mRNA_P-littoralis_Contig1.135.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.135.1
Unique NamemRNA_P-littoralis_Contig1.135.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:807307..808275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size969
Hectar predicted targeting categorysignal peptide
Exons1
Cds size549
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789308.9753513-UTR-P-littoralis_Contig1:807306..8073081680789308.9753513-UTR-P-littoralis_Contig1:807306..807308Pylaiella littoralis U1_48UTRP-littoralis_Contig1 807307..807308 -
1680789308.9972289-UTR-P-littoralis_Contig1:807857..8082751680789308.9972289-UTR-P-littoralis_Contig1:807857..808275Pylaiella littoralis U1_48UTRP-littoralis_Contig1 807858..808275 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789308.985137-CDS-P-littoralis_Contig1:807308..8078571680789308.985137-CDS-P-littoralis_Contig1:807308..807857Pylaiella littoralis U1_48CDSP-littoralis_Contig1 807309..807857 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.135.1prot_P-littoralis_Contig1.135.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 807309..807857 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.135.1

>prot_P-littoralis_Contig1.135.1 ID=prot_P-littoralis_Contig1.135.1|Name=mRNA_P-littoralis_Contig1.135.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=183bp
MGELLREIGKGESLIVWIGLSYCCFVVDAVSVGGDTLSCSVCEHAVLRCL
LDALKRTQWQRGVACGRSTPPLFDHDSCGTCPFMCTECVCCHPIYSGHPS
TPFRCEVGASAGVTWKVTRAFSLFILFYSTNLPPAVRASGFSCESGTAIP
SLYLLTSNSLPTVKSEETLSERIEPATSQLAG*
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mRNA from alignment at P-littoralis_Contig1:807307..808275-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.135.1 ID=mRNA_P-littoralis_Contig1.135.1|Name=mRNA_P-littoralis_Contig1.135.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=969bp|location=Sequence derived from alignment at P-littoralis_Contig1:807307..808275- (Pylaiella littoralis U1_48)
GGGGGAGCGAGGGGGAGAGCAAAGTGTAGTCTCCTTTGTAAGCGTTTTGC
CTCCAAAAGATCTTTGTCCATATCATACTCCGTACTTGGTTTAGTTTCTA
TAAGAAGCGCTACGAATTCGGCCCCTTTTAGCAAGGTCTGCCACAACAAG
GCGAAAGGGAAGGGTAGGTAGGGGGAGTGTAGCGGGCTCCTTGTTTTTTC
TCGTAAACACCCCCTCTTCACTACGAGGGGTAGACGGAGGAACGGTAGGT
TGGTATCGTCAGTTGGCTCCGTTGCTCTTCCCGCTCTGCGTCCAAGTACG
TAGTACGAAGCGGGGGGAAGGTGGCAAGGTGGGGGGTTAGCTCCGCGTGT
GCCTTGAAGAAGCTTCGCAGTTTTTGAGCTTTTATGTTTACAAGATCTTG
AGGGAGAAACGGGTCGATATGGGTGAGCTCCTCAGAGAGATTGGGAAGGG
GGAGTCGTTGATTGTGTGGATTGGCCTCTCGTATTGTTGTTTTGTCGTTG
ACGCTGTTTCAGTTGGTGGAGACACGTTGTCTTGCAGTGTTTGCGAGCAT
GCCGTCTTGCGATGTTTGTTGGACGCTCTTAAGAGAACCCAATGGCAGCG
TGGAGTCGCATGCGGCCGTTCAACGCCCCCCCTGTTTGACCATGACTCTT
GCGGTACATGCCCCTTTATGTGTACAGAGTGTGTGTGTTGTCATCCCATT
TATTCTGGGCACCCATCTACACCCTTTCGGTGTGAGGTGGGTGCATCAGC
CGGGGTCACATGGAAGGTCACACGAGCTTTTTCACTTTTTATTTTGTTTT
ATTCCACAAACCTTCCTCCTGCGGTACGTGCCTCTGGTTTTTCATGCGAG
TCTGGTACAGCAATCCCTTCCCTCTATTTACTCACGAGTAATTCGCTTCC
CACTGTAAAGTCGGAAGAAACGCTCTCAGAGAGAATCGAACCCGCGACCT
CACAACTAGCAGGCTGACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1:807307..808275-

>mRNA_P-littoralis_Contig1.135.1 ID=mRNA_P-littoralis_Contig1.135.1|Name=mRNA_P-littoralis_Contig1.135.1|organism=Pylaiella littoralis U1_48|type=CDS|length=549bp|location=Sequence derived from alignment at P-littoralis_Contig1:807307..808275- (Pylaiella littoralis U1_48)
ATGGGTGAGCTCCTCAGAGAGATTGGGAAGGGGGAGTCGTTGATTGTGTG
GATTGGCCTCTCGTATTGTTGTTTTGTCGTTGACGCTGTTTCAGTTGGTG
GAGACACGTTGTCTTGCAGTGTTTGCGAGCATGCCGTCTTGCGATGTTTG
TTGGACGCTCTTAAGAGAACCCAATGGCAGCGTGGAGTCGCATGCGGCCG
TTCAACGCCCCCCCTGTTTGACCATGACTCTTGCGGTACATGCCCCTTTA
TGTGTACAGAGTGTGTGTGTTGTCATCCCATTTATTCTGGGCACCCATCT
ACACCCTTTCGGTGTGAGGTGGGTGCATCAGCCGGGGTCACATGGAAGGT
CACACGAGCTTTTTCACTTTTTATTTTGTTTTATTCCACAAACCTTCCTC
CTGCGGTACGTGCCTCTGGTTTTTCATGCGAGTCTGGTACAGCAATCCCT
TCCCTCTATTTACTCACGAGTAATTCGCTTCCCACTGTAAAGTCGGAAGA
AACGCTCTCAGAGAGAATCGAACCCGCGACCTCACAACTAGCAGGCTGA
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