mRNA_P-littoralis_Contig725.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig725.17.1
Unique Name	mRNA_P-littoralis_Contig725.17.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig725.17.1 vs. uniprot
Match: A0A6H5JVW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVW3_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 3.790e-29
Identity = 71/111 (63.96%), Postives = 79/111 (71.17%), Query Frame = -1

Query:    5 DAPDDQPFEVLHVASSSTTNRSHLIPEQGPDLISGTLLMDCDSFTTRVRLHGGPTATSSALTTALLDTGSPASFVSDSVVQNMIAGGALTASCVRHSTSRSWGGFGDGPAL 337
            +AP D    V  VAS+S       + E GPDL+ GTLL+D +S+TTRV LHGGPTATS     ALLD+GSPASFVSDSVV  MIA GALTA  VR S SR WGGFGDGPAL
Sbjct:  287 EAPGDHAPGVHLVASTSACADQPPLLEHGPDLVGGTLLLDSNSYTTRVLLHGGPTATSQLARVALLDSGSPASFVSDSVVTAMIAAGALTAGSVRVSPSRRWGGFGDGPAL 397

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BLAST of mRNA_P-littoralis_Contig725.17.1 vs. uniprot
Match: A0A6H5JFD5_9PHAE (NADAR domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFD5_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 8.040e-29
Identity = 71/111 (63.96%), Postives = 77/111 (69.37%), Query Frame = -1

Query:    5 DAPDDQPFEVLHVASSSTTNRSHLIPEQGPDLISGTLLMDCDSFTTRVRLHGGPTATSSALTTALLDTGSPASFVSDSVVQNMIAGGALTASCVRHSTSRSWGGFGDGPAL 337
            DAP D    V  VAS+S       + E GPDL+ GTLL+D DS+TTRV LHGGPTATS     ALLD+GSPASFVSDSVV  MIA GALTA  VR    R WGGFGDGPAL
Sbjct:  583 DAPGDHAPGVHLVASTSACADQPPLLEHGPDLVGGTLLLDSDSYTTRVLLHGGPTATSQLARVALLDSGSPASFVSDSVVTAMIAAGALTAGSVRVLPFRRWGGFGDGPAL 693

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BLAST of mRNA_P-littoralis_Contig725.17.1 vs. uniprot
Match: A0A6H5KUS6_9PHAE (NADAR domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUS6_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 9.650e-28
Identity = 66/107 (61.68%), Postives = 74/107 (69.16%), Query Frame = -1

Query:   17 DAPDDQPFEVLHVASSSTTNRSHLIPEQGPDLISGTLLMDCDSFTTRVRLHGGPTATSSALTTALLDTGSPASFVSDSVVQNMIAGGALTASCVRHSTSRSWGGFGD 337
            DAP D    V  VAS+S       + E GPDL+ GTLL+D DS+TTRV LHGGPTATS     ALL++GSP SFVSDSVV  MIA G+LTA  VR S SR WGGFGD
Sbjct:  167 DAPGDHAPGVHLVASTSACADQPPLLEHGPDLVGGTLLLDSDSYTTRVLLHGGPTATSQLARVALLNSGSPVSFVSDSVVTAMIAAGSLTAGSVRVSPSRRWGGFGD 273

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BLAST of mRNA_P-littoralis_Contig725.17.1 vs. uniprot
Match: A0A6H5L323_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L323_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.510e-27
Identity = 69/111 (62.16%), Postives = 77/111 (69.37%), Query Frame = -1

Query:    5 DAPDDQPFEVLHVASSSTTNRSHLIPEQGPDLISGTLLMDCDSFTTRVRLHGGPTATSSALTTALLDTGSPASFVSDSVVQNMIAGGALTASCVRHSTSRSWGGFGDGPAL 337
            DAP D    V  VA++S       + E GPDL+ GTLL+D  S+TTRV LHGGPTATS     ALLD+GSPASFVSDSVV  MI  GALT+  VR S SR WGGFGDGPAL
Sbjct:  288 DAPGDHAPGVHLVAATSVCQDHPPLLEHGPDLVGGTLLLDSASYTTRVLLHGGPTATSQLPRVALLDSGSPASFVSDSVVTAMIDAGALTSGSVRVSPSRRWGGFGDGPAL 398

[Close]

BLAST of mRNA_P-littoralis_Contig725.17.1 vs. uniprot
Match: A0A6H5JK47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK47_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.550e-27
Identity = 69/111 (62.16%), Postives = 77/111 (69.37%), Query Frame = -1

Query:    5 DAPDDQPFEVLHVASSSTTNRSHLIPEQGPDLISGTLLMDCDSFTTRVRLHGGPTATSSALTTALLDTGSPASFVSDSVVQNMIAGGALTASCVRHSTSRSWGGFGDGPAL 337
            DAP D    V  VA++S       + E GPDL+ GTLL+D  S+TTRV LHGGPTATS     ALLD+GSPASFVSDSVV  MI  GALT+  VR S SR WGGFGDGPAL
Sbjct:  335 DAPGDHAPGVHLVAATSVCQDHPPLLEHGPDLVGGTLLLDSASYTTRVLLHGGPTATSQLPRVALLDSGSPASFVSDSVVTAMIDAGALTSGSVRVSPSRRWGGFGDGPAL 445

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BLAST of mRNA_P-littoralis_Contig725.17.1 vs. uniprot
Match: A0A6H5KUS0_9PHAE (NADAR domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUS0_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 7.020e-27
Identity = 68/111 (61.26%), Postives = 76/111 (68.47%), Query Frame = -1

Query:    5 DAPDDQPFEVLHVASSSTTNRSHLIPEQGPDLISGTLLMDCDSFTTRVRLHGGPTATSSALTTALLDTGSPASFVSDSVVQNMIAGGALTASCVRHSTSRSWGGFGDGPAL 337
            DAP D    V  VA++S       + E GPDL+ GTLL+D  S+TT V LHGGPTATS     ALLD+GSPASFVSDSVV  MI  GALT+  VR S SR WGGFGDGPAL
Sbjct:  288 DAPGDHAPGVHLVAATSVCQDHPPLLEHGPDLVGGTLLLDSASYTTWVLLHGGPTATSQLPRVALLDSGSPASFVSDSVVTAMIDAGALTSGSVRVSPSRRWGGFGDGPAL 398

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BLAST of mRNA_P-littoralis_Contig725.17.1 vs. uniprot
Match: A0A6H5L559_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L559_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 2.280e-24
Identity = 65/104 (62.50%), Postives = 70/104 (67.31%), Query Frame = -1

Query:    5 FEVLHVASSSTTNRSHLIPEQGPDLISGTLLMDCDSFTTRVRLHGGPTATSSALTTALLDTGSPASFVSDSVVQNMIAGGALTASCVRHSTSRSWGGFGDGPAL 316
              V  VAS+S       + + GPDL+  TLL+D DS TTRV LHGGPTATS     ALLD G PASFVSDSVV  MIA GALTA  VR S SR WGGFGDG AL
Sbjct:  142 LNVHLVASTSGCADQPPLLKHGPDLVGDTLLLDSDSSTTRVLLHGGPTATSQLTRVALLDPGFPASFVSDSVVTTMIAAGALTAGSVRVSPSRRWGGFGDGLAL 245

[Close]

BLAST of mRNA_P-littoralis_Contig725.17.1 vs. uniprot
Match: A0A6H5JSI4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI4_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 4.990e-23
Identity = 64/103 (62.14%), Postives = 69/103 (66.99%), Query Frame = -1

Query:   29 DAPDDQPFEVLHVASSSTTNRSHLIPEQGPDLISGTLLMDCDSFTTRVRLHGGPTATSSALTTALLDTGSPASFVSDSVVQNMIAGGALTASCVRHSTSRSWG 337
            DAP D    V  VAS+S       + E GPDL+SGTLL+D DS TTRV LHGGPTATS     ALLD+GSPASFVSDSVV  MIA GAL    VR S SR WG
Sbjct:  322 DAPGDHAPGVHLVASTSACADQPPLLEHGPDLVSGTLLLDSDSCTTRVLLHGGPTATSQLARVALLDSGSPASFVSDSVVTAMIAAGALKTGSVRVSPSRRWG 424

[Close]

BLAST of mRNA_P-littoralis_Contig725.17.1 vs. uniprot
Match: A0A6H5K8W4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W4_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 2.600e-21
Identity = 61/100 (61.00%), Postives = 68/100 (68.00%), Query Frame = -1

Query:   38 DAPDDQPFEVLHVASSSTTNRSHLIPEQGPDLISGTLLMDCDSFTTRVRLHGGPTATSSALTTALLDTGSPASFVSDSVVQNMIAGGALTASCVRHSTSR 337
            DAP D    V  VAS+S       + E GPDL+ GTLL+D DS+TTRV LHGGPTATS     ALLD+GSP SFVSDSVV  MIA GALTA  V  S+SR
Sbjct:  804 DAPGDHAPGVHLVASTSACADQPPLLEHGPDLVGGTLLLDSDSYTTRVLLHGGPTATSQLARVALLDSGSPTSFVSDSVVTAMIAAGALTAGSVVPSSSR 903

[Close]

BLAST of mRNA_P-littoralis_Contig725.17.1 vs. uniprot
Match: A0A6H5JDD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDD1_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.900e-20
Identity = 58/91 (63.74%), Postives = 64/91 (70.33%), Query Frame = -1

Query:   65 DAPDDQPFEVLHVASSSTTNRSHLIPEQGPDLISGTLLMDCDSFTTRVRLHGGPTATSSALTTALLDTGSPASFVSDSVVQNMIAGGALTA 337
            DAP D    V  VAS+S       + E GPDL+ GTLL+D DS+TTRV LHGGPTATS     ALLD+GSPASFVSDSVV  MIA GALTA
Sbjct:  287 DAPGDHAPGVHLVASTSACADQPPLLEHGPDLVGGTLLLDSDSYTTRVLLHGGPTATSQLARVALLDSGSPASFVSDSVVTAMIAAGALTA 377

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig725.17.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig725.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21


Match Name	E-value	Identity	Description
A0A6H5JVW3_9PHAE	3.790e-29	63.96	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JFD5_9PHAE	8.040e-29	63.96	NADAR domain-containing protein (Fragment) n=1 Tax...	[more]
A0A6H5KUS6_9PHAE	9.650e-28	61.68	NADAR domain-containing protein (Fragment) n=1 Tax...	[more]
A0A6H5L323_9PHAE	1.510e-27	62.16	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5JK47_9PHAE	1.550e-27	62.16	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KUS0_9PHAE	7.020e-27	61.26	NADAR domain-containing protein (Fragment) n=1 Tax...	[more]
A0A6H5L559_9PHAE	2.280e-24	62.50	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JSI4_9PHAE	4.990e-23	62.14	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5K8W4_9PHAE	2.600e-21	61.00	Reverse transcriptase domain-containing protein (F...	[more]
A0A6H5JDD1_9PHAE	1.900e-20	63.74	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig725	contig	P-littoralis_Contig725:75630..76323 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	695
Hectar predicted targeting category	other localisation
Exons	1
Cds size	426

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791506.0488756-CDS-P-littoralis_Contig725:75629..76055	1680791506.0488756-CDS-P-littoralis_Contig725:75629..76055	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig725 75630..76055 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791506.0603821-UTR-P-littoralis_Contig725:76055..76323	1680791506.0603821-UTR-P-littoralis_Contig725:76055..76323	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig725 76056..76323 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig725.17.1	prot_P-littoralis_Contig725.17.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig725 75630..76055 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig725:75630..76323-
coding sequence from alignment at P-littoralis_Contig725:75630..76323-

protein sequence of mRNA_P-littoralis_Contig725.17.1

>prot_P-littoralis_Contig725.17.1 ID=prot_P-littoralis_Contig725.17.1|Name=mRNA_P-littoralis_Contig725.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=142bp
MTAVRCRRGSDVENFERLIVRCILDVSRGLVGSRRRRRRRPKSRNGNRRR
CRRRPKVDGGSGRRRRRPNFVVGRGGRRRRRHLTRNWRLDLEDVSTGGVR
SRRRCWGNGRRGRMVLQQAANFHQRFPEQIFTLPCRRMGSVG

mRNA from alignment at P-littoralis_Contig725:75630..76323-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig725.17.1 ID=mRNA_P-littoralis_Contig725.17.1|Name=mRNA_P-littoralis_Contig725.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=694bp|location=Sequence derived from alignment at P-littoralis_Contig725:75630..76323- (Pylaiella littoralis U1_48)
TTTCCAAAGCAGGTCCATCACCAAAACCGCCCCAACTACGAGAGGTGGAG
TGTCGGACACAAGAGGCGGTAAGAGCACCGCCCGCGATCATATTTTGGAC
AACGGAGTCGCTCACAAAGGAAGCAGGGGATCCAGTGTCCAAAAGGGCGG
TGGTTAGAGCAGAAGAAGTGGCAGTTGGGCCGCCGTGAAGCCTCACTCGT
GTAGTGAAAGAGTCGCAATCCATCAAAAGGGTACCACTGATGAGGTCGGG
TCCTTGTTCAGGGATGAGATGACTGCGGTTCGTTGTAGACGAGGAAGCGA
CGTGGAGAACTTCGAAAGGTTGATCGTCCGGTGCATCTTGGATGTGTCCA
GAGGCTTGGTCGGAAGCAGGCGTAGACGGCGCAGAAGACCCAAAAGCAGG
AACGGAAACAGGCGTAGATGCAGAAGAAGACCCAAAGTTGACGGAGGTAG
TGGTAGACGCAGAAGAAGACCCAATTTCGTTGTCGGAAGAGGGGGTAGAC
GGCGCAGAAGACATCTCACGAGAAACTGGAGGCTGGATCTCGAAGATGTG
TCGACGGGGGGTGTTCGAAGTAGACGGCGGTGCTGGGGAAATGGAAGAAG
AGGGAGGATGGTTCTGCAACAAGCGGCGAACTTTCATCAACGTTTCCCCG
AGCAAATTTTTACCCTTCCATGTAGAAGGATGGGCAGCGTTGGG

Coding sequence (CDS) from alignment at P-littoralis_Contig725:75630..76323-

>mRNA_P-littoralis_Contig725.17.1 ID=mRNA_P-littoralis_Contig725.17.1|Name=mRNA_P-littoralis_Contig725.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=426bp|location=Sequence derived from alignment at P-littoralis_Contig725:75630..76323- (Pylaiella littoralis U1_48)
ATGACTGCGGTTCGTTGTAGACGAGGAAGCGACGTGGAGAACTTCGAAAG
GTTGATCGTCCGGTGCATCTTGGATGTGTCCAGAGGCTTGGTCGGAAGCA
GGCGTAGACGGCGCAGAAGACCCAAAAGCAGGAACGGAAACAGGCGTAGA
TGCAGAAGAAGACCCAAAGTTGACGGAGGTAGTGGTAGACGCAGAAGAAG
ACCCAATTTCGTTGTCGGAAGAGGGGGTAGACGGCGCAGAAGACATCTCA
CGAGAAACTGGAGGCTGGATCTCGAAGATGTGTCGACGGGGGGTGTTCGA
AGTAGACGGCGGTGCTGGGGAAATGGAAGAAGAGGGAGGATGGTTCTGCA
ACAAGCGGCGAACTTTCATCAACGTTTCCCCGAGCAAATTTTTACCCTTC
CATGTAGAAGGATGGGCAGCGTTGGG