mRNA_P-littoralis_Contig722.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig722.6.1
Unique NamemRNA_P-littoralis_Contig722.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig722.6.1 vs. uniprot
Match: D8LD01_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD01_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 1.260e-26
Identity = 87/164 (53.05%), Postives = 98/164 (59.76%), Query Frame = 2 
Query:  131 FDFAHAFHSPLRSTSDSRHRHPCLSPXXXXXXXXXXXXXXINDASRPSSRRRVV----GVQLALHSGDALVVGA-VVAGAAAIAASRGLSTLAGAFKLADYRTTSGHDLCLDEKLQSKRRRLLPSEASPGSSAEG----GLPGSGLGEDMDWREEIRLASQLPD 595
            F  A+AFH     T  SR  H  ++P              +  AS  + RRR       +QLAL S +AL VGA V+AGAA I A RGLSTLAGAFKLADYRTTSGHDL LDEKL SKRRRL PS  +   S E     G   + LG + DWREEIRLASQLPD
Sbjct:   17 FGVANAFHVYPPPTLSSRGGHVEIAPTRPFSC--------LPAASCGAHRRRSCCGRRELQLALES-EALAVGAAVIAGAAIIGAGRGLSTLAGAFKLADYRTTSGHDLRLDEKLGSKRRRLDPSSETTSGSLESTGGRGASETALGVETDWREEIRLASQLPD 171
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig722.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD01_ECTSI1.260e-2653.05Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig722contigP-littoralis_Contig722:42868..46098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1613
Hectar predicted targeting categorymitochondrion
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_001730.1
Cds size567
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791503.6564589-UTR-P-littoralis_Contig722:42867..438491680791503.6564589-UTR-P-littoralis_Contig722:42867..43849Pylaiella littoralis U1_48UTRP-littoralis_Contig722 42868..43849 -
1680791503.7179437-UTR-P-littoralis_Contig722:46034..460981680791503.7179437-UTR-P-littoralis_Contig722:46034..46098Pylaiella littoralis U1_48UTRP-littoralis_Contig722 46035..46098 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791503.6692376-CDS-P-littoralis_Contig722:43849..440511680791503.6692376-CDS-P-littoralis_Contig722:43849..44051Pylaiella littoralis U1_48CDSP-littoralis_Contig722 43850..44051 -
1680791503.6862373-CDS-P-littoralis_Contig722:44470..445581680791503.6862373-CDS-P-littoralis_Contig722:44470..44558Pylaiella littoralis U1_48CDSP-littoralis_Contig722 44471..44558 -
1680791503.7037601-CDS-P-littoralis_Contig722:45757..460341680791503.7037601-CDS-P-littoralis_Contig722:45757..46034Pylaiella littoralis U1_48CDSP-littoralis_Contig722 45758..46034 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig722.6.1prot_P-littoralis_Contig722.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig722 43850..46034 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig722.6.1

>prot_P-littoralis_Contig722.6.1 ID=prot_P-littoralis_Contig722.6.1|Name=mRNA_P-littoralis_Contig722.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=189bp
MRRVSYAAKVVACTTLAACRGPFDFAHAFHSPLRSTSDSRHRHPCLSPPP
SSSSPSSSSSSSINDASRPSSRRRVVGVQLALHSGDALVVGAVVAGAAAI
AASRGLSTLAGAFKLADYRTTSGHDLCLDEKLQSKRRRLLPSEASPGSSA
EGGLPGSGLGEDMDWREEIRLASQLPDYDNAAGMRDIL*
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mRNA from alignment at P-littoralis_Contig722:42868..46098-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig722.6.1 ID=mRNA_P-littoralis_Contig722.6.1|Name=mRNA_P-littoralis_Contig722.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3231bp|location=Sequence derived from alignment at P-littoralis_Contig722:42868..46098- (Pylaiella littoralis U1_48)
CCCCCATCTCTCAGCTCGCTGCTTGTTCCACCCACACATCACAGATAAAC
GATTGAGCGTGAGGATGAGACGGGTATCCTACGCTGCCAAGGTCGTTGCC
TGTACAACCTTGGCTGCATGTCGCGGCCCCTTTGATTTCGCACACGCCTT
TCACTCCCCTCTCAGATCAACCTCGGACAGCCGACACCGACACCCGTGTC
TATCACCACCACCATCATCATCATCACCATCATCATCATCATCCAGCAGC
ATCAATGATGCGAGTCGACCATCCTCCAGAAGGCGGGTTGTTGGTGTCCA
ACTCGCTCTGCACAGCGGGGATGCACTGGTGGTCGGGGCAGGTAAGAGCG
AGGATCAAATTTACAACTAGGCAGTTTTTAGTTCTCAGTATCAAATTTAC
CAGAAATTTACCGAAGACGCTCTTCATGACTCCGTATATACAGCAGTACT
GCATTCTGTGTGTGTGTTCGTCCCATTTATTCTGGCGCCGATCAACACAC
CTTTCGATAGATGCGATATCCTTGACCTTCAACAGTACTTAGGGTATTTG
ATCAGAAACCTTGAAGAGGAATGCGCTAGAGATGCTTATGGTTTTGCGGC
TGGTACAGGCCAGAGCTGACCCCTAAAGGCTGTCTTTGACCCAACTTACC
CTGTGAAGGACGGCAATCGGTAGTGCGAGCACAACGCGTTCAAGGGGGCC
GGCGCACCAGGCGGCACCATCTACCCTGTAGGGTGCTCTCGTCCAGCGCA
TCCTTCTGTTTTGTTGCGGCATCACTTCTATTGGAGTCTTGCCTTTTCCA
CATGCCTCGAGGTTGGGCAATTGTCGTGCCCAAGGTAATGTTTTTGGGCG
CCCTTCGCGTGCAATACCTGCCGATTTTTGCAGCAAAGCAGTGCATTCGG
CCCGACAACAACAACAACAACAACAACAACAACAACAACAACAACACAAA
CACAAACACACACACACATACACAAACTGCTGCTGCTTTACCCCTTTTTG
TGTTCAATCGCAAACAGCACTCCGACATGGTATGAAAATCACTTTTTGAA
AACGTCGAACATGGCAATACGTTTCGGTGCTCAGCTCTCGAGCCAAGAAA
GTTGAACGTGTCGACCATGCGGAAAGGCAAAGGGACACAGACCAAGAACC
GGAAGAGATGGGGGAGGGAGGAGGGAGGGCAACGAGACGCAGGGGAAGCG
CACAACAGAGTGTGCATACATACACGTCAAGTCAACATTTTGGTACATGC
AACATGCATAAAGCGTCCATTGCACGTGCATGACAAGCGATACTGACGGT
CATTTTATATCCTTTCTACATTTTATATCCTTTCTACAGTACCTGGTAAT
GGGGAGTGAACTCTGGCCGACGAATCTCGTTTCTAGTACACAGCAGCGTT
AAAAAGAAAAAGCCGAAATGCCGGTAGACCCAATCGCCCTCGCTCCTCAC
ACACGCGCGCGCTCCTACTTTATCCTCAACGCCGCGGCCGTTTCCTCCGC
TGCGTGCCGTGTCTCGCTCCGGTATTTTGGGCTGGGGCAGTGGTTGCAGG
GGCTGCCGCGATCGCAGCGAGCCGAGGACTGTCAACACTTGCCGGCGCGT
TTAAGCTTGCGGACTACCGTACCACGAGGTAACGGAGCAACAAGGGTTTG
CGATCTTTTCAACAGTCCCTTACGCAGAGGGGGTATCGAAAGTCAAGAGT
GAAACCACTATAGCTTTGCACGAAGTGTCGGGCGGTCAGGCGGTTAATTG
TATCAGGAAAACACCTGTATCATATCCCTTGACAGCCTTCACAGGAAATG
CCAAGCTTGAGGGCCTGCTCACCATTGTGAATATTCCACTGTATGAAGCT
TTTGATAAGCTGACTCACACCATCTGTTTTTCAATTCACATACTGTCTGT
GCATACGTAGTTTCGATTTTCTGATGTATGATGCCTTGTCTCGTTTGGTC
GTCTATCGACATTGCGCCTGAACAGTCTGGTGTCCTTTATTTATATTTCG
TGCCGCATCTCCATCTGCTGGTCTTTTCTGGTGCCTCCTGCCAACAGCGG
CCACGACCTGTGTTTGGACGAAAAGCTGCAGTCGAAGCGCCGCCGACTCC
TCCCGTCAGAGGCGTCTCCAGGGAGTTCAGCTGAAGGAGGCTTGCCTGGG
TCAGGGTTGGGGGAGGACATGGATTGGCGAGAAGAGATTCGATTGGCCTC
GCAGCTACCTGATTATGACAACGCCGCTGGGATGCGTGACATTTTGTAGA
AGCAGGATTGAATTAATAAATACTTCAGCGCGCGGTTTAATCATCGGAGG
CACACACACACAATTCCATTTCTGTAGTATTTTCAGAAATCAGGAGGAAG
GGAAAACAAACTGGGCGCCCGCACACATGTAGTAGATACCGAGGGGGGGT
TGTATCTTCTCTCGTGGGTTTTAAACTTGTTCCAAAGCATGACTTTGGGT
CGAAAACGACTGAGGAGCATCGGTTTGCAGCACGAGGTTGTCAGAGGAAT
TCGGAATGTCAAATAGTGCTAACAAGCTTGATGTACGAAGAGATAGACCT
GGTTGTAGAGGCAGGTGGTTTTTGTCGAACGAAATGGGTGCCTGCTACCC
GCTCGTGTACAATGTTACCGTCCCTCAACGGCGCAAATATGCGCTACGTT
TCCGGTACTACTCGAAGGCGAAGTATCACTGCGTCTAGACCAGGATTCAG
TTGAAATTCACAACAGTAAAGCGCATGGCGTTCTTTGCACGTAGCGCCGG
CATCCAGTTACATCAAAGACAATGTGTACGCTACAACTGGAAATTCCTTA
AGAAACAAGCCCGGCCTACACGCATGGTATGTACCACATATGGCACTGGT
GCTGTGTGGCTTTCTTGTGAGATTTTTTTTTTCTGTGCGTGGCGTCGCTT
TTTTTTTATTCTTAGAAAAAGTAAGCAGAAGTTGCTGCGGGTGCTTCCCT
CCCACCGTGTCGGTTAACGCTGCTGGGGTGTGTAGTTCCGATTTGCCCAC
TTGTTGTGTTTGCGTACAGTTCGCCTGGTACCAGGTAAATGGCCTGATGA
GCGGTGTTCGCGGACAATAGGAAGAAATTCCAAGAAGTTTCTGGCCCCGA
TCTCCGCAATTGAGGCTGCACAACAATAGTACTCCCATGATGCCATGACG
AATATAATGACTCAAACCAAAACAAACATATTTCAACATTGAAGGGGGTG
TGCTACTACCAGCGAACACCTGGGATTTGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig722:42868..46098-

>mRNA_P-littoralis_Contig722.6.1 ID=mRNA_P-littoralis_Contig722.6.1|Name=mRNA_P-littoralis_Contig722.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=567bp|location=Sequence derived from alignment at P-littoralis_Contig722:42868..46098- (Pylaiella littoralis U1_48)
ATGAGACGGGTATCCTACGCTGCCAAGGTCGTTGCCTGTACAACCTTGGC
TGCATGTCGCGGCCCCTTTGATTTCGCACACGCCTTTCACTCCCCTCTCA
GATCAACCTCGGACAGCCGACACCGACACCCGTGTCTATCACCACCACCA
TCATCATCATCACCATCATCATCATCATCCAGCAGCATCAATGATGCGAG
TCGACCATCCTCCAGAAGGCGGGTTGTTGGTGTCCAACTCGCTCTGCACA
GCGGGGATGCACTGGTGGTCGGGGCAGTGGTTGCAGGGGCTGCCGCGATC
GCAGCGAGCCGAGGACTGTCAACACTTGCCGGCGCGTTTAAGCTTGCGGA
CTACCGTACCACGAGCGGCCACGACCTGTGTTTGGACGAAAAGCTGCAGT
CGAAGCGCCGCCGACTCCTCCCGTCAGAGGCGTCTCCAGGGAGTTCAGCT
GAAGGAGGCTTGCCTGGGTCAGGGTTGGGGGAGGACATGGATTGGCGAGA
AGAGATTCGATTGGCCTCGCAGCTACCTGATTATGACAACGCCGCTGGGA
TGCGTGACATTTTGTAG
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