mRNA_P-littoralis_Contig726.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig726.15.1
Unique NamemRNA_P-littoralis_Contig726.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig726.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig726contigP-littoralis_Contig726:100804..101825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size260
Hectar predicted targeting categoryother localisation
Exons3
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791506.8666668-CDS-P-littoralis_Contig726:100803..1008551680791506.8666668-CDS-P-littoralis_Contig726:100803..100855Pylaiella littoralis U1_48CDSP-littoralis_Contig726 100804..100855 +
1680791506.8785806-CDS-P-littoralis_Contig726:101040..1011301680791506.8785806-CDS-P-littoralis_Contig726:101040..101130Pylaiella littoralis U1_48CDSP-littoralis_Contig726 101041..101130 +
1680791506.8885534-CDS-P-littoralis_Contig726:101708..1018241680791506.8885534-CDS-P-littoralis_Contig726:101708..101824Pylaiella littoralis U1_48CDSP-littoralis_Contig726 101709..101824 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig726.15.1prot_P-littoralis_Contig726.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig726 100804..101824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig726.15.1

>prot_P-littoralis_Contig726.15.1 ID=prot_P-littoralis_Contig726.15.1|Name=mRNA_P-littoralis_Contig726.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
SSPGRNLPQEGEQAELRGQRRAMEERGGSALGESSSSRMANGTTGLSSGN
TGLISPAGAGATTAVHPGAGGGSTGATPYTEAGGDT
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mRNA from alignment at P-littoralis_Contig726:100804..101825+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig726.15.1 ID=mRNA_P-littoralis_Contig726.15.1|Name=mRNA_P-littoralis_Contig726.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1022bp|location=Sequence derived from alignment at P-littoralis_Contig726:100804..101825+ (Pylaiella littoralis U1_48)
TCGTCACCAGGAAGGAATTTGCCTCAAGAAGGCGAACAGGCCGAGCTGAG
AGGTGAGTTGGGTCTTCAGCAGTGCTATGTTGTTTCGGTGGTTCTCGCCC
CTGTAGCCTCTCGTCGATACAGCAGTCGGAATATGAAATCTTGCGAGTTT
AAAATCCTTGCTTTGGAAGATCTGTACAAATTTGAAATGTAACGGTAAAA
GACACACAATCCTCTTCGTGATTACGGCCAACAACAGGCCAGCGCAGGGC
TATGGAGGAGAGGGGTGGATCTGCTCTTGGCGAGTCATCGTCATCCAGGA
TGGCCAATGGAACGACAGGGCTTAGCAGTGAGTGTTTTGCGGTCATGTTC
GAGATTACTGCTGTTGTCATGTTGCACTTATATACCCACCGCTCTCTTTT
CGTGTACAGCAGTATCACACATCGTGGAGGACATGAGCCCCACCACCTCA
AAGCAAACCACAGCAACAACCATCCATATCGTCGGTTACACAGGGCGAAG
TCCGAGGCCGGTCGACAAGAAGAATGTCTATCATATGCTCCCTGTAATTA
CCCGAAGTTGTAGTTTTATCGTGAACTTCGGGACCCAACAGGTGCAGGAC
GTGACTGCGGCATAGGTCGTATACGATGCGAAAGTGCTCCGAACGACGTG
TTGATAAGTCGAAGCGTAACTCGAGGTGGCTGGAGGTGGAGGGTTAGCAT
ATTTTGGGGTACAGATATGACAACAGTTACATCGGTAGTACACGCAGGGA
TGTCCCGAATTGCTCGGTACGTGTGGAGCACTGCCTCGTCCTCCACTAAC
TGCCAAATTCCTCCCTACACAGACTCGTTAAGTTGGGTGACTTAGTTTCC
TTCTCATGATGAATTGTCTCCGATTTTCCACTCCCGAATGCTGGCGTCGT
CGAAGGTGGAAATACGGGTCTCATTTCCCCTGCTGGGGCTGGGGCCACTA
CTGCTGTACACCCTGGTGCTGGTGGCGGCAGCACCGGGGCTACACCGTAT
ACCGAAGCCGGTGGCGACACCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig726:100804..101825+

>mRNA_P-littoralis_Contig726.15.1 ID=mRNA_P-littoralis_Contig726.15.1|Name=mRNA_P-littoralis_Contig726.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig726:100804..101825+ (Pylaiella littoralis U1_48)
TCGTCACCAGGAAGGAATTTGCCTCAAGAAGGCGAACAGGCCGAGCTGAG
AGGCCAGCGCAGGGCTATGGAGGAGAGGGGTGGATCTGCTCTTGGCGAGT
CATCGTCATCCAGGATGGCCAATGGAACGACAGGGCTTAGCAGTGGAAAT
ACGGGTCTCATTTCCCCTGCTGGGGCTGGGGCCACTACTGCTGTACACCC
TGGTGCTGGTGGCGGCAGCACCGGGGCTACACCGTATACCGAAGCCGGTG
GCGACACC
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