_9PHAE2.390e-936.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTM3_9PHAE3.560e-845.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDD8_9PHAE4.120e-847.37Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K7S4_9PHAE6.060e-846.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJW8_9PHAE1.030e-744.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVE3_9PHAE2.320e-744.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig726contigP-littoralis_Contig726:134398..134923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size527
Hectar predicted targeting categoryother localisation
Exons1
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791507.6350403-CDS-P-littoralis_Contig726:134397..1347241680791507.6350403-CDS-P-littoralis_Contig726:134397..134724Pylaiella littoralis U1_48CDSP-littoralis_Contig726 134398..134724 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791507.6482809-UTR-P-littoralis_Contig726:134724..1349231680791507.6482809-UTR-P-littoralis_Contig726:134724..134923Pylaiella littoralis U1_48UTRP-littoralis_Contig726 134725..134923 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig726.28.1prot_P-littoralis_Contig726.28.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig726 134398..134724 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig726.28.1

>prot_P-littoralis_Contig726.28.1 ID=prot_P-littoralis_Contig726.28.1|Name=mRNA_P-littoralis_Contig726.28.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=109bp
MPEGWLYPHLIMACAWSPWSGNTPSEWKNLCASGGKPEALKEEDKLDTGS
NPLSSPAAMAAAASARKMLNNNGDSSSRRQTEAAAKAEADRLRRAQKDKE
NMALMKETE
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mRNA from alignment at P-littoralis_Contig726:134398..134923-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig726.28.1 ID=mRNA_P-littoralis_Contig726.28.1|Name=mRNA_P-littoralis_Contig726.28.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=526bp|location=Sequence derived from alignment at P-littoralis_Contig726:134398..134923- (Pylaiella littoralis U1_48)
GACCTCAGGAAGTTCAAGGCAGGTCTGGGATTGTGCGGACGTGCTTGACG
GGTGCGATTTCATGGTCGATGTCGAGGAATAGAGGAAGGAGGATGTAGGC
GTTACCTCAAGCAGTGGCGTTGGCAGTGGATCAGCGGCGGGTCTCGTCAC
CGGTGGCAATGCTGGGACTGCGGGTAGTGCTAGGAAGAAGTTGCCGGAGA
TGCCTGAGGGGTGGTTGTACCCGCATCTCATTATGGCATGTGCCTGGTCC
CCCTGGAGCGGGAACACCCCGTCCGAGTGGAAAAACCTGTGTGCGTCCGG
CGGGAAACCCGAGGCGTTAAAGGAAGAAGATAAGCTGGACACGGGGTCAA
ACCCACTCTCCAGCCCCGCAGCGATGGCCGCGGCCGCATCGGCGCGCAAA
ATGCTCAACAACAATGGTGATTCCTCGAGTCGTCGCCAGACCGAAGCAGC
AGCGAAAGCGGAGGCTGATCGGCTTCGCAGGGCCCAGAAGGACAAGGAGA
ACATGGCGCTCATGAAAGAGACAGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig726:134398..134923-

>mRNA_P-littoralis_Contig726.28.1 ID=mRNA_P-littoralis_Contig726.28.1|Name=mRNA_P-littoralis_Contig726.28.1|organism=Pylaiella littoralis U1_48|type=CDS|length=327bp|location=Sequence derived from alignment at P-littoralis_Contig726:134398..134923- (Pylaiella littoralis U1_48)
ATGCCTGAGGGGTGGTTGTACCCGCATCTCATTATGGCATGTGCCTGGTC
CCCCTGGAGCGGGAACACCCCGTCCGAGTGGAAAAACCTGTGTGCGTCCG
GCGGGAAACCCGAGGCGTTAAAGGAAGAAGATAAGCTGGACACGGGGTCA
AACCCACTCTCCAGCCCCGCAGCGATGGCCGCGGCCGCATCGGCGCGCAA
AATGCTCAACAACAATGGTGATTCCTCGAGTCGTCGCCAGACCGAAGCAG
CAGCGAAAGCGGAGGCTGATCGGCTTCGCAGGGCCCAGAAGGACAAGGAG
AACATGGCGCTCATGAAAGAGACAGAG
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