mRNA_P-littoralis_Contig726.4.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig726.4.2
Unique NamemRNA_P-littoralis_Contig726.4.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig726.4.2 vs. uniprot
Match: A0A6H5KRD8_9PHAE (BZIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRD8_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.750e-20
Identity = 62/91 (68.13%), Postives = 66/91 (72.53%), Query Frame = 1 
Query:  316 DGDFSSSGGVEDVFLAGFESWSELGGGQMQGALQGQQQQDTARTAGAGISPGNAVPGAGRAPPGIGSMTGLGGSMQSFLGEAGML--GGGS 582
            DG+FS  GGVEDVFLAGFE+W ELGGGQMQG+              AG SPG+   G  RAPPGIGSMTGLGGSMQSFLGEAGML  GGGS
Sbjct:    6 DGEFSG-GGVEDVFLAGFEAWGELGGGQMQGSQS------------AGYSPGSGAAGGARAPPGIGSMTGLGGSMQSFLGEAGMLPEGGGS 83
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig726.4.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KRD8_9PHAE1.750e-2068.13BZIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig726contigP-littoralis_Contig726:27771..29411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size757
Hectar predicted targeting categoryother localisation
Exons2
Cds size465
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791507.1924717-CDS-P-littoralis_Contig726:27770..281271680791507.1924717-CDS-P-littoralis_Contig726:27770..28127Pylaiella littoralis U1_48CDSP-littoralis_Contig726 27771..28127 -
1680791507.2042356-CDS-P-littoralis_Contig726:29012..291201680791507.2042356-CDS-P-littoralis_Contig726:29012..29120Pylaiella littoralis U1_48CDSP-littoralis_Contig726 29013..29120 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791507.2182-UTR-P-littoralis_Contig726:29120..294111680791507.2182-UTR-P-littoralis_Contig726:29120..29411Pylaiella littoralis U1_48UTRP-littoralis_Contig726 29121..29411 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig726.4.2prot_P-littoralis_Contig726.4.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig726 27771..29120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig726.4.2

>prot_P-littoralis_Contig726.4.2 ID=prot_P-littoralis_Contig726.4.2|Name=mRNA_P-littoralis_Contig726.4.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=155bp
MNNGGGGGDGDFSSSGGVEDVFLAGFESWSELGGGQMQGALQGQQQQDTA
RTAGAGISPGNAVPGAGRAPPGIGSMTGLGGSMQSFLGEAGMLGGGSGAE
SAGGESSSSSSKQRFSGGGGGGGTVSANANANSYAAAAAAAGRCKIEDME
EEEEE
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mRNA from alignment at P-littoralis_Contig726:27771..29411-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig726.4.2 ID=mRNA_P-littoralis_Contig726.4.2|Name=mRNA_P-littoralis_Contig726.4.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1641bp|location=Sequence derived from alignment at P-littoralis_Contig726:27771..29411- (Pylaiella littoralis U1_48)
CTGCCCTTCACTTTTTCCCAAAGGATTCTGATTTGCAGTCATTGTTTGTA
TTGTTCTGTGTTGCCACATCGACCTCTCGCCACCTCAGCCGCTTCTTATT
TGTGTTTTGAGGCTGGTGACGTCTACCCACCAAATTACAGCACGCAGCAA
GCACTTCCCACACACGTCCACAATACAACAGACATCACACCCAACACCAA
GAATTGACTGACTGCCCTGGACAACAAGTCGGCGTGCACTCACGGACATA
TCTGGGGACAGGAGGAGAATAGAGTCACGGAGCGAGACAGGATGAACAAC
GGCGGCGGAGGAGGTGATGGAGACTTCTCTTCCAGCGGCGGTGTAGAGGA
TGTATTCCTAGCTGGTTTTGAATCATGGAGTGAGCTAGGCGGTGGACAGG
TTCGTTAACTTTGGTGTTATTTTTTTACTCTGTGCACAAACAAATGCGTA
GCTGCCGTTCAATCCTGATAAAGCTTGAGAAGATCAAGAGCACGCTGTTC
TCGCCCTCGCGCTGCTGCGACGGGTTAGATGTCTTTGTCGCGTTTAGAGT
CAATCAACTCCATGCTGTCCTGTTCCCCAATCCATGTCTGGCGTCTCTTT
CTCTAGTTCAAGATTGATTCCTTGTTTTCATTTTGGCAAAATTATTTGGC
CCATGATCGAGAGAGCGCCATGCCCGTATGTGCAACGCCGTAGCACTCCC
GTAGGATCACCGGAGCTGGCCGATGGCGGTGAACCTTAGCTTCTTTGTGA
AGAGGCTAGCCCGTTGTTGGGCGATACTTTCCAGTGTTGTTGAATCCCAG
TTTTTCCTTTGCCGCAACAGCGACGTAGCTGCCTTCTGCCGTGTTGTGAT
TTTGTCCAGTGGCTGCTGTAATCCATAATCGACCTTGACAGTTTCATGTC
TCCATCAAAAATATGTCAAAAAAGACACAACGAGTTTTCATGTCCTGTTC
CTGTTGCACGCGGAAAGCCACTATGACCGAATCCATAGCATGCACGACTC
ATGCTTGGGCTGTTGTTGTCCTGCGAAGCAACATAGTATCCGCCAATGCC
AATCCGCCAATGCCAATCCAGCAGCATATCTATACGACCGTCCCTACCGT
TCAAAATGCACCGGGTACAAACTCATGTGATGAATGCATGTTTACTGAGA
GTCAAGTCTCACCGTCGAAGACAAACATTTTTTTCTTTCTTTGATTCTAG
TTGTTAATTCTCACATTAGCTCACTACCGCCGGAGTCTATTTTTCATGAA
CATCGTCCTATGCTGGTTTGACGCCACTCAGCAGATGCAAGGCGCGCTGC
AGGGACAGCAGCAGCAGGATACGGCACGCACTGCTGGTGCTGGCATTAGT
CCTGGCAATGCTGTACCTGGCGCTGGCAGAGCACCCCCCGGCATCGGATC
AATGACGGGCCTAGGCGGCAGCATGCAGTCGTTTCTGGGAGAGGCGGGGA
TGCTCGGCGGCGGCAGCGGTGCCGAGAGCGCGGGCGGTGAAAGCAGTAGC
AGCAGCAGCAAGCAGCGGTTTAGCGGTGGCGGTGGTGGCGGTGGCACTGT
CTCTGCCAATGCTAATGCCAACAGCTACGCTGCCGCTGCAGCTGCTGCCG
GGCGATGCAAGATAGAGGACATGGAGGAAGAAGAGGAGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig726:27771..29411-

>mRNA_P-littoralis_Contig726.4.2 ID=mRNA_P-littoralis_Contig726.4.2|Name=mRNA_P-littoralis_Contig726.4.2|organism=Pylaiella littoralis U1_48|type=CDS|length=465bp|location=Sequence derived from alignment at P-littoralis_Contig726:27771..29411- (Pylaiella littoralis U1_48)
ATGAACAACGGCGGCGGAGGAGGTGATGGAGACTTCTCTTCCAGCGGCGG
TGTAGAGGATGTATTCCTAGCTGGTTTTGAATCATGGAGTGAGCTAGGCG
GTGGACAGATGCAAGGCGCGCTGCAGGGACAGCAGCAGCAGGATACGGCA
CGCACTGCTGGTGCTGGCATTAGTCCTGGCAATGCTGTACCTGGCGCTGG
CAGAGCACCCCCCGGCATCGGATCAATGACGGGCCTAGGCGGCAGCATGC
AGTCGTTTCTGGGAGAGGCGGGGATGCTCGGCGGCGGCAGCGGTGCCGAG
AGCGCGGGCGGTGAAAGCAGTAGCAGCAGCAGCAAGCAGCGGTTTAGCGG
TGGCGGTGGTGGCGGTGGCACTGTCTCTGCCAATGCTAATGCCAACAGCT
ACGCTGCCGCTGCAGCTGCTGCCGGGCGATGCAAGATAGAGGACATGGAG
GAAGAAGAGGAGGAG
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