mRNA_P-littoralis_Contig1182.12.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1182.12.1 vs. uniprot
Match: A0A6H5L7S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7S2_9PHAE) HSP 1 Score: 225 bits (574), Expect = 7.260e-66 Identity = 135/256 (52.73%), Postives = 159/256 (62.11%), Query Frame = 2
Query: 434 MACEARIIRVLRALEYPWVDDLATTPGLGSAAPLSLGARPHDLAKIVSWIEDRKVRDLAIPDREPLRTPGPGWESAFFSYLQGTGCPYDFTPTPGTRAGGGDEEGRTGPSDGSDSNLVLRGLSWLSSEAVAREFEDDNGKDYKGAARRLLSTIPRPSPPRQPEKSGQPLPPEEPVTXXXXXXXXXXXXXXXXDGFEDGKKVFHE-LKGFAAGVETGNEACNSVATVLRMMFLSDLRDLQDEVNGVIALAQSSRTKR 1198
MACEARIIR LR +EYP +D ++ + G SL A+PH+LAKIV WIEDRK+R L I DREPLRTPGP WE AFFSYLQ GCP DF T G GGG+ G VLRG+SWL +EAVA +FED NGK+YK AAR LL R SP G V G + + F E L+GF AGVETG+EAC+SVATVLRM++LSDLR LQ+EVNGVI LAQS+R ++
Sbjct: 1 MACEARIIRALRTMEYPGLDHISGSAATGR----SLVAQPHELAKIVGWIEDRKIRGLTISDREPLRTPGPKWEEAFFSYLQEMGCPNDFKATGG---GGGEPSGAA----------VLRGVSWLVTEAVAYDFED-NGKEYKAAARELLLAKTRFSPQAMGGARGGSSSDPSSVQPEPAQQTISTAGDAMDIGSGEEHRTFREQLRGFTAGVETGDEACDSVATVLRMLYLSDLRSLQNEVNGVIDLAQSTRREQ 238
BLAST of mRNA_P-littoralis_Contig1182.12.1 vs. uniprot
Match: D7G3K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3K0_ECTSI) HSP 1 Score: 204 bits (519), Expect = 4.950e-58 Identity = 132/244 (54.10%), Postives = 154/244 (63.11%), Query Frame = 2
Query: 473 LEYPWVDDLATTPGLGSAAP-LSLGARPHDLAKIVSWIEDRKVRDLAIPDREPLRTPGPGWESAFFSYLQGTGCPYDFTPTPGTRAGGGDEEGRTGPSDGSDSNLVLRGLSWLSSEAVAREFEDDNGKDYKGAARRLLSTIPRPSPPRQPEKSGQPLPPEEPVTXXXXXXXXXXXXXXXXDGFEDGKKVFHE-LKGFAAGVETGNEACNSVATVLRMMFLSDLRDLQDEVNGVIALAQSSRTKR 1198
+EYP +D ++ GSAA SL A+PH+LAKIV WIEDRKVR LAI DREPLRTPGP WE FSYLQ GCP DF T GGG E PS S VLRG+SWL +EAVA +F DDNGK+YK AAR LL+ PR SP G V G ++F E L+GF AGVETG+EAC+SVATVLRM++LSDLR+LQDEVNGVIALAQS+R ++
Sbjct: 1 MEYPGLDHVS-----GSAASGRSLVAQPHELAKIVGWIEDRKVRGLAISDREPLRTPGPKWEEVLFSYLQEMGCPNDFKAT----GGGGGE-----PS----SAAVLRGVSWLVTEAVACDF-DDNGKEYKAAARELLAN-PRCSPQAVGGARGGSSSDHGSVQPEPAQPTISTAGVAMDIGPGGEHRIFREQLRGFTAGVETGDEACDSVATVLRMLYLSDLRNLQDEVNGVIALAQSTRREQ 224
BLAST of mRNA_P-littoralis_Contig1182.12.1 vs. uniprot
Match: A0A7S3Y2A7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2A7_HETAK) HSP 1 Score: 78.2 bits (191), Expect = 3.290e-12 Identity = 53/144 (36.81%), Postives = 66/144 (45.83%), Query Frame = 2
Query: 440 CEARIIRVLRALEYPWVDDLATTPGLGSAAPLSLGARPHDLAKIVSWIEDRKVRDLAIPDREPLRTPGPGWESAFFSYLQGTGCPYDFTPTPGTRAGGGDEEGRTGPSDGSDSNLVLRGLSWLSSEAVAREFEDDNGKDYKGAA 871
C I R L AL YP D P +L K+V+W+EDRK+R +I +R LR PGP W SAF YL+ CP + EGR +GS LRGL WL +A+A E+ED G Y A
Sbjct: 20 CLENIERSLTALGYPAKDSFDHE-------------EPVELTKLVAWLEDRKIRLYSIEERTALRNPGPAWGSAFKKYLEDLECPQSYIHA----------EGRL---EGSS----LRGLRWLLHKAIAYEYED-KGSTYNARA 132
BLAST of mRNA_P-littoralis_Contig1182.12.1 vs. uniprot
Match: A0A7S3K0K5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K0K5_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 2.520e-9 Identity = 66/259 (25.48%), Postives = 96/259 (37.07%), Query Frame = 2
Query: 434 MACEARIIRVLRALEYPWVDDLATTPGLGSAAPLSLGARPHDLAKIVSWIEDRKVRDLAIPDREPLRTPGPGWESAFFSYLQGTGCPYDFTPTPGTRAGGGDEEGRTG----------PSDGSDSNLVLRGLSWLSSEAVAREFEDDNGKDYKGAARRLLSTIPRPSPPRQPEKSGQPLPPEEPVTXXXXXXXXXXXXXXXXDGFEDGKKVFHELKGFAAGVETGNEACNSVATVLRMMFLSDLRDLQDEVNGVIALAQ 1180
MA A R+L +LEYP D+ +A ++SW+EDRK+R I +R PLRT GP W AF YL CP+ D E R G DG D+ +WL S+ AR E + + LST + F E + G T N+ +++A +LR+ +L+DLR+LQ+ +N ++ AQ
Sbjct: 1 MAHLASYTRMLESLEYPLELDVKDD---------------QSIAMMISWLEDRKIRIWEIEERIPLRTAGPQWIEAFERYLNDLDCPHQ------------DMERRVGFVLQQAVACAYEDGEDA-FKADAEAWLMSQQQARIQEAEINQLATLLDLHNLST--------------------DDALLRICAAAAHVADAKDNTTARTRHSFFQENPQLSLGFTTNNQDTDNIAKILRLFYLADLRNLQNNINAILVRAQ 211
BLAST of mRNA_P-littoralis_Contig1182.12.1 vs. uniprot
Match: A0A7S2HTN7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HTN7_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 1.520e-8 Identity = 45/137 (32.85%), Postives = 69/137 (50.36%), Query Frame = 2
Query: 443 EARIIRVLRALEYPWVDDLATTPGLGSAAPLSLGARPHDLAKIVSWIEDRKVRDLAIPDREPLRTP--GPGWESAFFSYLQGTGCPYDFTPTPGTRAGGGDEEGRTGPSDGSDSNLVL--RGLSWLSSEAVAREFED 841
++ + R L AL YP + + P SL D+ K+V+W+EDRK+R L I +R+PLR GP W +AF SYL CPY++T G +D S + + + L+W+ +A++ E ED
Sbjct: 12 KSGLCRWLGALAYPSAETFS---------PFSL----DDVVKLVTWLEDRKIRILDIDERKPLRQANNGPAWTNAFQSYLASLECPYEWTGI--------------GMTDTSSAQALQDRKVLTWIIQKAISYECED 121
BLAST of mRNA_P-littoralis_Contig1182.12.1 vs. uniprot
Match: A0A7S1C4J5_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C4J5_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 1.900e-8 Identity = 71/277 (25.63%), Postives = 107/277 (38.63%), Query Frame = 2
Query: 434 MACEARIIRVLRALEYP-W----VDDLATTPGLGSAAPLSLGARPHDLAKIVSWIEDRKVRDLAIPDREPLRTPGPGWESAFFSYLQGTGCPYDFTPTPGTRAGGGDEEGRTGPSDGSDSNLVLRGLSWLSSEAVAREFEDDNGKDYKGAARRLLS---TIPRPSPPRQPEKSGQPLPPEEPVTXXXXXXXXXXXXXXXXDGFEDGKKVFHE-------------------LKGFAAGVETGNEACNSVATVLRMMFLSDLRDLQDEVNGVIALAQS 1183
MA EA R LRAL YP W +DD +++ +V+++EDRKVR L + R PLRT GPGW AF SY+ G A GG+ + T + + WL A+ E+ED + AA R+ S + P E+ +T + E ++ + G + G+ TG+ A + V R++++SDLR LQD VN ++ Q+
Sbjct: 1 MAEEASTRRRLRALAYPRWREFRLDD------------------DNEVVLLVAFLEDRKVRALPMEARAPLRTAGPGWHDAFLSYVGGDPLNCPLLSAAAIEAAGGEVDRAT----------LGACVMWLIGHAIGVEYEDV-AEAANAAAVRVASDSGSAPASGASGGGEEGADAAAVRAALTPIAALLGVRVDGRAPAELTEAVRRAVQRKVVPAVEAAGGAGRTLPLTMDGISGGLLTGDAALDRAIAVARLLYVSDLRQLQDSVNELLVSVQA 248
BLAST of mRNA_P-littoralis_Contig1182.12.1 vs. uniprot
Match: A0A7S4A3V6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A3V6_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 9.950e-8 Identity = 47/132 (35.61%), Postives = 60/132 (45.45%), Query Frame = 2
Query: 458 RVLRALEYPWVDDLATTPGLGSAAPLSLGARPHDLAKIVSWIEDRKVRDLAIPDREPLRTPGPGWESAFFSYLQGTGCPYDFTPTPGTRAGGGDEEGRTGPSDGSDSNLVLRGLSWLSSEAVAREFEDDNGK 853
R+L ALEYP+ P G AA + AK+VSW+EDRK+R I R+PLRT G +++AF SYLQ CP P+ + L WL EAV E ED+ K
Sbjct: 8 RLLDALEYPF-------PFAGDAAAV---------AKLVSWVEDRKIRLWEIEQRKPLRTAGVEFDAAFQSYLQELECPV-LQPS--------------------------QALVWLLHEAVKCELEDEAAK 96
BLAST of mRNA_P-littoralis_Contig1182.12.1 vs. uniprot
Match: A0A7S0TRU3_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TRU3_HEMAN) HSP 1 Score: 62.8 bits (151), Expect = 4.590e-7 Identity = 69/287 (24.04%), Postives = 108/287 (37.63%), Query Frame = 2
Query: 434 MACEARIIRVLRALEYPWVDDLATTPGLGSAAPLSLGARPHDLAKIVSWIEDRKVRDLAIPDREPLR-TPGPGWESAFFSYLQGTGCPYDFTPTPGTRAGGGDEEGRTGPSDGSDSNLVLRGLSWLSSEAVAREFEDDNGKDYKGAARRLLSTIPR--PSPPRQPEKSGQPLP------------------------PEEP-----------VTXXXXXXXXXXXXXXXXDGFEDGKKVFHELKGFAAGVETGNEACNSVATVLRMMFLSDLRDLQDEVNGVIALAQ 1180
M A +R L+ALE+P + G +V W+E+RK+R DR+ L+ G GW+ A Y+ DE G PS D+ + WL+S A+ E+ D K K A RL P P+ P ++ + LP PE+ V G + ++ ++K + G +TG+E N A++LR+++++DLR LQDEVN +I+ Q
Sbjct: 16 MILGAACVRKLQALEHPQAAAMGDLDETG-------------FRNLVLWLENRKIRYYTEADRKGLQDVKGKGWDDALLKYM--------------------DELGAGKPSVKGDT-AKHQVADWLASYAIGMEYSDRASKLSKIIAPRLAPAAPTHAPAAAAAPAQAKESLPEIELDAESPEFVEALHKLAATLGVPEDDSAEAMVRACAGVLKRKLSAEALAKAGSSQGGGKSKRRKAFDVKDYPPGFDTGDEELNKAASLLRLLYVADLRKLQDEVNALISQMQ 268
BLAST of mRNA_P-littoralis_Contig1182.12.1 vs. uniprot
Match: T1K580_TETUR (Uncharacterized protein n=1 Tax=Tetranychus urticae TaxID=32264 RepID=T1K580_TETUR) HSP 1 Score: 57.4 bits (137), Expect = 1.940e-5 Identity = 60/240 (25.00%), Postives = 97/240 (40.42%), Query Frame = 2
Query: 554 HDLAKIVSWIEDRKVRDLAIPDREPLRT-PGPGWESAFFSYLQGTGCPYDFTPTPGTRAGGGDEEGRTGPSDGSDSNLVLRGLSWLSSEAVAREFEDDNGKDYKGAARRLLSTIPRPSPPRQPEKS----------------GQ-------PLPPEEPVTXXXXXXXXXXXXXXXXDGFE------DGKKVFHELKGFAAGVETGNEACNSVATVLRMMFLSDLRDLQDEVNGVIALAQS 1183
+ +V+W+ED+K+R I +R LR P WE+AF YL+ CP+D D LVL WL S AV ++ D+ K YK +L+ + S P+ + + G+ P P+ +T E G+K F L+ G + ++ + A VLR+++++DLRDLQ+++N VI Q+
Sbjct: 23 NSFRNLVAWLEDQKIRHYPIEERSGLRKISSPDWENAFKKYLESLKCPFDVK----------------------DRKLVL---DWLISTAVRLDYNDNFDK-YKDVTGKLVKN--QASNPQMVQANPLDNLDFNAKEFKHGIGELAKLLKVPQHPDHLITLKAINHLIKTRLTADALQSEKEELETSGEKSF-TLENSILGFDVKDQNLSRAAKVLRILYINDLRDLQNKINQVIVSIQA 233
BLAST of mRNA_P-littoralis_Contig1182.12.1 vs. uniprot
Match: A0A087SUE4_AUXPR (UPF0568 protein C14orf166-like protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SUE4_AUXPR) HSP 1 Score: 57.4 bits (137), Expect = 2.270e-5 Identity = 74/264 (28.03%), Postives = 101/264 (38.26%), Query Frame = 2
Query: 464 LRALEYPWVDDLATTPGLGSAAPLSLGARPHDLAKIVSWIEDRKVRDLAIPDREPL-RTPGPGWESAFFSYLQGTGCPYDFTPTPGT------RAGGGDEEGRTGPSDGSDSNLVLRG---LSWLSSEAVAREFEDDNGKDYKGAARRLLSTIPRPSPPRQPEKSGQPLPPEEPVTXXXXXXXXXXXXXXXXDGFED-------GKKVFHE------LKGFAAGVETGNEACNSVATVLRMMFLSDLRDLQDEVNGVIALAQSS 1186
LRAL+YP P A+ ARP +V+W+E++K+R IP R+ L T W +A+ YL CP P T RA + R + S S V G W SE F D A R+L T+ Q E + P T G ED G++ L GF G TG+ ++ AT+LRM++L DLR LQD V+ + Q+S
Sbjct: 8 LRALKYPGASSF---PSDTRASIEVEAARP-----LVTWLENQKIRHYTIPQRQGLLATSADDWRAAYGQYLTALECPCSSEGLPATLQWLCSRAVSLEYADRNEQLNASTSAAVEVGGAVSDW--SEHSLPPFADTASPAVAAAVMRMLRTLHM----DQEEVT--------PSTVERLSSVLDTQVLPALPGDEDTAAPSGTGRQGVSAAGPIALLAGFPLGFSTGSPLSDAAATILRMLYLRDLRGLQDVVDRELERVQAS 249 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1182.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1182.12.1 >prot_P-littoralis_Contig1182.12.1 ID=prot_P-littoralis_Contig1182.12.1|Name=mRNA_P-littoralis_Contig1182.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=258bp MACEARIIRVLRALEYPWVDDLATTPGLGSAAPLSLGARPHDLAKIVSWIback to top mRNA from alignment at P-littoralis_Contig1182:34267..38301+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1182.12.1 ID=mRNA_P-littoralis_Contig1182.12.1|Name=mRNA_P-littoralis_Contig1182.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4035bp|location=Sequence derived from alignment at P-littoralis_Contig1182:34267..38301+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1182:34267..38301+ >mRNA_P-littoralis_Contig1182.12.1 ID=mRNA_P-littoralis_Contig1182.12.1|Name=mRNA_P-littoralis_Contig1182.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=774bp|location=Sequence derived from alignment at P-littoralis_Contig1182:34267..38301+ (Pylaiella littoralis U1_48)back to top |