mRNA_P-littoralis_Contig726.26.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig726.26.1
Unique NamemRNA_P-littoralis_Contig726.26.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig726.26.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 1.120e-56
Identity = 88/107 (82.24%), Postives = 95/107 (88.79%), Query Frame = 1
Query:    1 HQVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTGPFPAQTTV 321
            H+VP LICP+K YAS  QQEWSKRFES+RKDIEC FGRLKGRFRLFKTGILF +REKIDNAWFTACIIHNML QFDGLANLEKD++W GKDGEAD+TTG FP  T V
Sbjct:  287 HRVPSLICPFKEYASEAQQEWSKRFESIRKDIECLFGRLKGRFRLFKTGILFGTREKIDNAWFTACIIHNMLHQFDGLANLEKDVDWAGKDGEADQTTGAFPVPTAV 393          
BLAST of mRNA_P-littoralis_Contig726.26.1 vs. uniprot
Match: A0A6H5KRU1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRU1_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 1.110e-53
Identity = 84/109 (77.06%), Postives = 91/109 (83.49%), Query Frame = 1
Query:    1 HQVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTGPFPAQTTVGS 327
            H+VPLLICP+K YA+V +Q+WSKR ESVRKDIEC FGRLKGRFRLFKTGILF  R KID+AWFTACIIHNMLL FDGL  LE DM+W GKDGEAD TTG FPA T   S
Sbjct:  153 HRVPLLICPFKVYANVAEQQWSKRLESVRKDIECLFGRLKGRFRLFKTGILFGDRTKIDDAWFTACIIHNMLLAFDGLDQLEVDMDWEGKDGEADSTTGVFPAVTVADS 261          
BLAST of mRNA_P-littoralis_Contig726.26.1 vs. uniprot
Match: A0A6H5L0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H2_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 2.910e-51
Identity = 84/109 (77.06%), Postives = 91/109 (83.49%), Query Frame = 1
Query:    1 HQVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTGPFPAQTTVGS 327
            H+VPLLICP+K YA+V +Q+WSKR ESVRKDIEC FGRLKGRFRLFKTGILF  R KID+AWFTACIIHNMLL FDGL  LE DM+W GKDGEAD TTG FPA T   S
Sbjct:  385 HRVPLLICPFKVYANVAEQQWSKRLESVRKDIECLFGRLKGRFRLFKTGILFGDRTKIDDAWFTACIIHNMLLAFDGLDQLEVDMDWEGKDGEADSTTGVFPAVTVADS 493          
BLAST of mRNA_P-littoralis_Contig726.26.1 vs. uniprot
Match: A0A6H5KFT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFT7_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 3.920e-38
Identity = 64/80 (80.00%), Postives = 69/80 (86.25%), Query Frame = 1
Query:    7 VPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLE 246
            VPLLICP+K YA+V +Q+WSKR ESVRKDIEC FGRLKGRFRLFKTGILF  R KID+A FTACIIHNMLL FDGL  LE
Sbjct:   56 VPLLICPFKVYANVAEQQWSKRLESVRKDIECLFGRLKGRFRLFKTGILFGDRTKIDDACFTACIIHNMLLAFDGLDQLE 135          
BLAST of mRNA_P-littoralis_Contig726.26.1 vs. uniprot
Match: A0A6H5JY35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY35_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 1.650e-32
Identity = 56/72 (77.78%), Postives = 63/72 (87.50%), Query Frame = 1
Query:    1 HQVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNML 216
            H+VPLLICP+K YA+V +Q+WSKR ESVRKD+EC FGRLKGRFRLFKTGILF  R KID+A FTACIIH ML
Sbjct:  164 HRVPLLICPFKVYANVAEQQWSKRLESVRKDMECLFGRLKGRFRLFKTGILFGDRTKIDDARFTACIIHTML 235          
BLAST of mRNA_P-littoralis_Contig726.26.1 vs. uniprot
Match: D7FV01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV01_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 1.540e-31
Identity = 56/92 (60.87%), Postives = 72/92 (78.26%), Query Frame = 1
Query:    4 QVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGE 279
            ++PLL+ P KT+ S+E+   S+R ESVRKDIEC FGR+KGR+RLF+  I F SREKIDNAW TACI+HNML +F+GL  +E+D +W G  GE
Sbjct:  150 KIPLLMPPIKTHNSIERHSCSRRMESVRKDIECCFGRVKGRWRLFRGNIPFGSREKIDNAWLTACILHNMLHKFNGLDEMEEDADWVGSAGE 241          
BLAST of mRNA_P-littoralis_Contig726.26.1 vs. uniprot
Match: A0A6H5KVL5_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVL5_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.990e-31
Identity = 55/96 (57.29%), Postives = 73/96 (76.04%), Query Frame = 1
Query:    7 VPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETT 294
            +PLLI P KT+ +VE+ +WS+R ES+RKDIEC FGR+KGR+RLF   +LF++R+K+DNAWFTACI+HNML  F+ L  +E+D  W G  G   E T
Sbjct:  159 IPLLIPPIKTHNTVEEHDWSRRLESMRKDIECCFGRVKGRWRLFGGDMLFSTRQKVDNAWFTACILHNMLHSFNRLDEMEEDGVWVGSAGRLGEAT 254          
BLAST of mRNA_P-littoralis_Contig726.26.1 vs. uniprot
Match: A0A6H5K604_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K604_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 4.960e-30
Identity = 51/88 (57.95%), Postives = 68/88 (77.27%), Query Frame = 1
Query:    4 QVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTG 267
            ++PLLI P K +A+VE+ +WS+R ES+RKDIEC +GR+KGRFRLFK GIL+ +R+ IDN WFTACI+HNML  +D L  + +   W G
Sbjct:  154 KIPLLIPPIKHHATVEEHDWSRRLESMRKDIECCYGRVKGRFRLFKAGILYKTRDSIDNPWFTACILHNMLHHYDKLDVMTEATGWQG 241          
BLAST of mRNA_P-littoralis_Contig726.26.1 vs. uniprot
Match: A0A6H5JU81_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU81_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.630e-29
Identity = 54/97 (55.67%), Postives = 71/97 (73.20%), Query Frame = 1
Query:    4 QVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETT 294
            ++PLLI P KT+ +VE+  WS+R ES+RKDIEC FGR+KG +RLF   ILF++R K+DNAWFTACI+HNML  F+ L  +E+D +W G      E T
Sbjct:  165 KIPLLIPPIKTHNTVEEHGWSRRLESMRKDIECCFGRVKGLWRLFGGDILFSTRPKVDNAWFTACILHNMLHSFNRLDEMEEDADWMGSAARLREAT 261          
BLAST of mRNA_P-littoralis_Contig726.26.1 vs. uniprot
Match: A0A6H5K7N8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7N8_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 3.820e-28
Identity = 54/95 (56.84%), Postives = 72/95 (75.79%), Query Frame = 1
Query:    4 QVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGILFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADE 288
            ++PLLI P KT+ +VE+ +WS+R ES+RKDIEC FGR+KGR+RLF   ILF++R+K DNA FTACI+HNML  F+ L  +E+D +W G  G   E
Sbjct:  217 KIPLLIPPIKTHNTVEEHDWSRRLESMRKDIECCFGRVKGRWRLFGGDILFSTRQKGDNACFTACILHNMLHSFNRLDEMEEDADWVGSAGRLGE 311          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig726.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV45_9PHAE1.120e-5682.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRU1_9PHAE1.110e-5377.06Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L0H2_9PHAE2.910e-5177.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFT7_9PHAE3.920e-3880.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY35_9PHAE1.650e-3277.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV01_ECTSI1.540e-3160.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVL5_9PHAE1.990e-3157.29DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K604_9PHAE4.960e-3057.95Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU81_9PHAE1.630e-2955.67DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K7N8_9PHAE3.820e-2856.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig726contigP-littoralis_Contig726:131258..131584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size327
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.5e-22
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size327
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791507.6007383-CDS-P-littoralis_Contig726:131257..1315841680791507.6007383-CDS-P-littoralis_Contig726:131257..131584Pylaiella littoralis U1_48CDSP-littoralis_Contig726 131258..131584 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig726.26.1prot_P-littoralis_Contig726.26.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig726 131258..131584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig726.26.1

>prot_P-littoralis_Contig726.26.1 ID=prot_P-littoralis_Contig726.26.1|Name=mRNA_P-littoralis_Contig726.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=109bp
HQVPLLICPYKTYASVEQQEWSKRFESVRKDIECFFGRLKGRFRLFKTGI
LFNSREKIDNAWFTACIIHNMLLQFDGLANLEKDMNWTGKDGEADETTGP
FPAQTTVGS
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mRNA from alignment at P-littoralis_Contig726:131258..131584+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig726.26.1 ID=mRNA_P-littoralis_Contig726.26.1|Name=mRNA_P-littoralis_Contig726.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=327bp|location=Sequence derived from alignment at P-littoralis_Contig726:131258..131584+ (Pylaiella littoralis U1_48)
CACCAGGTGCCCCTTCTCATATGCCCGTATAAAACGTACGCGAGCGTTGA ACAGCAGGAGTGGAGCAAGAGATTCGAGTCAGTACGCAAGGACATCGAGT GCTTTTTCGGAAGACTCAAGGGGCGGTTCAGGTTGTTCAAGACCGGCATT TTGTTCAACAGCCGGGAGAAGATCGACAACGCCTGGTTCACGGCTTGCAT CATTCACAACATGCTCCTGCAGTTTGACGGCCTGGCCAACCTTGAGAAGG ACATGAACTGGACGGGCAAGGATGGAGAGGCGGACGAGACCACCGGCCCT TTCCCCGCACAGACGACTGTTGGCAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig726:131258..131584+

>mRNA_P-littoralis_Contig726.26.1 ID=mRNA_P-littoralis_Contig726.26.1|Name=mRNA_P-littoralis_Contig726.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=327bp|location=Sequence derived from alignment at P-littoralis_Contig726:131258..131584+ (Pylaiella littoralis U1_48)
CACCAGGTGCCCCTTCTCATATGCCCGTATAAAACGTACGCGAGCGTTGA
ACAGCAGGAGTGGAGCAAGAGATTCGAGTCAGTACGCAAGGACATCGAGT
GCTTTTTCGGAAGACTCAAGGGGCGGTTCAGGTTGTTCAAGACCGGCATT
TTGTTCAACAGCCGGGAGAAGATCGACAACGCCTGGTTCACGGCTTGCAT
CATTCACAACATGCTCCTGCAGTTTGACGGCCTGGCCAACCTTGAGAAGG
ACATGAACTGGACGGGCAAGGATGGAGAGGCGGACGAGACCACCGGCCCT
TTCCCCGCACAGACGACTGTTGGCAGC
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