mRNA_P-littoralis_Contig725.22.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig725.22.1 vs. uniprot
Match: A0A6H5LGI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGI1_9PHAE) HSP 1 Score: 373 bits (957), Expect = 7.970e-115 Identity = 257/548 (46.90%), Postives = 327/548 (59.67%), Query Frame = 1
Query: 595 DELPHLGTVHESVPEYEDAKCVDGEVPKFRFSALRSHYFPFRGLTEMQIAIWAIIHRPSRKSLQMLLDILAFVDASGCRFDPRDLPRSAEHFISSMRQNLPLLKVFERIIKDKNRAPSRAMDIPLNLQLERLFSCPRVVEEWTKNFGGHVMSASERVSNHVPDEHITPVATQLADEARETYMNGDLLQSSSHMGLECITAVDGARVMVGDTVMARVPGGGNTPKPCRLAGMFWRDDRKQNRRSLELAEGRQDILGSLGFENIHSEGGASEGRGRSDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKVGSNGGSSVQGGPVRSSVRRRGPTPKGKAYAENVAAAKSRQPGKGRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGEDAV--LVGCLVVRVNPLLSSHDVDSALRNKRKLDDSR*HVW*LTNAPQEIRTSDIAGLCVVIQPGSCGPDTE---LPTFVVEGFVEKAARSKVFREVIKPWRPEGVHGWFLNRRASCVNANLGRFPVFSAGLACSSDAFNYFTLSGKKKSL 2223
+++ L +H+++PEY+DA+CVDG P+F ALRS +FP+R L E I +WA+ HRPSRKSLQ+LL + +FVD G RF P D PRS EH IS MR+ LP L VFER I DKN ++A+DIP N+ L+R+ SCPRVVEEW KNFGGHVMS SER N++PDEHITPVAT+LAD+A ETYMNG L++S SHMGL+C+TA DG +VMVGDT+MARVP G TP+PCRLA + R + L E + G XX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX V S P+G+ + N A R+ E+++ G LVVR+N LLS +V + KR+ ++ +W LTN P EIR ++G C V+ PG ++ +P + EGFVE+ R+ R + PW +G HG F ++RAS V+ NL PV SAG+ACSSD FNYF+LSG+K S+
Sbjct: 21 EDMDDLKDMHKTLPEYKDAECVDGVDPQFLIDALRSRHFPWRNLMEQLIGVWAVTHRPSRKSLQILLGLFSFVDRQGYRFRPEDAPRSVEHLISRMRKRLPHLPVFERTINDKNGETAKAIDIPFNVLLQRMLSCPRVVEEWRKNFGGHVMSRSERAKNNLPDEHITPVATELADKACETYMNGKLVRSFSHMGLQCVTAGDGVQVMVGDTIMARVPDCG-TPQPCRLAAISGGTFRNETEEICSLQEEGRTWRNGWGCRMKKIAVARPAAAAXXXXXXVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTVASMAE-----PQGEPFRPNAGQAAVRK----------------------TTGEAADPDGRSTSSEESMGSNEGHLVVRINRLLSRREVGHSFATKRRREEKYEQLWELTNDPLEIRVGAMSGRCSVLVPGDTSEPSDGDAVPAYDGEGFVEQIPRTNELRLAMAPWTKQGYHGRFFDQRASGVHKNLAGLPVISAGIACSSDDFNYFSLSGRKYSV 540
BLAST of mRNA_P-littoralis_Contig725.22.1 vs. uniprot
Match: A0A6H5JE27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE27_9PHAE) HSP 1 Score: 208 bits (530), Expect = 1.010e-54 Identity = 111/246 (45.12%), Postives = 150/246 (60.98%), Query Frame = 1
Query: 604 PHLGTVHESVPEYEDAKCVDGEVPKFRFSALRSHYFPFRGLTEMQIAIWAIIHRPSRKSLQMLLDILAFVDASGCRFDPRDLPRSAEHFISSMRQNLPLLKVFERIIKDKNRAPSRAMDIPLNLQLERLFSCPRVVEEWTKNFGGHVMSASERVSNHVPDEHITPVATQLADEARETYMNGDLLQSSSHMGLECITAVDGARVMVGDTVMARVPGGGNTPKPCRLAGMFWRDDRKQNRRSLELAEG 1341
P L +H+ + EY +A+ VDGE F AL S +FP+ LTEM +++WAI+ RPSRKSLQMLLD+L D+ G RFDPRD+P S+EH +S MR+ LPLL V R +K K+ A+E VPD H TP+AT+ +D AR +M+GD++ +S+HMGLEC+ DG R+MVGDT M R+P GN+P PCR+A +FW++ RKQ RR+LEL+ G
Sbjct: 126 PWLEHLHKLIEEYMNAEVVDGEDLNFAGLALGSRFFPWANLTEMLVSVWAIVCRPSRKSLQMLLDLLRVEDSEGGRFDPRDVPESSEHLVSRMRRRLPLLPVVRREVKGKDD------------------------------------KAAE-----VPDFHFTPIATRESDGARGGFMSGDIMMASAHMGLECVATTDGVRLMVGDTAMVRLPAFGNSPHPCRIAAIFWQNTRKQRRRALELSGG 330
BLAST of mRNA_P-littoralis_Contig725.22.1 vs. uniprot
Match: D7FZI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI4_ECTSI) HSP 1 Score: 116 bits (290), Expect = 1.730e-23 Identity = 54/69 (78.26%), Postives = 64/69 (92.75%), Query Frame = 3
Query: 2214 EKFSVNATYIALGCLSPALLRRLRSWQLATLGLPGAARELDVAPLMKIIRLLENGCRAEISTGEKQTVT 2420
+++SVNAT++ LGCLSPALLRRLRSW LATLGLPGAA ELDV PLMKIIRLL+NGC+AEI+ G+KQT+T
Sbjct: 50 KRYSVNATFVGLGCLSPALLRRLRSWHLATLGLPGAAWELDVLPLMKIIRLLQNGCKAEIAVGDKQTIT 118
BLAST of mRNA_P-littoralis_Contig725.22.1 vs. uniprot
Match: A0A6H5JXS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXS6_9PHAE) HSP 1 Score: 107 bits (266), Expect = 1.950e-23 Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = 3
Query: 2217 KFSVNATYIALGCLSPALLRRLRSWQLATLGLPGAARELDVAPLMKIIRLLENGCRAEISTGEKQTVT 2420
K SV+AT++ LGCLSP LLRRLRSW LATLGLPGAA ELD+ PLM+IIR L+NGC+ EIS G+KQTVT
Sbjct: 73 KHSVSATFVGLGCLSPTLLRRLRSWYLATLGLPGAAWELDILPLMEIIRWLQNGCKTEISIGDKQTVT 140
BLAST of mRNA_P-littoralis_Contig725.22.1 vs. uniprot
Match: A0A6H5KT11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT11_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 2.860e-18 Identity = 72/244 (29.51%), Postives = 117/244 (47.95%), Query Frame = 1
Query: 682 RFSALRSHYFPFRGLTEMQIAIWAIIHRPSRKSLQMLLDILAFVDA-------SGCRFDPRDLPRSAEHFISSMRQNLPLLKVFERI--IKDKNRAPS-----RAMDIPLNLQLERLFSCPRVVEEWTKNFGGHVMSASERVSNHVPDEHITPVATQLADEARETYMNGDLLQSSSHMGLECITAVDGARVMVGDTVMA--RVPGGGNTPK--PCRLAGMFWRDDRKQNRRSLELAEGRQDILG 1359
+F + PF LT + + ++A+ H+ SR + L IL FVD G +F+ D+P S EHF+S MRQ LPL +V+ R K + P+ + DIP+ + L P +EE N GG V+ E + +HI PV T AR +M+G ++Q H+ + ++ G R+ VG+ VM R P +TP PCR+ ++ ++ ++ + ++LG
Sbjct: 86 QFGDKNQDHRPFWNLTTLLLGVFALKHQISRAGMTDLFTILRFVDGVQGDGGGDGRKFETADVPNSGEHFVSRMRQYLPLFEVWVRDAWFKPSKKDPAARTKGKVDDIPIAHVMAFLLKSPAFMEEMLGNPGGAVVDEEESRGIGLSSQHIFPVPTCPIGNARRNWMHGTIVQGQPHLNADGFLSLGGNRIYVGELVMCDLREPRA-DTPLQVPCRVVRCYFDEETRRLVVGVRCFRNANEVLG 328
BLAST of mRNA_P-littoralis_Contig725.22.1 vs. uniprot
Match: A0A6H5JMB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB1_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 1.420e-15 Identity = 67/233 (28.76%), Postives = 108/233 (46.35%), Query Frame = 1
Query: 712 PFRGLTEMQIAIWAIIHRPSRKSLQMLLDILAFVDAS-------GCRFDPRDLPRSAEHFISSMRQNLPLLKVFERII-------KDKNRAPSRAMDIPLNLQLERLFSCPRVVEEWTKNFGGHVMSASERVSNHVPDEHITPVATQLADEARETYMNGDLLQSSSHMGLECITAVDGARVMVGDTVMARVPGGGNTPK---PCRLAGMFWRDDRKQNRRSLELAEGRQDILG 1359
PF+ LTE+ + ++ + H+ SR + L DIL FVD G FD D+P + F+S M + LPL +V+ R + K R ++ DIP+ L+ + +EE N GG V+ E + EH+ P+ T+ A AR M+G L+Q + A +V VGD VM + G+ PCR+ F+ + ++ ++ L ++LG
Sbjct: 342 PFKSLTEILLFVFGVKHQLSRTGMTDLFDILTFVDGQPGDGAGEGRGFDTADVPEIGQKFVSRMPEFLPLFEVWVRDVVAKPDKKKSGARTTAKVYDIPITQVLDFMLKSRSHMEEIFANPGGAVVGKEEGQKLGLAGEHLFPLPTRPARNARRNNMHGTLVQRIPQHNFDDFLAQARTKVYVGDVVMCDLRDEGSPDSLQTPCRITATFFVEKSRRLVVTVRLFRDAHEVLG 574
BLAST of mRNA_P-littoralis_Contig725.22.1 vs. uniprot
Match: A0A6H5KIG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIG8_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 5.740e-15 Identity = 66/233 (28.33%), Postives = 107/233 (45.92%), Query Frame = 1
Query: 712 PFRGLTEMQIAIWAIIHRPSRKSLQMLLDILAFVDAS-------GCRFDPRDLPRSAEHFISSMRQNLPLLKVFERII-------KDKNRAPSRAMDIPLNLQLERLFSCPRVVEEWTKNFGGHVMSASERVSNHVPDEHITPVATQLADEARETYMNGDLLQSSSHMGLECITAVDGARVMVGDTVMARVPGGGNTPK---PCRLAGMFWRDDRKQNRRSLELAEGRQDILG 1359
PF+ LTE+ + ++ + H+ S + L DIL FVD G FD D+P + + F+S MR+ LPL +V+ R + K R ++ DIP+ L+ + +EE N GG V+ E + EH+ P+ T A AR M+G L+Q + A +V GD VM + G+ PCR+ F+ + ++ ++ L ++LG
Sbjct: 254 PFKSLTEILLFVFGVKHQLSGTGMTDLFDILTFVDGQPGDGAGEGRGFDTADVPENGQKFVSRMREFLPLFEVWVRDVVAKPAKKKSGARTTAKVYDIPITQVLDLMLKSRSHMEEIFANPGGAVVGKEEGQKLGLAGEHLFPLPTCPARNARRNNMHGTLVQRMPQHNFDGFLAQARTKVYEGDVVMCDLRDEGSPDPLQTPCRITATFFVEKSRRLVVTVRLFRDAHEVLG 486
BLAST of mRNA_P-littoralis_Contig725.22.1 vs. uniprot
Match: A0A6H5K953_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K953_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 3.240e-10 Identity = 64/212 (30.19%), Postives = 94/212 (44.34%), Query Frame = 1
Query: 790 LLDILAFVDAS-------GCRFDPRDLPRSAEHFISSMRQNLPLLKVFERIIKDKN--------RAPSRAMDIPLNLQLERLFSCPRVVEEWTKNFGGHVMSASERVSNHVPDEHITPVATQLADEARETYMNGDLLQSSSHMGLECITAVDGARVMVGDTVMA--RVPGGGNTPK-PCRLAGMFWRDDRKQNRRSLELAEGRQDILGSLGF 1371
L +IL FVD G FD D+P S EHFIS MR+ LPL +V+ R ++ K R ++ DIP+ L L + +EE +N GG V H+ PV T+ AR M+G ++Q+ S + R+ VG+ M R PG + PCR+ F+ + Q RR + + +D LG+
Sbjct: 4 LFEILRFVDGKQGDGAGEGRAFDTADVPSSGEHFISRMREYLPLFEVWVRDVRCKPPNRKNPGARTTAKVYDIPITQVLAFLLTSKESMEEVVQNPGGAV--------------HLFPVPTRPVGNARRNNMHGTIVQAMSQFNTDGFLTSGQTRLYVGEVAMCDLRQPGAAQPRQVPCRVVRSFFDE---QTRRLVVVVRCFRDAHEVLGY 198
BLAST of mRNA_P-littoralis_Contig725.22.1 vs. uniprot
Match: A0A6H5K7L1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7L1_9PHAE) HSP 1 Score: 69.7 bits (169), Expect = 1.510e-8 Identity = 68/276 (24.64%), Postives = 119/276 (43.12%), Query Frame = 1
Query: 571 GSPTPAD*DELPHLGTVHESVPEYEDAKCVDGEVPKFRFSALRSH---YFPFRGLTEMQIAIWAIIHRPSRKSLQMLLDILAFVDASGCRFDPRDLPRSAEHFISSMRQNLPLLKVFERII-------KDKNRAPSRAMDIPLNLQLERLFSCPRVVEEWTKNFGGHVMSASERVSNHVPDEHITPVATQLADEARETYMNGDLLQSSSHMGLECITAVDGARVMVGDTVMARVPGGGNTPK---PCRLAGMFWRDDRKQNRRSLELAEGRQDILG 1359
G P P D + + + +V + +A ++G K + L + + PF+ LTE+ + + + H+ S + L DIL +S F+ MR+ LP +V+ R + K R ++ DIP+ L+ + + E N GG V+ E + EH+ P+ T+ A AR M+G L+Q + A D +V VGD V+ + GG+ PCR+ F+ + ++ +++L D+LG
Sbjct: 137 GQPPPRD--DPRWMSNIAGTVGKRLNATVMEGGPTKTKLRQLSTRTQEWRPFKSLTEILLFVLGVKHQLSGTGMTDLFDILTTAKSS---------------FL--MREFLPRFEVWVRDVVAKPAKKKSGARTTAKVYDIPITQVLDFMLKSRSHMGEIFANPGGAVVGKVEGQKLGLAGEHLFPLPTRPARNARRNNMHGTLVQRMPQHNFDGFLAQDRTKVYVGDVVLCDLRDGGSPDPLQTPCRITATFFVEKSRRLVVTVQLFRDAHDVLG 393 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig725.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig725.22.1 >prot_P-littoralis_Contig725.22.1 ID=prot_P-littoralis_Contig725.22.1|Name=mRNA_P-littoralis_Contig725.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=387bp MQIAIWAIIHRPSRKSLQMLLDILAFVDASGCRFDPRDLPRSAEHFISSMback to top mRNA from alignment at P-littoralis_Contig725:99473..110753- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig725.22.1 ID=mRNA_P-littoralis_Contig725.22.1|Name=mRNA_P-littoralis_Contig725.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=11281bp|location=Sequence derived from alignment at P-littoralis_Contig725:99473..110753- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig725:99473..110753- >mRNA_P-littoralis_Contig725.22.1 ID=mRNA_P-littoralis_Contig725.22.1|Name=mRNA_P-littoralis_Contig725.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1161bp|location=Sequence derived from alignment at P-littoralis_Contig725:99473..110753- (Pylaiella littoralis U1_48)back to top |