mRNA_P-littoralis_Contig725.29.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig725.29.1
Unique NamemRNA_P-littoralis_Contig725.29.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig725.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig725contigP-littoralis_Contig725:127055..127534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size480
Hectar predicted targeting categorymitochondrion
Exons1
Cds size330
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791506.0938318-UTR-P-littoralis_Contig725:127054..1271291680791506.0938318-UTR-P-littoralis_Contig725:127054..127129Pylaiella littoralis U1_48UTRP-littoralis_Contig725 127055..127129 -
1680791506.1262782-UTR-P-littoralis_Contig725:127459..1275341680791506.1262782-UTR-P-littoralis_Contig725:127459..127534Pylaiella littoralis U1_48UTRP-littoralis_Contig725 127460..127534 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791506.1088684-CDS-P-littoralis_Contig725:127129..1274591680791506.1088684-CDS-P-littoralis_Contig725:127129..127459Pylaiella littoralis U1_48CDSP-littoralis_Contig725 127130..127459 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig725.29.1prot_P-littoralis_Contig725.29.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig725 127130..127459 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig725.29.1

>prot_P-littoralis_Contig725.29.1 ID=prot_P-littoralis_Contig725.29.1|Name=mRNA_P-littoralis_Contig725.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=110bp
MLHYTGGRASFAALSTRGAGRGALHRVIYAETHLRTTKGHGRSPSPMRNT
CCRRRSLETVTSRLVALGEVHRPKYICKYSIDCGHTTVVPSPWRKHITIV
LTFCVPRVD*
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mRNA from alignment at P-littoralis_Contig725:127055..127534-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig725.29.1 ID=mRNA_P-littoralis_Contig725.29.1|Name=mRNA_P-littoralis_Contig725.29.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=480bp|location=Sequence derived from alignment at P-littoralis_Contig725:127055..127534- (Pylaiella littoralis U1_48)
AGCTTTGTTTTGTTGCATTCCGCTGCTGTCGGTGTTCCCGTACGTCCTCT
CGCTGCCCCATCCCTTGCCGATGATATGCTCCATTATACTGGTGGCAGAG
CTTCCTTTGCAGCGCTTTCTACAAGAGGGGCAGGGCGAGGCGCGTTACAT
CGGGTAATATACGCGGAGACGCATCTTCGCACGACGAAGGGCCATGGTCG
CTCACCGTCACCGATGCGAAACACGTGTTGCCGTCGACGCAGCCTTGAGA
CAGTCACATCCCGGCTTGTAGCTTTGGGTGAAGTGCACAGACCGAAATAT
ATATGCAAATACTCGATAGACTGCGGACACACCACTGTTGTTCCGAGCCC
TTGGCGGAAACACATCACAATAGTTTTGACATTTTGTGTGCCTCGTGTAG
ATTGATATGACACAAGATCAGAGGGGTTAATAGTCATACTAGCCAGGGGG
TGAGATACTGTTTCGATTCATCTGCACGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig725:127055..127534-

>mRNA_P-littoralis_Contig725.29.1 ID=mRNA_P-littoralis_Contig725.29.1|Name=mRNA_P-littoralis_Contig725.29.1|organism=Pylaiella littoralis U1_48|type=CDS|length=330bp|location=Sequence derived from alignment at P-littoralis_Contig725:127055..127534- (Pylaiella littoralis U1_48)
ATGCTCCATTATACTGGTGGCAGAGCTTCCTTTGCAGCGCTTTCTACAAG
AGGGGCAGGGCGAGGCGCGTTACATCGGGTAATATACGCGGAGACGCATC
TTCGCACGACGAAGGGCCATGGTCGCTCACCGTCACCGATGCGAAACACG
TGTTGCCGTCGACGCAGCCTTGAGACAGTCACATCCCGGCTTGTAGCTTT
GGGTGAAGTGCACAGACCGAAATATATATGCAAATACTCGATAGACTGCG
GACACACCACTGTTGTTCCGAGCCCTTGGCGGAAACACATCACAATAGTT
TTGACATTTTGTGTGCCTCGTGTAGATTGA
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