mRNA_P-littoralis_Contig1182.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1182.19.1
Unique NamemRNA_P-littoralis_Contig1182.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1182.19.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 1.650e-40
Identity = 87/159 (54.72%), Postives = 109/159 (68.55%), Query Frame = 1 
Query:  238 PELQPPAETVATISPGGGKQSIQVTLEPPQEGKRKLTAWVWRFVSRFSPTINDKNVVCLVKGPEGKICGHLLKWSSSTTQAQRGSGTTGLAKHLEKFHPAVVKGAKEETGTKEERKAPIRAAVAGRESPEASGGTPQ------SSLLEYMSRKMDKKQR 696
            PELQ  +E+   ++ G G QSI VTL  PQ GKR+LTAW W+ +SRF+P+INDKNVVCLVK  +G  C HL+KW+ S  + QRGSGTTGL KH+EKFHP   +  KEE GT+ ERK  I+AA+AG  S  +S   P       SSL+ YM  K+DKK+R
Sbjct:   47 PELQSSSESRTMVNAGRG-QSISVTLMEPQYGKRRLTAWCWQVMSRFTPSINDKNVVCLVKKKDGTTCNHLMKWTPSEGK-QRGSGTTGLTKHIEKFHPTTAQKIKEEEGTQAERKESIQAAIAGDSSAGSSTALPSASASSSSSLVNYMVPKLDKKRR 203
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BLAST of mRNA_P-littoralis_Contig1182.19.1 vs. uniprot
Match: A0A6H5JE87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE87_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 3.780e-31
Identity = 62/123 (50.41%), Postives = 84/123 (68.29%), Query Frame = 1 
Query:  238 PELQPPAETVATISPGGGKQSIQVTLEPPQEGKRKLTAWVWRFVSRFSPTINDKNVVCLVKGPEGKICGHLLKWSSSTTQAQRGSGTTGLAKHLEKFHPAVVKGAKEETGTKEERKAPIRAAV 606
            P LQ P E+ A+I  G GK +++VTL+ P EGKR+LT+W W F SRFSP+IN KNVVCLVK  +G  CG L+KW  +    ++G+GT+G++KHLE  H + V   K + G  E+  API AA+
Sbjct:   40 PVLQVPPESEASIDVGKGK-TVKVTLKEPMEGKRRLTSWTWNFASRFSPSINGKNVVCLVKKADGTPCGRLMKWEGAAL-GKKGTGTSGISKHLEICHKSEVDKHKAKVGASEDNTAPIVAAL 160
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BLAST of mRNA_P-littoralis_Contig1182.19.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.510e-28
Identity = 63/123 (51.22%), Postives = 84/123 (68.29%), Query Frame = 1 
Query:  238 PELQPPAETVATISPGGGKQSIQVTLEPPQEGKRKLTAWVWRFVSRFSPTINDKNVVCLVKGPEGKICGHLLKWSSSTTQAQRGSGTTGLAKHLEKFHPAVVKGAKEETGTKEERKAPIRAAV 606
            P LQ P E+ A+I  G GK +++VTLE P EGKR+LT+W W F SRFSP+IN KNVVCLVK  +G  CG L+KW  +    ++G+GT+G++KHLE  H + V   K + G  E+  API AA+
Sbjct:   40 PVLQVPPESEASIDVGKGK-TVKVTLEEPMEGKRRLTSWTWNFASRFSPSINGKNVVCLVKKADGTPCGRLMKWEGAAL-GKKGTGTSGISKHLEICHKSEVDKHKAKVGASEDNTAPIVAAL 160
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BLAST of mRNA_P-littoralis_Contig1182.19.1 vs. uniprot
Match: A0A6H5KVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP4_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.690e-28
Identity = 63/123 (51.22%), Postives = 84/123 (68.29%), Query Frame = 1 
Query:  238 PELQPPAETVATISPGGGKQSIQVTLEPPQEGKRKLTAWVWRFVSRFSPTINDKNVVCLVKGPEGKICGHLLKWSSSTTQAQRGSGTTGLAKHLEKFHPAVVKGAKEETGTKEERKAPIRAAV 606
            P LQ P E+ A+I  G GK +++VTLE P EGKR+LT+W W F SRFSP+IN KNVVCLVK  +G  CG L+KW  +    ++G+GT+G++KHLE  H + V   K + G  E+  API AA+
Sbjct: 1124 PVLQVPPESEASIDVGKGK-TVKVTLEEPMEGKRRLTSWTWNFASRFSPSINGKNVVCLVKKADGTPCGRLMKWEGAAL-GKKGTGTSGISKHLEICHKSEVDKHKAKVGASEDNTAPIVAAL 1244
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BLAST of mRNA_P-littoralis_Contig1182.19.1 vs. uniprot
Match: A0A6H5JJD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJD8_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.350e-26
Identity = 61/118 (51.69%), Postives = 76/118 (64.41%), Query Frame = 1 
Query:  211 QPVADSDSHPELQPPAETVATISPGGGKQSIQVTLEPPQEGKRKLTA-WVWRFVSRFSPTINDKNVVCLVKGPEGKICGHLL-KWSSSTTQAQ-----RGSGTTGLAKHLEKFHPAVV 543
            +PVA+S   P LQ P ET A++  G GK ++QVTLE P EGKR LT+ W W F SRFSP IN KNVVC+ K  +G  C HL+ KW  + T A      +GSGT+G++KHLE  H   V
Sbjct:   35 EPVAES--VPVLQSPPETQASVDAGNGK-TVQVTLEEPVEGKRMLTSSWTWHFASRFSPPINGKNVVCMAKKADGTTCKHLIMKWEGAATAAVTGKRGKGSGTSGISKHLETAHKVEV 149
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BLAST of mRNA_P-littoralis_Contig1182.19.1 vs. uniprot
Match: A0A6H5KFJ9_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ9_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 6.750e-18
Identity = 44/78 (56.41%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:  373 RFSPTINDKNVVCLVKGPEGKICGHLLKWSSSTTQAQRGSGTTGLAKHLEKFHPAVVKGAKEETGTKEERKAPIRAAV 606
            RF+P+INDKNVVCLVK  +G  C HL+KW+ S +  QRG+GT+ L+KH+ K HPA  K  ++E GT  +RK PIRAA+
Sbjct:  211 RFTPSINDKNVVCLVKKKDGTTCNHLMKWTPSESNKQRGTGTSWLSKHIAKAHPATAKTRRDE-GTPADRKEPIRAAI 287
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1182.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JRT6_9PHAE1.650e-4054.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JE87_9PHAE3.780e-3150.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGG8_9PHAE1.510e-2851.22Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KVP4_9PHAE1.690e-2851.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJD8_9PHAE1.350e-2651.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFJ9_9PHAE6.750e-1856.41Fanconi-associated nuclease n=1 Tax=Ectocarpus sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1182contigP-littoralis_Contig1182:57859..59100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size720
Hectar predicted targeting categoryother localisation
Exons2
Cds size720
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789496.7771776-CDS-P-littoralis_Contig1182:57858..584651680789496.7771776-CDS-P-littoralis_Contig1182:57858..58465Pylaiella littoralis U1_48CDSP-littoralis_Contig1182 57859..58465 +
1680789496.7907467-CDS-P-littoralis_Contig1182:58987..591001680789496.7907467-CDS-P-littoralis_Contig1182:58987..59100Pylaiella littoralis U1_48CDSP-littoralis_Contig1182 58988..59100 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1182.19.1prot_P-littoralis_Contig1182.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1182 57859..59100 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1182.19.1

>prot_P-littoralis_Contig1182.19.1 ID=prot_P-littoralis_Contig1182.19.1|Name=mRNA_P-littoralis_Contig1182.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=240bp
MCRQARRAACATRHTCPARRVRVVCLAMSASDPSVSATPSGEEAASADSS
TPAPGDASQDANESAVNTSDQPVADSDSHPELQPPAETVATISPGGGKQS
IQVTLEPPQEGKRKLTAWVWRFVSRFSPTINDKNVVCLVKGPEGKICGHL
LKWSSSTTQAQRGSGTTGLAKHLEKFHPAVVKGAKEETGTKEERKAPIRA
AVAGRESPEASGGTPQSSLLEYMSRKMDKKQRRWPTSAT*
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mRNA from alignment at P-littoralis_Contig1182:57859..59100+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1182.19.1 ID=mRNA_P-littoralis_Contig1182.19.1|Name=mRNA_P-littoralis_Contig1182.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1242bp|location=Sequence derived from alignment at P-littoralis_Contig1182:57859..59100+ (Pylaiella littoralis U1_48)
ATGTGCAGACAGGCGCGGCGTGCGGCGTGCGCCACACGCCACACCTGCCC
AGCACGCAGAGTGCGCGTGGTCTGTCTAGCAATGAGCGCTTCAGACCCTA
GTGTTAGTGCTACTCCCAGTGGTGAAGAGGCTGCGTCAGCCGATTCATCC
ACGCCAGCTCCGGGCGACGCATCGCAGGATGCGAATGAGTCGGCGGTGAA
CACGAGCGATCAACCGGTGGCTGACAGTGATAGCCACCCGGAGTTGCAAC
CACCAGCCGAGACTGTAGCCACGATCAGTCCCGGCGGAGGCAAGCAGAGC
ATCCAGGTCACACTCGAGCCTCCTCAAGAAGGGAAAAGGAAGTTGACGGC
CTGGGTTTGGAGGTTTGTGAGTAGGTTTTCCCCGACCATCAACGATAAGA
ACGTGGTTTGCTTGGTGAAGGGGCCTGAGGGGAAGATCTGCGGCCATCTG
CTGAAGTGGTCTTCATCAACCACGCAGGCCCAAAGAGGGTCGGGAACGAC
TGGCTTAGCCAAGCACCTCGAAAAATTTCACCCGGCCGTGGTCAAGGGTG
CGAAGGAGGAGACAGGCACCAAGGAGGAGAGGAAAGCACCAATTCGAGCG
GCAGTTGGTGAGTCATATTACATTATTTAAGTATAATATTTATTATTTAT
TATTTATCACTTCGTATTTATTATTTATTATGTATTGTATAGACTATTTA
CTACTCCGTATTCACTGTTTGTTTGTTTTGTTTTCTATTTTCTATTTTTG
CAACTGATTTTGGGCCGAAAAGACGGAAAATGCTGTTGACTTGATTTTGT
GATTTTGTATTGCCTTCCACAAAGCAACTGAAAATAATTATTAAAATTTA
CACATATTATTGTTGTTTCTATTGTCTCCCCCAAGAGAACACACATGTAC
GTATGTATGTACGAAGTGTGGTTTCTTGTTTATGTCTATTGTCTCATTGT
CTCCTACAAACGAAAAAATAATTTCATAAATTAAGTATTTTTTATTTTTC
TCCCCAAACGAAAAAAATAAAATAAAAAATAGTTGAATTAAATAAAAACT
ATATGAAACTTAAGATTAAAGCTATTTTTGTCTTTTTTGTTGTTTGTTTT
TCTATTCTCTCTTGGTACCTTTACGGCAGCGGGGCGTGAATCGCCGGAGG
CGTCAGGAGGAACACCTCAGTCGTCACTGCTAGAGTACATGTCACGGAAG
ATGGACAAGAAGCAAAGGAGGTGGCCGACCTCCGCTACGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1182:57859..59100+

>mRNA_P-littoralis_Contig1182.19.1 ID=mRNA_P-littoralis_Contig1182.19.1|Name=mRNA_P-littoralis_Contig1182.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=720bp|location=Sequence derived from alignment at P-littoralis_Contig1182:57859..59100+ (Pylaiella littoralis U1_48)
ATGTGCAGACAGGCGCGGCGTGCGGCGTGCGCCACACGCCACACCTGCCC
AGCACGCAGAGTGCGCGTGGTCTGTCTAGCAATGAGCGCTTCAGACCCTA
GTGTTAGTGCTACTCCCAGTGGTGAAGAGGCTGCGTCAGCCGATTCATCC
ACGCCAGCTCCGGGCGACGCATCGCAGGATGCGAATGAGTCGGCGGTGAA
CACGAGCGATCAACCGGTGGCTGACAGTGATAGCCACCCGGAGTTGCAAC
CACCAGCCGAGACTGTAGCCACGATCAGTCCCGGCGGAGGCAAGCAGAGC
ATCCAGGTCACACTCGAGCCTCCTCAAGAAGGGAAAAGGAAGTTGACGGC
CTGGGTTTGGAGGTTTGTGAGTAGGTTTTCCCCGACCATCAACGATAAGA
ACGTGGTTTGCTTGGTGAAGGGGCCTGAGGGGAAGATCTGCGGCCATCTG
CTGAAGTGGTCTTCATCAACCACGCAGGCCCAAAGAGGGTCGGGAACGAC
TGGCTTAGCCAAGCACCTCGAAAAATTTCACCCGGCCGTGGTCAAGGGTG
CGAAGGAGGAGACAGGCACCAAGGAGGAGAGGAAAGCACCAATTCGAGCG
GCAGTTGCGGGGCGTGAATCGCCGGAGGCGTCAGGAGGAACACCTCAGTC
GTCACTGCTAGAGTACATGTCACGGAAGATGGACAAGAAGCAAAGGAGGT
GGCCGACCTCCGCTACGTGA
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