mRNA_P-littoralis_Contig1183.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig1183.4.1
Unique Name	mRNA_P-littoralis_Contig1183.4.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

[Close]

BLAST of mRNA_P-littoralis_Contig1183.4.1 vs. uniprot
Match: D8LRF1_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF1_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 6.780e-32
Identity = 62/86 (72.09%), Postives = 71/86 (82.56%), Query Frame = -1

Query:  458 WLEESGNLDKWESNSLTASDRRVFITQWVGAARETIDKRPEFRFRLFEKCGMAMAVDGSGDDRINVEGLDKPNSFWDAEDSRDHEG 715
            WLE++ N+++WESNSLTASDRRV ITQWVGAA E +D R E+RFRLFEKCGMAM VDGSGDDRI +EGLDKP +F    DS D EG
Sbjct:  506 WLEQADNIERWESNSLTASDRRVLITQWVGAAMEELDSREEYRFRLFEKCGMAMTVDGSGDDRITLEGLDKPYTFAGDGDSSDDEG 591

[Close]

BLAST of mRNA_P-littoralis_Contig1183.4.1 vs. uniprot
Match: A0A6H5KL79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL79_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.990e-30
Identity = 58/102 (56.86%), Postives = 76/102 (74.51%), Query Frame = -1

Query:  473 AR*CKTLPEL*SWETTGQ---WLEESGNLDKWESNSLTASDRRVFITQWVGAARETIDKRPEFRFRLFEKCGMAMAVDGSGDDRINVEGLDKPNSFWDAEDS 769
            A+ C +L      E T +   WLE+S NL++WE+ SLTASDRRV ITQW+GAA   ++++  +R+R+FEKCGMAM VDGSGDDRI +EGLDKP +F + EDS
Sbjct:   32 AKHCNSLAWYGPSECTDEMDIWLEQSHNLERWETASLTASDRRVLITQWMGAAMARLNRQQTYRYRIFEKCGMAMTVDGSGDDRITLEGLDKPYTFANDEDS 133

[Close]

BLAST of mRNA_P-littoralis_Contig1183.4.1 vs. uniprot
Match: A0A6H5JXP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXP4_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.320e-30
Identity = 56/85 (65.88%), Postives = 69/85 (81.18%), Query Frame = -1

Query:  461 WLEESGNLDKWESNSLTASDRRVFITQWVGAARETIDKRPEFRFRLFEKCGMAMAVDGSGDDRINVEGLDKPNSFWDAEDSRDHE 715
            WLE+S NL++WE+ SLTAS+RRV ITQW+GAA   ++ +  +R+RLFEKCGMAM VDGSGDDRI +EGLDKP +F D EDS D E
Sbjct:   56 WLEQSDNLERWETASLTASNRRVLITQWMGAAMARLNIQQAYRYRLFEKCGMAMTVDGSGDDRITLEGLDKPYTFADGEDSSDDE 140

[Close]

BLAST of mRNA_P-littoralis_Contig1183.4.1 vs. uniprot
Match: A0A6H5JEK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEK5_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 2.820e-30
Identity = 54/86 (62.79%), Postives = 68/86 (79.07%), Query Frame = -1

Query:  458 WLEESGNLDKWESNSLTASDRRVFITQWVGAARETIDKRPEFRFRLFEKCGMAMAVDGSGDDRINVEGLDKPNSFWDAEDSRDHEG 715
            WLE+S NL++WE+ +LTASDRRV IT+W+GAA   ++ +  FRFRLFEKCGM M VDGSGDDRI +EGLDKP +F + ED  + EG
Sbjct:    4 WLEQSDNLERWETAALTASDRRVLITRWIGAAMARLNSQQAFRFRLFEKCGMGMTVDGSGDDRITLEGLDKPYTFANDEDCSEDEG 89

[Close]

BLAST of mRNA_P-littoralis_Contig1183.4.1 vs. uniprot
Match: A0A6H5K3B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3B4_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 7.000e-30
Identity = 61/106 (57.55%), Postives = 76/106 (71.70%), Query Frame = -1

Query:  461 AR*CKTLPEL*SWETTGQ---WLEESGNLDKWESNSLTASDRRVFITQWVGAARETIDKRPEFRFRLFEKCGMAMAVDGSGDDRINVEGLDKPNSFWDAEDSRDHE 769
            A+ C TL      E T +   WLE+S NL++WE+ SLTASDRRV ITQW+GAA   ++ +  +R+RLFEKCGMAM VDGSGDDRI + GLDKP +F + EDS D E
Sbjct:   32 AKHCNTLAWYGPSECTDEIDKWLEQSANLERWETASLTASDRRVLITQWMGAAMARLNSQQAYRYRLFEKCGMAMTVDGSGDDRITLAGLDKPYTFANDEDSSDDE 137

[Close]

BLAST of mRNA_P-littoralis_Contig1183.4.1 vs. uniprot
Match: A0A6H5KZ23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ23_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 1.090e-29
Identity = 55/85 (64.71%), Postives = 69/85 (81.18%), Query Frame = -1

Query:  461 WLEESGNLDKWESNSLTASDRRVFITQWVGAARETIDKRPEFRFRLFEKCGMAMAVDGSGDDRINVEGLDKPNSFWDAEDSRDHE 715
            WLE+SGNL++WE+ SLTASDRRV + QW+GAA   ++ +  +R+RLFEKCGMAM VDGSGDDRI +EGLDKP +F + EDS D E
Sbjct:   72 WLEQSGNLERWETASLTASDRRVLVIQWMGAAMARLNSQQAYRYRLFEKCGMAMTVDGSGDDRITLEGLDKPYTFANDEDSSDDE 156

[Close]

BLAST of mRNA_P-littoralis_Contig1183.4.1 vs. uniprot
Match: A0A6H5K2X8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2X8_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 2.700e-29
Identity = 55/85 (64.71%), Postives = 67/85 (78.82%), Query Frame = -1

Query:  461 WLEESGNLDKWESNSLTASDRRVFITQWVGAARETIDKRPEFRFRLFEKCGMAMAVDGSGDDRINVEGLDKPNSFWDAEDSRDHE 715
            WLE+S NL++WE+ SLTASDRRV ITQW+GAA   +D +  +R+RLF+KCGM M VDGSGDDRI +EGLDKP +F   EDS D E
Sbjct:   72 WLEQSDNLERWETASLTASDRRVLITQWMGAAMARLDSQQAYRYRLFKKCGMVMTVDGSGDDRITLEGLDKPYTFAYDEDSSDGE 156

[Close]

BLAST of mRNA_P-littoralis_Contig1183.4.1 vs. uniprot
Match: A0A6H5KP10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP10_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 4.200e-29
Identity = 57/87 (65.52%), Postives = 69/87 (79.31%), Query Frame = -1

Query:  458 WLEESGNLDKWESNSLTASDRRVFITQWVGAARETIDKRPEFRFRLFEKCGMAMAVDGSGDDRINVEGLDKPNSFWDAED-SRDHEG 715
            WLE+S NL++WE+ +LTASDRRV ITQW+ AA   ++ +  FRFRLFEKCGMAM VDGSGDDRI +EGLDKP +F + ED S D EG
Sbjct:   57 WLEQSDNLERWETAALTASDRRVLITQWIEAAMARLNSQQAFRFRLFEKCGMAMTVDGSGDDRITLEGLDKPYTFANDEDCSEDEEG 143

[Close]

BLAST of mRNA_P-littoralis_Contig1183.4.1 vs. uniprot
Match: A0A6H5KE05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE05_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 4.320e-29
Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = -1

Query:  461 WLEESGNLDKWESNSLTASDRRVFITQWVGAARETIDKRPEFRFRLFEKCGMAMAVDGSGDDRINVEGLDKPNSFWDAEDSRDHE 715
            WLE+S NL++WE+ SLTASDRRV ITQW+GAA   ++ +  +R+RLFEKCGMAM V GSGDDRI +EGL+KP +F + E S D+E
Sbjct:    4 WLEQSDNLERWETASLTASDRRVLITQWMGAAMARLNSQQAYRYRLFEKCGMAMTVAGSGDDRITLEGLEKPYTFANDEGSSDNE 88

[Close]

BLAST of mRNA_P-littoralis_Contig1183.4.1 vs. uniprot
Match: A0A6H5K0Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Z3_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 5.430e-29
Identity = 57/85 (67.06%), Postives = 70/85 (82.35%), Query Frame = -1

Query:  461 WLEESGNLDKWESNSLTASDRRVFITQWVGAARETIDKRPEFRFRLFEKCGMAMAVDGSGDDRINVEGLDKPNSFWDAEDSRDHE 715
            WLE+S NL++WE+ SLTASDRRV ITQW+GAA   ++ +  +R+RLFEKCGMAM VDGSGDDRI +EGLDKPN+F + EDS D E
Sbjct:  798 WLEQSDNLERWETASLTASDRRVLITQWMGAAMARLNSQQAYRYRLFEKCGMAMTVDGSGDDRITLEGLDKPNTFANDEDSSDDE 882

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig1183.4.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig1183.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LRF1_ECTSI	6.780e-32	72.09	C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu...	[more]
A0A6H5KL79_9PHAE	1.990e-30	56.86	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JXP4_9PHAE	2.320e-30	65.88	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JEK5_9PHAE	2.820e-30	62.79	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K3B4_9PHAE	7.000e-30	57.55	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KZ23_9PHAE	1.090e-29	64.71	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K2X8_9PHAE	2.700e-29	64.71	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KP10_9PHAE	4.200e-29	65.52	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KE05_9PHAE	4.320e-29	62.35	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K0Z3_9PHAE	5.430e-29	67.06	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig1183	contig	P-littoralis_Contig1183:33372..34203 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	833
Hectar predicted targeting category	other localisation
Exons	1
Cds size	477

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789496.823669-UTR-P-littoralis_Contig1183:33371..33726	1680789496.823669-UTR-P-littoralis_Contig1183:33371..33726	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig1183 33372..33726 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789496.835868-CDS-P-littoralis_Contig1183:33726..34203	1680789496.835868-CDS-P-littoralis_Contig1183:33726..34203	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig1183 33727..34203 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig1183.4.1	prot_P-littoralis_Contig1183.4.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig1183 33727..34203 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig1183:33372..34203+
coding sequence from alignment at P-littoralis_Contig1183:33372..34203+

protein sequence of mRNA_P-littoralis_Contig1183.4.1

>prot_P-littoralis_Contig1183.4.1 ID=prot_P-littoralis_Contig1183.4.1|Name=mRNA_P-littoralis_Contig1183.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=159bp
MSPEAPPPEPVSPPSSILMSSWSTHPSLPVSDAPPLVVSRVFGIPKAVRL
VQSLHVDPVIAGAIHCHRHATLFKKAETKLRAFVDSFSGGSHPLRDEHTP
VRCCQRVAFPLVQVARFLEPLSSCFPTSEFRKRLASTGCTSSVSLAGKNQ
ASVLQCSER

mRNA from alignment at P-littoralis_Contig1183:33372..34203+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig1183.4.1 ID=mRNA_P-littoralis_Contig1183.4.1|Name=mRNA_P-littoralis_Contig1183.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=832bp|location=Sequence derived from alignment at P-littoralis_Contig1183:33372..34203+ (Pylaiella littoralis U1_48)
AACGAACTATGAAGAGCAGCGGGCTAAGAAACTTGATAAAAAAAACCGTC
CGGGATTTGCATGCCGCGTATCTCGTCCACCTGATCCGCGCTGTCATCTT
CGTCCAAAAGGGCGAGCTCATCGTTCTGGCTGTTGGGCGTGCCTGCTCAG
ATAGGCATCACGACACACGCCAAGTAGAGTGTTAAAACAACAAACAACAA
CGGCAATAAAGGCAGACAGCAGCAGCAGCAGCAAACCCAAACAACAATGA
CACGTAGCTAAAACAAACAGTAAACGCACGGACAAAATAATCAAGCTGGC
AACAATAATACTTGCGTCATCACTTTCGTCGGCAGAATCGTCGTACTCCC
GTCAGATGTCACCTGAGGCCCCACCACCCGAGCCCGTCTCTCCACCCTCC
TCAATACTCATGTCATCCTGGTCCACGCACCCGTCGCTGCCAGTCTCTGA
CGCCCCACCCCTCGTGGTCTCTAGAGTCTTCGGCATCCCAAAAGCTGTTC
GGCTTGTCCAGTCCCTCCACGTTGATCCTGTCATCGCCGGAGCCATCCAC
TGCCATCGCCATGCCACACTTTTCAAAAAGGCGGAAACGAAACTCCGGGC
GTTTGTCGATAGTTTCTCTGGCGGCTCCCACCCATTGCGTGATGAACACA
CGCCGGTCAGATGCTGTCAACGAGTTGCTTTCCCACTTGTCCAAGTTGCC
CGATTCCTCGAGCCATTGTCCAGTTGTTTCCCAACTTCAGAGTTCAGGAA
GCGTCTTGCATCAACGGGCTGCACCTCTTCGGTGTCATTGGCTGGAAAAA
ATCAGGCGAGTGTGTTGCAGTGCTCTGAAAGG

Coding sequence (CDS) from alignment at P-littoralis_Contig1183:33372..34203+

>mRNA_P-littoralis_Contig1183.4.1 ID=mRNA_P-littoralis_Contig1183.4.1|Name=mRNA_P-littoralis_Contig1183.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=477bp|location=Sequence derived from alignment at P-littoralis_Contig1183:33372..34203+ (Pylaiella littoralis U1_48)
ATGTCACCTGAGGCCCCACCACCCGAGCCCGTCTCTCCACCCTCCTCAAT
ACTCATGTCATCCTGGTCCACGCACCCGTCGCTGCCAGTCTCTGACGCCC
CACCCCTCGTGGTCTCTAGAGTCTTCGGCATCCCAAAAGCTGTTCGGCTT
GTCCAGTCCCTCCACGTTGATCCTGTCATCGCCGGAGCCATCCACTGCCA
TCGCCATGCCACACTTTTCAAAAAGGCGGAAACGAAACTCCGGGCGTTTG
TCGATAGTTTCTCTGGCGGCTCCCACCCATTGCGTGATGAACACACGCCG
GTCAGATGCTGTCAACGAGTTGCTTTCCCACTTGTCCAAGTTGCCCGATT
CCTCGAGCCATTGTCCAGTTGTTTCCCAACTTCAGAGTTCAGGAAGCGTC
TTGCATCAACGGGCTGCACCTCTTCGGTGTCATTGGCTGGAAAAAATCAG
GCGAGTGTGTTGCAGTGCTCTGAAAGG