mRNA_P-littoralis_Contig725.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig725.1.1
Unique NamemRNA_P-littoralis_Contig725.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig725.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig725contigP-littoralis_Contig725:3684..4539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size379
Hectar predicted targeting categoryother localisation
Exons2
Cds size375
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791505.904675-CDS-P-littoralis_Contig725:3685..37111680791505.904675-CDS-P-littoralis_Contig725:3685..3711Pylaiella littoralis U1_48CDSP-littoralis_Contig725 3686..3711 -
1680791505.9193723-CDS-P-littoralis_Contig725:4190..45391680791505.9193723-CDS-P-littoralis_Contig725:4190..4539Pylaiella littoralis U1_48CDSP-littoralis_Contig725 4191..4539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig725.1.1prot_P-littoralis_Contig725.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig725 3686..4539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig725.1.1

>prot_P-littoralis_Contig725.1.1 ID=prot_P-littoralis_Contig725.1.1|Name=mRNA_P-littoralis_Contig725.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=125bp
RTPRHIRRRSGATARPPTAVHLPLPAGTKRQRRLRLLAPKSRHPGNVKAA
TPQVTSTATYLQAGTLARGVVATTVGRAAMVIPARSPTPYGAITPAARTA
AASRAPTRAPALLDPTGPAAARRRD
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mRNA from alignment at P-littoralis_Contig725:3684..4539-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig725.1.1 ID=mRNA_P-littoralis_Contig725.1.1|Name=mRNA_P-littoralis_Contig725.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=856bp|location=Sequence derived from alignment at P-littoralis_Contig725:3684..4539- (Pylaiella littoralis U1_48)
CGCACACCGCGTCACATCCGCCGTCGAAGCGGAGCAACCGCACGGCCTCC
AACGGCAGTGCATCTTCCTCTTCCGGCCGGAACAAAAAGGCAGCGAAGGC
TTCGGCTTCTAGCTCCAAAAAGCCGGCACCCCGGAAACGTGAAGGCCGCG
ACGCCGCAAGTGACGAGCACAGCGACGTACCTTCAGGCGGGCACGCTCGC
TCGAGGCGTAGTCGCCACCACCGTGGGTCGGGCAGCGATGGTGATTCCAG
CGAGAAGTCCAACACCATACGGAGCTATCACTCCGGCAGCGAGGACGGCG
GCAGCGTCTCGAGCTCCCACACGAGCGCCAGCTCTACTAGACCCGACAGG
CAAGTGACTCCTTCGCTAGACACAGTTGCCTCCGGCAACCACGTTGCACT
TGCCCGCAACGGTGCCATGGTAGTCTACGACGGCGCGCAAAATGATAGGC
CTCTCTTCGCGTGGGGCAAGAGATCGCCAACAGGACATTGACGCTGACAA
TTTTAAACAGCAAGAGAAGCACCACATTTCGGTAACTCGTAAATACCCAA
GGACCGAGTTTAGAAATGTCGAGCAGATTCACCCCCAGCTGCCTTTCCCT
GCTTCTGTGAGCGCTAACAGTAATGCATTGGGACAATTTTTGGATACTAC
CAAAAAGGCAATGGCGGATATTCTCAGCCAAGCTGACCCTTTGCTTCTCT
TCGAGAATTCTTCTGGGTGGGTTCGGGGTTGGGAAAGACCCATCCAGAAG
TGCATCACCAAAACCATCCCGCCGCGAACTGATGAAACAGCAAATTTGAC
CTCTGTTGTCACCACCCTGTTCGACCAGGTCCGGCAGCGGCTCGACGAAG
GGATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig725:3684..4539-

>mRNA_P-littoralis_Contig725.1.1 ID=mRNA_P-littoralis_Contig725.1.1|Name=mRNA_P-littoralis_Contig725.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=375bp|location=Sequence derived from alignment at P-littoralis_Contig725:3684..4539- (Pylaiella littoralis U1_48)
CGCACACCGCGTCACATCCGCCGTCGAAGCGGAGCAACCGCACGGCCTCC
AACGGCAGTGCATCTTCCTCTTCCGGCCGGAACAAAAAGGCAGCGAAGGC
TTCGGCTTCTAGCTCCAAAAAGCCGGCACCCCGGAAACGTGAAGGCCGCG
ACGCCGCAAGTGACGAGCACAGCGACGTACCTTCAGGCGGGCACGCTCGC
TCGAGGCGTAGTCGCCACCACCGTGGGTCGGGCAGCGATGGTGATTCCAG
CGAGAAGTCCAACACCATACGGAGCTATCACTCCGGCAGCGAGGACGGCG
GCAGCGTCTCGAGCTCCCACACGAGCGCCAGCTCTACTAGACCCGACAGG
TCCGGCAGCGGCTCGACGAAGGGAT
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