mRNA_P-littoralis_Contig1182.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1182.12.1
Unique NamemRNA_P-littoralis_Contig1182.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1182.12.1 vs. uniprot
Match: A0A6H5L7S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7S2_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 7.260e-66
Identity = 135/256 (52.73%), Postives = 159/256 (62.11%), Query Frame = 2
Query:  434 MACEARIIRVLRALEYPWVDDLATTPGLGSAAPLSLGARPHDLAKIVSWIEDRKVRDLAIPDREPLRTPGPGWESAFFSYLQGTGCPYDFTPTPGTRAGGGDEEGRTGPSDGSDSNLVLRGLSWLSSEAVAREFEDDNGKDYKGAARRLLSTIPRPSPPRQPEKSGQPLPPEEPVTXXXXXXXXXXXXXXXXDGFEDGKKVFHE-LKGFAAGVETGNEACNSVATVLRMMFLSDLRDLQDEVNGVIALAQSSRTKR 1198
            MACEARIIR LR +EYP +D ++ +   G     SL A+PH+LAKIV WIEDRK+R L I DREPLRTPGP WE AFFSYLQ  GCP DF  T G   GGG+  G            VLRG+SWL +EAVA +FED NGK+YK AAR LL    R SP       G        V                  G  +  + F E L+GF AGVETG+EAC+SVATVLRM++LSDLR LQ+EVNGVI LAQS+R ++
Sbjct:    1 MACEARIIRALRTMEYPGLDHISGSAATGR----SLVAQPHELAKIVGWIEDRKIRGLTISDREPLRTPGPKWEEAFFSYLQEMGCPNDFKATGG---GGGEPSGAA----------VLRGVSWLVTEAVAYDFED-NGKEYKAAARELLLAKTRFSPQAMGGARGGSSSDPSSVQPEPAQQTISTAGDAMDIGSGEEHRTFREQLRGFTAGVETGDEACDSVATVLRMLYLSDLRSLQNEVNGVIDLAQSTRREQ 238          
BLAST of mRNA_P-littoralis_Contig1182.12.1 vs. uniprot
Match: D7G3K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3K0_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 4.950e-58
Identity = 132/244 (54.10%), Postives = 154/244 (63.11%), Query Frame = 2
Query:  473 LEYPWVDDLATTPGLGSAAP-LSLGARPHDLAKIVSWIEDRKVRDLAIPDREPLRTPGPGWESAFFSYLQGTGCPYDFTPTPGTRAGGGDEEGRTGPSDGSDSNLVLRGLSWLSSEAVAREFEDDNGKDYKGAARRLLSTIPRPSPPRQPEKSGQPLPPEEPVTXXXXXXXXXXXXXXXXDGFEDGKKVFHE-LKGFAAGVETGNEACNSVATVLRMMFLSDLRDLQDEVNGVIALAQSSRTKR 1198
            +EYP +D ++     GSAA   SL A+PH+LAKIV WIEDRKVR LAI DREPLRTPGP WE   FSYLQ  GCP DF  T     GGG E     PS    S  VLRG+SWL +EAVA +F DDNGK+YK AAR LL+  PR SP       G        V                  G     ++F E L+GF AGVETG+EAC+SVATVLRM++LSDLR+LQDEVNGVIALAQS+R ++
Sbjct:    1 MEYPGLDHVS-----GSAASGRSLVAQPHELAKIVGWIEDRKVRGLAISDREPLRTPGPKWEEVLFSYLQEMGCPNDFKAT----GGGGGE-----PS----SAAVLRGVSWLVTEAVACDF-DDNGKEYKAAARELLAN-PRCSPQAVGGARGGSSSDHGSVQPEPAQPTISTAGVAMDIGPGGEHRIFREQLRGFTAGVETGDEACDSVATVLRMLYLSDLRNLQDEVNGVIALAQSTRREQ 224          
BLAST of mRNA_P-littoralis_Contig1182.12.1 vs. uniprot
Match: A0A7S3Y2A7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2A7_HETAK)

HSP 1 Score: 78.2 bits (191), Expect = 3.290e-12
Identity = 53/144 (36.81%), Postives = 66/144 (45.83%), Query Frame = 2
Query:  440 CEARIIRVLRALEYPWVDDLATTPGLGSAAPLSLGARPHDLAKIVSWIEDRKVRDLAIPDREPLRTPGPGWESAFFSYLQGTGCPYDFTPTPGTRAGGGDEEGRTGPSDGSDSNLVLRGLSWLSSEAVAREFEDDNGKDYKGAA 871
            C   I R L AL YP  D                   P +L K+V+W+EDRK+R  +I +R  LR PGP W SAF  YL+   CP  +             EGR    +GS     LRGL WL  +A+A E+ED  G  Y   A
Sbjct:   20 CLENIERSLTALGYPAKDSFDHE-------------EPVELTKLVAWLEDRKIRLYSIEERTALRNPGPAWGSAFKKYLEDLECPQSYIHA----------EGRL---EGSS----LRGLRWLLHKAIAYEYED-KGSTYNARA 132          
BLAST of mRNA_P-littoralis_Contig1182.12.1 vs. uniprot
Match: A0A7S3K0K5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K0K5_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.520e-9
Identity = 66/259 (25.48%), Postives = 96/259 (37.07%), Query Frame = 2
Query:  434 MACEARIIRVLRALEYPWVDDLATTPGLGSAAPLSLGARPHDLAKIVSWIEDRKVRDLAIPDREPLRTPGPGWESAFFSYLQGTGCPYDFTPTPGTRAGGGDEEGRTG----------PSDGSDSNLVLRGLSWLSSEAVAREFEDDNGKDYKGAARRLLSTIPRPSPPRQPEKSGQPLPPEEPVTXXXXXXXXXXXXXXXXDGFEDGKKVFHELKGFAAGVETGNEACNSVATVLRMMFLSDLRDLQDEVNGVIALAQ 1180
            MA  A   R+L +LEYP   D+                    +A ++SW+EDRK+R   I +R PLRT GP W  AF  YL    CP+             D E R G            DG D+       +WL S+  AR  E +  +         LST                    +                            F E    + G  T N+  +++A +LR+ +L+DLR+LQ+ +N ++  AQ
Sbjct:    1 MAHLASYTRMLESLEYPLELDVKDD---------------QSIAMMISWLEDRKIRIWEIEERIPLRTAGPQWIEAFERYLNDLDCPHQ------------DMERRVGFVLQQAVACAYEDGEDA-FKADAEAWLMSQQQARIQEAEINQLATLLDLHNLST--------------------DDALLRICAAAAHVADAKDNTTARTRHSFFQENPQLSLGFTTNNQDTDNIAKILRLFYLADLRNLQNNINAILVRAQ 211          
BLAST of mRNA_P-littoralis_Contig1182.12.1 vs. uniprot
Match: A0A7S2HTN7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HTN7_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.520e-8
Identity = 45/137 (32.85%), Postives = 69/137 (50.36%), Query Frame = 2
Query:  443 EARIIRVLRALEYPWVDDLATTPGLGSAAPLSLGARPHDLAKIVSWIEDRKVRDLAIPDREPLRTP--GPGWESAFFSYLQGTGCPYDFTPTPGTRAGGGDEEGRTGPSDGSDSNLVL--RGLSWLSSEAVAREFED 841
            ++ + R L AL YP  +  +         P SL     D+ K+V+W+EDRK+R L I +R+PLR    GP W +AF SYL    CPY++T                G +D S +  +   + L+W+  +A++ E ED
Sbjct:   12 KSGLCRWLGALAYPSAETFS---------PFSL----DDVVKLVTWLEDRKIRILDIDERKPLRQANNGPAWTNAFQSYLASLECPYEWTGI--------------GMTDTSSAQALQDRKVLTWIIQKAISYECED 121          
BLAST of mRNA_P-littoralis_Contig1182.12.1 vs. uniprot
Match: A0A7S1C4J5_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C4J5_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.900e-8
Identity = 71/277 (25.63%), Postives = 107/277 (38.63%), Query Frame = 2
Query:  434 MACEARIIRVLRALEYP-W----VDDLATTPGLGSAAPLSLGARPHDLAKIVSWIEDRKVRDLAIPDREPLRTPGPGWESAFFSYLQGTGCPYDFTPTPGTRAGGGDEEGRTGPSDGSDSNLVLRGLSWLSSEAVAREFEDDNGKDYKGAARRLLS---TIPRPSPPRQPEKSGQPLPPEEPVTXXXXXXXXXXXXXXXXDGFEDGKKVFHE-------------------LKGFAAGVETGNEACNSVATVLRMMFLSDLRDLQDEVNGVIALAQS 1183
            MA EA   R LRAL YP W    +DD                   +++  +V+++EDRKVR L +  R PLRT GPGW  AF SY+ G              A GG+ +  T          +   + WL   A+  E+ED   +    AA R+ S   + P        E+          +T                +  E  ++                       + G + G+ TG+ A +    V R++++SDLR LQD VN ++   Q+
Sbjct:    1 MAEEASTRRRLRALAYPRWREFRLDD------------------DNEVVLLVAFLEDRKVRALPMEARAPLRTAGPGWHDAFLSYVGGDPLNCPLLSAAAIEAAGGEVDRAT----------LGACVMWLIGHAIGVEYEDV-AEAANAAAVRVASDSGSAPASGASGGGEEGADAAAVRAALTPIAALLGVRVDGRAPAELTEAVRRAVQRKVVPAVEAAGGAGRTLPLTMDGISGGLLTGDAALDRAIAVARLLYVSDLRQLQDSVNELLVSVQA 248          
BLAST of mRNA_P-littoralis_Contig1182.12.1 vs. uniprot
Match: A0A7S4A3V6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A3V6_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 9.950e-8
Identity = 47/132 (35.61%), Postives = 60/132 (45.45%), Query Frame = 2
Query:  458 RVLRALEYPWVDDLATTPGLGSAAPLSLGARPHDLAKIVSWIEDRKVRDLAIPDREPLRTPGPGWESAFFSYLQGTGCPYDFTPTPGTRAGGGDEEGRTGPSDGSDSNLVLRGLSWLSSEAVAREFEDDNGK 853
            R+L ALEYP+       P  G AA +         AK+VSW+EDRK+R   I  R+PLRT G  +++AF SYLQ   CP    P+                          + L WL  EAV  E ED+  K
Sbjct:    8 RLLDALEYPF-------PFAGDAAAV---------AKLVSWVEDRKIRLWEIEQRKPLRTAGVEFDAAFQSYLQELECPV-LQPS--------------------------QALVWLLHEAVKCELEDEAAK 96          
BLAST of mRNA_P-littoralis_Contig1182.12.1 vs. uniprot
Match: A0A7S0TRU3_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TRU3_HEMAN)

HSP 1 Score: 62.8 bits (151), Expect = 4.590e-7
Identity = 69/287 (24.04%), Postives = 108/287 (37.63%), Query Frame = 2
Query:  434 MACEARIIRVLRALEYPWVDDLATTPGLGSAAPLSLGARPHDLAKIVSWIEDRKVRDLAIPDREPLR-TPGPGWESAFFSYLQGTGCPYDFTPTPGTRAGGGDEEGRTGPSDGSDSNLVLRGLSWLSSEAVAREFEDDNGKDYKGAARRLLSTIPR--PSPPRQPEKSGQPLP------------------------PEEP-----------VTXXXXXXXXXXXXXXXXDGFEDGKKVFHELKGFAAGVETGNEACNSVATVLRMMFLSDLRDLQDEVNGVIALAQ 1180
            M   A  +R L+ALE+P    +      G                +V W+E+RK+R     DR+ L+   G GW+ A   Y+                    DE G   PS   D+    +   WL+S A+  E+ D   K  K  A RL    P   P+    P ++ + LP                        PE+            V                  G +  ++   ++K +  G +TG+E  N  A++LR+++++DLR LQDEVN +I+  Q
Sbjct:   16 MILGAACVRKLQALEHPQAAAMGDLDETG-------------FRNLVLWLENRKIRYYTEADRKGLQDVKGKGWDDALLKYM--------------------DELGAGKPSVKGDT-AKHQVADWLASYAIGMEYSDRASKLSKIIAPRLAPAAPTHAPAAAAAPAQAKESLPEIELDAESPEFVEALHKLAATLGVPEDDSAEAMVRACAGVLKRKLSAEALAKAGSSQGGGKSKRRKAFDVKDYPPGFDTGDEELNKAASLLRLLYVADLRKLQDEVNALISQMQ 268          
BLAST of mRNA_P-littoralis_Contig1182.12.1 vs. uniprot
Match: T1K580_TETUR (Uncharacterized protein n=1 Tax=Tetranychus urticae TaxID=32264 RepID=T1K580_TETUR)

HSP 1 Score: 57.4 bits (137), Expect = 1.940e-5
Identity = 60/240 (25.00%), Postives = 97/240 (40.42%), Query Frame = 2
Query:  554 HDLAKIVSWIEDRKVRDLAIPDREPLRT-PGPGWESAFFSYLQGTGCPYDFTPTPGTRAGGGDEEGRTGPSDGSDSNLVLRGLSWLSSEAVAREFEDDNGKDYKGAARRLLSTIPRPSPPRQPEKS----------------GQ-------PLPPEEPVTXXXXXXXXXXXXXXXXDGFE------DGKKVFHELKGFAAGVETGNEACNSVATVLRMMFLSDLRDLQDEVNGVIALAQS 1183
            +    +V+W+ED+K+R   I +R  LR    P WE+AF  YL+   CP+D                        D  LVL    WL S AV  ++ D+  K YK    +L+    + S P+  + +                G+       P  P+  +T                   E       G+K F  L+    G +  ++  +  A VLR+++++DLRDLQ+++N VI   Q+
Sbjct:   23 NSFRNLVAWLEDQKIRHYPIEERSGLRKISSPDWENAFKKYLESLKCPFDVK----------------------DRKLVL---DWLISTAVRLDYNDNFDK-YKDVTGKLVKN--QASNPQMVQANPLDNLDFNAKEFKHGIGELAKLLKVPQHPDHLITLKAINHLIKTRLTADALQSEKEELETSGEKSF-TLENSILGFDVKDQNLSRAAKVLRILYINDLRDLQNKINQVIVSIQA 233          
BLAST of mRNA_P-littoralis_Contig1182.12.1 vs. uniprot
Match: A0A087SUE4_AUXPR (UPF0568 protein C14orf166-like protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SUE4_AUXPR)

HSP 1 Score: 57.4 bits (137), Expect = 2.270e-5
Identity = 74/264 (28.03%), Postives = 101/264 (38.26%), Query Frame = 2
Query:  464 LRALEYPWVDDLATTPGLGSAAPLSLGARPHDLAKIVSWIEDRKVRDLAIPDREPL-RTPGPGWESAFFSYLQGTGCPYDFTPTPGT------RAGGGDEEGRTGPSDGSDSNLVLRG---LSWLSSEAVAREFEDDNGKDYKGAARRLLSTIPRPSPPRQPEKSGQPLPPEEPVTXXXXXXXXXXXXXXXXDGFED-------GKKVFHE------LKGFAAGVETGNEACNSVATVLRMMFLSDLRDLQDEVNGVIALAQSS 1186
            LRAL+YP        P    A+     ARP     +V+W+E++K+R   IP R+ L  T    W +A+  YL    CP      P T      RA   +   R    + S S  V  G     W  SE     F D        A  R+L T+       Q E +        P T                 G ED       G++          L GF  G  TG+   ++ AT+LRM++L DLR LQD V+  +   Q+S
Sbjct:    8 LRALKYPGASSF---PSDTRASIEVEAARP-----LVTWLENQKIRHYTIPQRQGLLATSADDWRAAYGQYLTALECPCSSEGLPATLQWLCSRAVSLEYADRNEQLNASTSAAVEVGGAVSDW--SEHSLPPFADTASPAVAAAVMRMLRTLHM----DQEEVT--------PSTVERLSSVLDTQVLPALPGDEDTAAPSGTGRQGVSAAGPIALLAGFPLGFSTGSPLSDAAATILRMLYLRDLRGLQDVVDRELERVQAS 249          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1182.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5L7S2_9PHAE7.260e-6652.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3K0_ECTSI4.950e-5854.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3Y2A7_HETAK3.290e-1236.81Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3K0K5_9STRA2.520e-925.48Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2HTN7_9STRA1.520e-832.85Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1C4J5_9STRA1.900e-825.63Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S4A3V6_9STRA9.950e-835.61Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S0TRU3_HEMAN4.590e-724.04Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
T1K580_TETUR1.940e-525.00Uncharacterized protein n=1 Tax=Tetranychus urtica... [more]
A0A087SUE4_AUXPR2.270e-528.03UPF0568 protein C14orf166-like protein n=2 Tax=Aux... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1182contigP-littoralis_Contig1182:34267..38301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G3K0
Preferred nameC14orf166
PFAMsRLL
Model size1919
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K15433,ko:K18532
KEGG ReactionR00127,R01547
KEGG Pathwayko00230,ko01100,ko01110,ko01130,ko03008,map00230,map01100,map01110,map01130,map03008
KEGG ModuleM00049
Hectar predicted targeting categoryother localisation
GOsGO:0000394,GO:0000993,GO:0001098,GO:0001099,GO:0001932,GO:0001933,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0006139,GO:0006355,GO:0006357,GO:0006388,GO:0006396,GO:0006399,GO:0006403,GO:0006469,GO:0006725,GO:0006807,GO:0006810,GO:0008033,GO:0008150,GO:0008152,GO:0008380,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0015630,GO:0015931,GO:0016070,GO:0019219,GO:0019220,GO:0019222,GO:0019899,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032991,GO:0033036,GO:0033673,GO:0034470,GO:0034641,GO:0034660,GO:0042325,GO:0042326,GO:0042802,GO:0043086,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0044092,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045859,GO:0045893,GO:0045935,GO:0045936,GO:0045944,GO:0046483,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051338,GO:0051348,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070063,GO:0071702,GO:0071704,GO:0071705,GO:0072669,GO:0072686,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons3
Evalue4.15e-63
EggNOG OGsKOG4380@1|root,KOG4380@2759|Eukaryota
Ec32 ortholog descriptionProtein of unknown function UPF0568
Ec32 orthologEc-19_004940.1
EC2.7.4.3
DescriptionRNA polymerase II complex binding
Cds size774
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03016,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789496.4721081-UTR-P-littoralis_Contig1182:34266..346991680789496.4721081-UTR-P-littoralis_Contig1182:34266..34699Pylaiella littoralis U1_48UTRP-littoralis_Contig1182 34267..34699 +
1680789496.5249734-UTR-P-littoralis_Contig1182:37589..383011680789496.5249734-UTR-P-littoralis_Contig1182:37589..38301Pylaiella littoralis U1_48UTRP-littoralis_Contig1182 37590..38301 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789496.487604-CDS-P-littoralis_Contig1182:34699..348611680789496.487604-CDS-P-littoralis_Contig1182:34699..34861Pylaiella littoralis U1_48CDSP-littoralis_Contig1182 34700..34861 +
1680789496.5009158-CDS-P-littoralis_Contig1182:36054..363361680789496.5009158-CDS-P-littoralis_Contig1182:36054..36336Pylaiella littoralis U1_48CDSP-littoralis_Contig1182 36055..36336 +
1680789496.5137103-CDS-P-littoralis_Contig1182:37259..375891680789496.5137103-CDS-P-littoralis_Contig1182:37259..37589Pylaiella littoralis U1_48CDSP-littoralis_Contig1182 37260..37589 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1182.12.1prot_P-littoralis_Contig1182.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1182 34700..37589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1182.12.1

>prot_P-littoralis_Contig1182.12.1 ID=prot_P-littoralis_Contig1182.12.1|Name=mRNA_P-littoralis_Contig1182.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=258bp
MACEARIIRVLRALEYPWVDDLATTPGLGSAAPLSLGARPHDLAKIVSWI
EDRKVRDLAIPDREPLRTPGPGWESAFFSYLQGTGCPYDFTPTPGTRAGG
GDEEGRTGPSDGSDSNLVLRGLSWLSSEAVAREFEDDNGKDYKGAARRLL
STIPRPSPPRQPEKSGQPLPPEEPVTAAAAAAAAAGIVATDDDGFEDGKK
VFHELKGFAAGVETGNEACNSVATVLRMMFLSDLRDLQDEVNGVIALAQS
SRTKRTS*
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mRNA from alignment at P-littoralis_Contig1182:34267..38301+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1182.12.1 ID=mRNA_P-littoralis_Contig1182.12.1|Name=mRNA_P-littoralis_Contig1182.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4035bp|location=Sequence derived from alignment at P-littoralis_Contig1182:34267..38301+ (Pylaiella littoralis U1_48)
ACCCCCACCTTCATTCTGCGGTACATGCGTGAGATTTTTTCTCGCGAGCA GGGATCCGCGGTCCCTACCCTCGTCGGCGAAGCCGAATCTGCTTTTACTA ACAGCATAGCCGCTTTCAAAGTAGCAAAGGAACACATTCACCGGGAATCG AAACCCCGTTCCTCTGCATCTAGTGGTTAACGAGGGGACCACTAGTCCAC CGGGGCGACCGGTCATTACAAACGTACAAACATGGCACTTGAAGGCTGTT CACGCTGATTGGCCAAACTCAACACATCCGGAGTTATGTTATCTTGCGTA TCATCGTGTGATACAACAACAGCAGTCAAGTACTGTCGACATACACAGAG CTTCTTTGTCGCTGTACGCTGTGCTTCCCGCTTTCCCTATATTTCCGTTA CGTCCGCCATACCTCCCCTTCGTGCTCTGCAGCATGGCGTGTGAGGCACG AATAATTCGAGTGCTGCGGGCGCTTGAGTACCCCTGGGTGGACGATCTGG CTACTACTCCAGGCTTGGGATCCGCCGCACCTCTGAGTTTGGGTGCGAGG CCTCACGATCTCGCCAAGATCGTGTCGTGGATAGAGGACAGAAAGGTAAG CGATGCGCGGGGAGAAAATTATTTCGCAGCGCTTTCACTTCGCGTACACA GCAGTGTGCAAAGGCGAGCATGCGTGGATATCGGTGGTATACAAAGATGA GTCAAACACAACGCGCGTGGGTACTTACAATTTGCAGTATGATAGCGCTG CTGTGCTGCTGCTGTTGTTCTTGCTGCTGAAGCTGAAGGTCCACCTCCGT AGGGGACGTGACAACCCCCTGATAGAGGGCCAAAAGTTGTGTGGAGATCA GCGAAGCAATTTTTCGCGCATACCTGGTACATACTAGAATACTGCGGGCA CCTTTGACATACCATGCATGGGCAAACGAAAGATGGACACATTTGTTCGG CACAATTCGCAGGGATTCTGCTGGTGCTTCCAGCAGTCTTGATACGGGGT TAAACACCCCCATGGAGAATTAAAATATTTTGAGTATGTATGCAGTACAG ATGGCGCCCGCACTTAAGAACCTACCTGTTAAGAACATGGGGCTCAAAAA ATCCAAAACTCAAGAACATGAGCGTATTTTAGTGGTCCCCGTTAAGAACC TCGCACTAAAACCTATATAGTGGCCATTCGCAGCCTCAACAGGGAACTAA GAACCCCAGCCTCACGCAAAATAAGATGTTCTTAAGTGCGGGCGCCATCT GTAGTGCCCGCATTCGCTCCTGTCATCTCGCACAGACGGTAGTACCCCGC TTAATGTTAGGTACGGAGTACATATTAATCCCTGCAGGAAACTGGCACTC CTTTTCAGGTTATCAATCAATTACCGCGCTGGGTGTTTTCTTCGTACTCG TACGTAGTAGGGGGAAGAGCTCGCTTCGTCTGGGGTATGCCGCCTTACGC CCCGAAGCCTAAAAGGAGCGAGAAGTAGCACCCTTTGGCCATTCGTAGAT CCAGAGCGCGCGCACGCACACACAGTACAGGCAACACCGACTCCTTGGCC TTCGCGGCTCCGGCGGGTGTCCCACCGTTCATTGGCGGTCCTCTTTTCTA GAGTACGTACTTCGAAGTATACTTTGTATGACTTTTGTGTCCTGACAGAA AAAATACTCCGAGTTCATATACCCAGTATGTATCATATTCGAATTTTCAT AAGATGTATAATAATATCCGGTAAACGCTTTTTTATTGTCGCAATGTGTT CCTTTGTAAACAATTGTTGGAATATTCTACGTCCACAGGTCCGAGATCTG GCCATCCCCGACCGCGAGCCCCTGCGCACCCCCGGCCCCGGCTGGGAATC GGCGTTTTTCAGCTACCTGCAAGGGACGGGCTGTCCCTACGACTTTACCC CCACCCCAGGGACGAGAGCCGGCGGGGGAGACGAGGAAGGACGGACAGGA CCAAGTGACGGCAGCGACAGCAATCTGGTGCTACGAGGGCTTTCCTGGTT GAGCAGCGAGGCTGTTGCCCGTGAGTTCGAGGACGACAACGGAAAGGACT ACAAGGGCGCCGCGCGACGGGTGCGTGTGCGTGCGTTGTCCTATGTCCCC ACCCAGTCAGCCAGCCAACCTCTTCGGTGGCCCTCTGTTCGGTGCGATAC ATACGTACGCACGAAGCACGGTACTATGATTGGCCAAAACAGGACAAGAG GGACGATGCTGAAGTAGTCGCGGTTGGTGCCGAGAGTATCAAACAATTCC AAGGGACACCATTACAGACATGCCCCTTTTTTTTTTCGTCGGTGCTGCGC TTCTAACAACGGGAGACCTTGCTCGCGTTGTGTGTTCTACGCCGATTTTA GAACCACAACCATGCCAAAAAAATTTTTTATATCAATATTGCTTGTTTAT GTTTTCCTGAACTGTCCATCCTGCATGGGTTCTGTCGAAAAGAGGCGTTT CTTGCTGGTTGATGTGCTGTTCCGTGCTGTGCTGTCTGTTCTGGATACTC GATGGCGTGTTTGTGTTTTGCGTTTGAGTGTTGTTTGAGTTTCATCGACG AGAGAGCACGCCCTGCCATGCCTTCTGGGAGGGTGACCTTGATCCTTCTG TTGCTTTGACACGCATGTATATTTCACGTTAACTTCGAAGACTACGTTCA TCGCGGTGAGAAATAGTGTGGCGATGCATCAATGGGGGGGGATTATTGGC GCGTGCGTCGGGGGGGGTTAGCATGCACTTCAGAAAGGCTATTTTTACGG CTGTTACAGCAAGGTTTAAGACAAGGCCTGGTCAACGTGCGAGGAAACCT GCTTGTGGTGTCATACTAATTGTAATCTGCCAGATCCCCTTCCTCGCCCC CTCCCCTTCCTCCCCACGGCCTCCGATTTGGGACGTACCTTCACGTTTCT CTGTCTGTGTCTGCGGGGCCTCACCAACACCGCCAACATCACCACCAACA CCCCCACCAACGACAACGACAACGACAAACGACACTTCAATAGTTGCTGT CGACAATACCTCGGCCTTCACCTCCACGGCAGCCTGAGAAGAGTGGGCAA CCATTACCGCCGGAAGAGCCCGTCACTGCTGCTGCTGCTGCCGCTGCCGC TGCTGGTATTGTTGCTACTGACGATGACGGTTTTGAGGATGGAAAGAAGG TTTTCCATGAGCTAAAGGGATTCGCGGCCGGGGTGGAGACCGGAAACGAG GCTTGCAATAGCGTGGCAACAGTCCTTCGGATGATGTTTCTGTCGGATTT GAGGGATCTGCAGGACGAGGTCAACGGTGTTATTGCCTTGGCGCAATCCA GCAGAACAAAACGCACATCGTGACCATGTCTAACGTAGGTGTGGAATTTT CGCTTCTCACCGAAGCAGTCGACAACAATATTGTCTCAGCGCCTGATGCA ACTGTGGTAATCCCGCCGCATAGTCATCCAGTGGCGCGCTCGCTGTCGGG AAAGGTGGCACGCACAGTTTTCTACATGGTCAAAAGAGAGGGGAGCCTGT GACTCGCTCGTGCCCCCTGTTGGCTGTGTTGGCTCTATTGCCGTTGCCTT TCGCAACATAGGCGGTGAAACGTGTGCTTTGTTCTTAGTGTGTGGCGAAG GGTGGGTACGATTTGCTTTCTCACTCGGAGCATGATATGTGTCAAATTCC ATCTTGCATCATACTTCTACTTCGGAGTAAGTAAGAATACGAACTGTAAC ATCATCTGGGTTCGAGCCTGCGATGGACAGAAGAACGAGAAGCGGCCATA CGGCACAAGTTTCGTGGAATTATCTTGGAATTTCCCGCGCTGACTACTGT GTGCGTGCGCATTGCCTAAACAGCGGAGCAAGTTGTCATAACGCGACGCG CGATGGGTGAGATTTTGCTAGAGGAGCAAAGCGGTATCTGATGTGCATGG AATTTACGACAACTCCTCCGTAACTCTGGTTTCCCTCAAGGCGTCACACA CTTTTGGAACACTGCTGCTTGCTATTTCGTACCTGTATAAAATATGCCAA GGTCGTAAATAGATGCACAAAGTCTACATTTTGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1182:34267..38301+

>mRNA_P-littoralis_Contig1182.12.1 ID=mRNA_P-littoralis_Contig1182.12.1|Name=mRNA_P-littoralis_Contig1182.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=774bp|location=Sequence derived from alignment at P-littoralis_Contig1182:34267..38301+ (Pylaiella littoralis U1_48)
ATGGCGTGTGAGGCACGAATAATTCGAGTGCTGCGGGCGCTTGAGTACCC
CTGGGTGGACGATCTGGCTACTACTCCAGGCTTGGGATCCGCCGCACCTC
TGAGTTTGGGTGCGAGGCCTCACGATCTCGCCAAGATCGTGTCGTGGATA
GAGGACAGAAAGGTCCGAGATCTGGCCATCCCCGACCGCGAGCCCCTGCG
CACCCCCGGCCCCGGCTGGGAATCGGCGTTTTTCAGCTACCTGCAAGGGA
CGGGCTGTCCCTACGACTTTACCCCCACCCCAGGGACGAGAGCCGGCGGG
GGAGACGAGGAAGGACGGACAGGACCAAGTGACGGCAGCGACAGCAATCT
GGTGCTACGAGGGCTTTCCTGGTTGAGCAGCGAGGCTGTTGCCCGTGAGT
TCGAGGACGACAACGGAAAGGACTACAAGGGCGCCGCGCGACGGTTGCTG
TCGACAATACCTCGGCCTTCACCTCCACGGCAGCCTGAGAAGAGTGGGCA
ACCATTACCGCCGGAAGAGCCCGTCACTGCTGCTGCTGCTGCCGCTGCCG
CTGCTGGTATTGTTGCTACTGACGATGACGGTTTTGAGGATGGAAAGAAG
GTTTTCCATGAGCTAAAGGGATTCGCGGCCGGGGTGGAGACCGGAAACGA
GGCTTGCAATAGCGTGGCAACAGTCCTTCGGATGATGTTTCTGTCGGATT
TGAGGGATCTGCAGGACGAGGTCAACGGTGTTATTGCCTTGGCGCAATCC
AGCAGAACAAAACGCACATCGTGA
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