mRNA_P-littoralis_Contig725.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig725.20.1
Unique NamemRNA_P-littoralis_Contig725.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig725.20.1 vs. uniprot
Match: A0A6H5KDU8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU8_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 5.450e-31
Identity = 62/118 (52.54%), Postives = 78/118 (66.10%), Query Frame = 2 
Query:   26 MDKGGMTVECISARLMKVRLQLTGSNGVAFVVAYAPTET------NGTSDKDGFWPSVRETVNAVPSREHVVVMMDANARTGRREDESTPHEVMGVYGRDKRNDNARRLVEFAASCRL 361
            + +GG TVECIS RLMKVRLQ+  + GV FVV YAPTET         + KD FW ++   +  V SR+H+VV+MDANARTGRR D  +  ++MG YGRD  N+N  RL+  AA  RL
Sbjct:    5 VGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCSDAKIMGAYGRDVMNNNGERLLGLAADNRL 122
[Close]
BLAST of mRNA_P-littoralis_Contig725.20.1 vs. uniprot
Match: A0A6H5KP87_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP87_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 7.780e-31
Identity = 64/126 (50.79%), Postives = 82/126 (65.08%), Query Frame = 2 
Query:    2 IKQSIVGGMDKGGMTVECISARLMKVRLQLTGSNGVAFVVAYAPTET------NGTSDKDGFWPSVRETVNAVPSREHVVVMMDANARTGRREDESTPHEVMGVYGRDKRNDNARRLVEFAASCRL 361
            IK+++   + +GG TVECIS RLMKVRLQ+  + GV FVV YAPTET         + KD FW ++   +  V SR+H+VV+MDANARTGRR D     ++MG YGRD  N+N  RL+  AA  RL
Sbjct:   57 IKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCCDAKIMGAYGRDIMNNNGERLLGLAADNRL 182
[Close]
BLAST of mRNA_P-littoralis_Contig725.20.1 vs. uniprot
Match: A0A6H5JQN0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN0_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 4.910e-30
Identity = 62/118 (52.54%), Postives = 77/118 (65.25%), Query Frame = 2 
Query:   26 MDKGGMTVECISARLMKVRLQLTGSNGVAFVVAYAPTET------NGTSDKDGFWPSVRETVNAVPSREHVVVMMDANARTGRREDESTPHEVMGVYGRDKRNDNARRLVEFAASCRL 361
            + +GG TVECIS RLMKVRLQ+  + GV FVV YAPTET         + KD FW ++   +  V SR+H+VV+MDANARTGRR D     ++MG YGRD  N+N  RL+  AA  RL
Sbjct:    5 VGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCCDAKIMGAYGRDIMNNNGERLLGLAADNRL 122
[Close]
BLAST of mRNA_P-littoralis_Contig725.20.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.570e-28
Identity = 64/126 (50.79%), Postives = 82/126 (65.08%), Query Frame = 2 
Query:    2 IKQSIVGGMDKGGMTVECISARLMKVRLQLTGSNGVAFVVAYAPTET------NGTSDKDGFWPSVRETVNAVPSREHVVVMMDANARTGRREDESTPHEVMGVYGRDKRNDNARRLVEFAASCRL 361
            IK+++   + +GG TVECIS RLMKVRLQ+  + GV FVV YAPTET         + KD FW ++   +  V SR+H+VV+MDANARTGRR D     ++MG YGRD  N+N  RL+  AA  RL
Sbjct:   57 IKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCCDAKIMGAYGRDIMNNNGERLLGLAADNRL 182
[Close]
BLAST of mRNA_P-littoralis_Contig725.20.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.570e-28
Identity = 64/126 (50.79%), Postives = 82/126 (65.08%), Query Frame = 2 
Query:    2 IKQSIVGGMDKGGMTVECISARLMKVRLQLTGSNGVAFVVAYAPTET------NGTSDKDGFWPSVRETVNAVPSREHVVVMMDANARTGRREDESTPHEVMGVYGRDKRNDNARRLVEFAASCRL 361
            IK+++   + +GG TVECIS RLMKVRLQ+  + GV FVV YAPTET         + KD FW ++   +  V SR+H+VV+MDANARTGRR D     ++MG YGRD  N+N  RL+  AA  RL
Sbjct:  169 IKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCCDAKIMGAYGRDIMNNNGERLLGLAADNRL 294
[Close]
BLAST of mRNA_P-littoralis_Contig725.20.1 vs. uniprot
Match: A0A6H5KDI8_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI8_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.390e-27
Identity = 63/119 (52.94%), Postives = 77/119 (64.71%), Query Frame = 2 
Query:   23 GMDKGGMTVECISARLMKVRLQLTGSNGVAFVVAYAPTET------NGTSDKDGFWPSVRETVNAVPSREHVVVMMDANARTGRREDESTPHEVMGVYGRDKRNDNARRLVEFAASCRL 361
            G  +GG TVECIS RLMKVRLQ+  + GV FVV YAPTET         + KD FW ++   +  V SR+H+VV+MDANARTGRR D     ++MG YGRD  N+N  RL+  AA  RL
Sbjct:  297 GGGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCCDAKIMGAYGRDIMNNNGERLLGLAADNRL 415
[Close]
BLAST of mRNA_P-littoralis_Contig725.20.1 vs. uniprot
Match: A0A6H5KQ63_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ63_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.600e-27
Identity = 62/126 (49.21%), Postives = 82/126 (65.08%), Query Frame = 2 
Query:    2 IKQSIVGGMDKGGMTVECISARLMKVRLQLTGSNGVAFVVAYAPTETNGTSD------KDGFWPSVRETVNAVPSREHVVVMMDANARTGRREDESTPHEVMGVYGRDKRNDNARRLVEFAASCRL 361
            IK+++   + + G TVECIS RLMKVRLQ+  + GV FVV YAPTET  T+       KD FW ++   +  V SR+H+VV+MDANARTGRR D     ++MG YGRD  N+N  RL+  A+  +L
Sbjct:   57 IKEAMWQSVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAKIMGAYGRDIMNNNGERLLGLASDNQL 182
[Close]
BLAST of mRNA_P-littoralis_Contig725.20.1 vs. uniprot
Match: A0A6H5JII6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JII6_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 3.910e-27
Identity = 62/126 (49.21%), Postives = 82/126 (65.08%), Query Frame = 2 
Query:    2 IKQSIVGGMDKGGMTVECISARLMKVRLQLTGSNGVAFVVAYAPTETNGTSD------KDGFWPSVRETVNAVPSREHVVVMMDANARTGRREDESTPHEVMGVYGRDKRNDNARRLVEFAASCRL 361
            IK+++   + + G TVECIS RLMKVRLQ+  + GV FVV YAPTET  T+       KD FW ++   +  V SR+H+VV+MDANARTGRR D     ++MG YGRD  N+N  RL+  A+  +L
Sbjct:   57 IKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAKIMGAYGRDIMNNNGERLLGLASDNQL 182
[Close]
BLAST of mRNA_P-littoralis_Contig725.20.1 vs. uniprot
Match: A0A6H5KCV1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCV1_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 4.150e-27
Identity = 62/126 (49.21%), Postives = 82/126 (65.08%), Query Frame = 2 
Query:    2 IKQSIVGGMDKGGMTVECISARLMKVRLQLTGSNGVAFVVAYAPTETNGTSD------KDGFWPSVRETVNAVPSREHVVVMMDANARTGRREDESTPHEVMGVYGRDKRNDNARRLVEFAASCRL 361
            IK+++   + + G TVECIS RLMKVRLQ+  + GV FVV YAPTET  T+       KD FW ++   +  V SR+H+VV+MDANARTGRR D     ++MG YGRD  N+N  RL+  A+  +L
Sbjct:   89 IKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDDNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAKIMGAYGRDIMNNNGERLLGLASDNQL 214
[Close]
BLAST of mRNA_P-littoralis_Contig725.20.1 vs. uniprot
Match: A0A6H5JVZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVZ7_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 4.940e-27
Identity = 61/114 (53.51%), Postives = 75/114 (65.79%), Query Frame = 2 
Query:   38 GMTVECISARLMKVRLQLTGSNGVAFVVAYAPTETNGTSD------KDGFWPSVRETVNAVPSREHVVVMMDANARTGRREDESTPHEVMGVYGRDKRNDNARRLVEFAASCRL 361
            G TVECIS RLMKVRLQ+  + GV FVV YAPTET  T+       KD FW ++   +  V SR+H+VV+MDANARTGRR D     ++MG YGRD  N+N  RL+  AA  +L
Sbjct:    9 GSTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETFRTTAGGDPNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAKIMGAYGRDIMNNNWERLLGLAADNQL 122
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig725.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDU8_9PHAE5.450e-3152.54Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KP87_9PHAE7.780e-3150.79Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JQN0_9PHAE4.910e-3052.54Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KC90_9PHAE1.570e-2850.79Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JQH5_9PHAE1.570e-2850.79Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KDI8_9PHAE1.390e-2752.94Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQ63_9PHAE2.600e-2749.21Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JII6_9PHAE3.910e-2749.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCV1_9PHAE4.150e-2749.21Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JVZ7_9PHAE4.940e-2753.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig725contigP-littoralis_Contig725:90285..90651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog6500.XP_005107471.1
PFAMsExo_endo_phos,Exo_endo_phos_2
Model size367
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.13e-09
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39VM0@33154|Opisthokonta,3BKMM@33208|Metazoa,3D1CS@33213|Bilateria
DescriptionEndonuclease/Exonuclease/phosphatase family
Cds size342
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791506.5320904-CDS-P-littoralis_Contig725:90284..906261680791506.5320904-CDS-P-littoralis_Contig725:90284..90626Pylaiella littoralis U1_48CDSP-littoralis_Contig725 90285..90626 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791506.5462203-UTR-P-littoralis_Contig725:90626..906511680791506.5462203-UTR-P-littoralis_Contig725:90626..90651Pylaiella littoralis U1_48UTRP-littoralis_Contig725 90627..90651 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig725.20.1prot_P-littoralis_Contig725.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig725 90285..90626 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig725.20.1

>prot_P-littoralis_Contig725.20.1 ID=prot_P-littoralis_Contig725.20.1|Name=mRNA_P-littoralis_Contig725.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=114bp
MDKGGMTVECISARLMKVRLQLTGSNGVAFVVAYAPTETNGTSDKDGFWP
SVRETVNAVPSREHVVVMMDANARTGRREDESTPHEVMGVYGRDKRNDNA
RRLVEFAASCRLL*
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mRNA from alignment at P-littoralis_Contig725:90285..90651-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig725.20.1 ID=mRNA_P-littoralis_Contig725.20.1|Name=mRNA_P-littoralis_Contig725.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=367bp|location=Sequence derived from alignment at P-littoralis_Contig725:90285..90651- (Pylaiella littoralis U1_48)
TATCAAGCAGTCCATCGTGGGTGGGATGGACAAAGGAGGTATGACGGTGG
AGTGCATTAGCGCAAGACTGATGAAGGTACGCCTGCAACTCACTGGCTCG
AACGGTGTAGCCTTTGTGGTTGCCTATGCACCCACCGAGACGAATGGGAC
TAGTGACAAAGATGGATTCTGGCCATCAGTGAGAGAGACAGTCAATGCAG
TACCTAGCAGGGAACACGTCGTGGTTATGATGGATGCGAACGCTCGAACT
GGTAGAAGAGAGGATGAGAGTACCCCTCATGAGGTGATGGGAGTGTACGG
GCGTGACAAGCGGAACGATAACGCGCGGAGACTGGTGGAATTTGCAGCAA
GCTGTAGGCTTTTGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig725:90285..90651-

>mRNA_P-littoralis_Contig725.20.1 ID=mRNA_P-littoralis_Contig725.20.1|Name=mRNA_P-littoralis_Contig725.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig725:90285..90651- (Pylaiella littoralis U1_48)
ATGGACAAAGGAGGTATGACGGTGGAGTGCATTAGCGCAAGACTGATGAA
GGTACGCCTGCAACTCACTGGCTCGAACGGTGTAGCCTTTGTGGTTGCCT
ATGCACCCACCGAGACGAATGGGACTAGTGACAAAGATGGATTCTGGCCA
TCAGTGAGAGAGACAGTCAATGCAGTACCTAGCAGGGAACACGTCGTGGT
TATGATGGATGCGAACGCTCGAACTGGTAGAAGAGAGGATGAGAGTACCC
CTCATGAGGTGATGGGAGTGTACGGGCGTGACAAGCGGAACGATAACGCG
CGGAGACTGGTGGAATTTGCAGCAAGCTGTAGGCTTTTGTGA
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