mRNA_P-littoralis_Contig723.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig723.5.1
Unique NamemRNA_P-littoralis_Contig723.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig723.5.1 vs. uniprot
Match: C3ZXU5_BRAFL (Uncharacterized protein (Fragment) n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZXU5_BRAFL)

HSP 1 Score: 58.5 bits (140), Expect = 1.250e-7
Identity = 36/97 (37.11%), Postives = 59/97 (60.82%), Query Frame = 3 
Query:   51 NVEHIYVDDNSLTT-------VPAEVFQGLGKLQVLNMNRDALTALPGNLFQQQIVNSTTGFRQLHELWLDQNYLTTLPAELFEKLRSLDLLDLRLN 320
            ++E +Y+++NSLT        V  + F GLG LQ+L+++++ LT++PG+L            R L +L+L+ N L+TLP + F+K+ SL  LDL  N
Sbjct:  119 DLERLYLNNNSLTNDGIADEAVADQAFDGLGDLQLLDLSKNNLTSIPGDLP-----------RSLQKLYLEGNELSTLPLQSFKKVGSLTELDLSNN 204
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BLAST of mRNA_P-littoralis_Contig723.5.1 vs. uniprot
Match: D8LR92_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR92_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 2.630e-7
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 3 
Query:  183 QQQIVNSTTGFRQLHELWLDQNYLTTLPAELFEKLRSLDLLDLRLNPDLQCIP 341
            Q Q  NST G   L ++W++ N L+TLPA LF+ L  L  LDLRLNPDLQC+P
Sbjct:  507 QPQDTNST-GPGHLQDIWMNMNLLSTLPAGLFDGLDMLTSLDLRLNPDLQCVP 558
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BLAST of mRNA_P-littoralis_Contig723.5.1 vs. uniprot
Match: A0A6P6PUC9_CARAU (malignant fibrous histiocytoma-amplified sequence 1-like isoform X1 n=2 Tax=Carassius auratus TaxID=7957 RepID=A0A6P6PUC9_CARAU)

HSP 1 Score: 52.8 bits (125), Expect = 1.530e-5
Identity = 39/122 (31.97%), Postives = 61/122 (50.00%), Query Frame = 3 
Query:   30 ISSRGCGNVEHIYVDDNSLTTVPAEVFQGLGKLQVLNMNRDALTALPGNLFQ-QQIV------------NSTTGFRQLHELWLDQNYLTTLPAELFEKLRSLDLLDLRLNPDLQCIPNNVVA 356
            +  RG   +E +Y++ N++ T+P  VF  L KL+ L M+ + L  LP ++ + Q +V            +   G   L EL++++N LT LP  LF+   SL L     NP L+  P  V A
Sbjct:   72 VDIRGLHQLEKLYINQNTIKTIPENVFPSLEKLRFLKMSTNRLEQLPQDINRCQHLVYLNLSNNCLRDLDPVVGLSNLKELYVERNRLTDLPELLFQN-SSLTLFKANGNP-LRKPPQEVCA 191
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BLAST of mRNA_P-littoralis_Contig723.5.1 vs. uniprot
Match: A0A4W5RHQ0_9TELE (Uncharacterized protein n=1 Tax=Hucho hucho TaxID=62062 RepID=A0A4W5RHQ0_9TELE)

HSP 1 Score: 51.2 bits (121), Expect = 2.420e-5
Identity = 29/82 (35.37%), Postives = 46/82 (56.10%), Query Frame = 3 
Query:   78 NSLTTVPAEVFQGLGKLQVLNMNRDALTALPGNLFQQQIVN-------------STTGFRQLHELWLDQNYLTTLPAELFEK 284
            N++  +P +VF  LGKLQ L ++ + L  LP +L Q   ++             +  G  +L EL+++QN LT LPA+LF+K
Sbjct:   68 NNIKVIPEDVFPHLGKLQFLKLSTNRLAKLPADLSQCHSLSYLNLSNNCLKDLQALVGLPKLKELFVEQNSLTELPAQLFQK 149
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig723.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
C3ZXU5_BRAFL1.250e-737.11Uncharacterized protein (Fragment) n=1 Tax=Branchi... [more]
D8LR92_ECTSI2.630e-756.60Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
A0A6P6PUC9_CARAU1.530e-531.97malignant fibrous histiocytoma-amplified sequence ... [more]
A0A4W5RHQ0_9TELE2.420e-535.37Uncharacterized protein n=1 Tax=Hucho hucho TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig723contigP-littoralis_Contig723:95600..95955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LR92
PFAMsLRR_8
Model size358
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.06e-09
EggNOG OGsCOG4886@1|root,KOG4237@2759|Eukaryota
Descriptioncorticospinal neuron axon guidance through spinal cord
Cds size216
COG categoryKLT
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791504.2791135-UTR-P-littoralis_Contig723:95599..957391680791504.2791135-UTR-P-littoralis_Contig723:95599..95739Pylaiella littoralis U1_48UTRP-littoralis_Contig723 95600..95739 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791504.2935116-CDS-P-littoralis_Contig723:95739..959551680791504.2935116-CDS-P-littoralis_Contig723:95739..95955Pylaiella littoralis U1_48CDSP-littoralis_Contig723 95740..95955 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig723.5.1prot_P-littoralis_Contig723.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig723 95740..95955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig723.5.1

>prot_P-littoralis_Contig723.5.1 ID=prot_P-littoralis_Contig723.5.1|Name=mRNA_P-littoralis_Contig723.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=72bp
MNRDALTALPGNLFQQQIVNSTTGFRQLHELWLDQNYLTTLPAELFEKLR
SLDLLDLRLNPDLQCIPNNVVA
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mRNA from alignment at P-littoralis_Contig723:95600..95955+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig723.5.1 ID=mRNA_P-littoralis_Contig723.5.1|Name=mRNA_P-littoralis_Contig723.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=356bp|location=Sequence derived from alignment at P-littoralis_Contig723:95600..95955+ (Pylaiella littoralis U1_48)
CTACAACTACTTGACCGCTATCCCGGCAGATCTCTTCAAGGGGGTGCGGA
AACGTAGAGCACATTTACGTCGACGACAACAGCCTGACCACCGTGCCAGC
GGAGGTCTTTCAAGGACTTGGGAAGCTACAGGTCCTAAACATGAACCGGG
ACGCTTTGACAGCCCTACCGGGAAACCTTTTCCAGCAGCAAATCGTCAAT
TCTACAACTGGGTTCAGACAGCTTCACGAACTGTGGCTCGACCAGAACTA
CCTTACTACTCTTCCGGCTGAGCTGTTCGAAAAACTTAGGAGTCTCGATT
TACTGGACCTGCGGCTGAACCCCGATCTCCAGTGCATTCCCAACAACGTG
GTTGCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig723:95600..95955+

>mRNA_P-littoralis_Contig723.5.1 ID=mRNA_P-littoralis_Contig723.5.1|Name=mRNA_P-littoralis_Contig723.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=216bp|location=Sequence derived from alignment at P-littoralis_Contig723:95600..95955+ (Pylaiella littoralis U1_48)
ATGAACCGGGACGCTTTGACAGCCCTACCGGGAAACCTTTTCCAGCAGCA
AATCGTCAATTCTACAACTGGGTTCAGACAGCTTCACGAACTGTGGCTCG
ACCAGAACTACCTTACTACTCTTCCGGCTGAGCTGTTCGAAAAACTTAGG
AGTCTCGATTTACTGGACCTGCGGCTGAACCCCGATCTCCAGTGCATTCC
CAACAACGTGGTTGCT
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